Xanthomonas fragariae strain PD885 plasmid pPD885-29, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Submitted (11-MAY-2017) JLU, JLU, Justus-Liebig-University Giessen, Bioinformatics and Systems Biology, Heinrich-Buff-Ring 58, 35392 Giessen, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nLT853883.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 20:08:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,084\nCDSs (total) :: 3,940\nGenes (coding) :: 3,292\nCDSs (with protein) :: 3,292\nGenes (RNA) :: 144\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 86\nPseudo Genes (total) :: 648\nCDSs (without protein) :: 648\nPseudo Genes (ambiguous residues) :: 0 of 648\nPseudo Genes (frameshifted) :: 393 of 648\nPseudo Genes (incomplete) :: 414 of 648\nPseudo Genes (internal stop) :: 173 of 648\nPseudo Genes (multiple problems) :: 272 of 648\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF018714.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012382835.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017163775.1
COORDINATES: similar to AA sequence:RefSeq:WP_014747672.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_009618210.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: protein motif:HMM:NF037437.2
COORDINATES: similar to AA sequence:RefSeq:WP_007967578.1
COORDINATES: protein motif:HMM:NF023926.2
COORDINATES: similar to AA sequence:RefSeq:WP_019899616.1
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF037421.2
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:TIGR02788.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF038091.1
COORDINATES: protein motif:HMM:NF015487.2
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: protein motif:HMM:NF016238.2
COORDINATES: protein motif:HMM:NF016491.2
COORDINATES: protein motif:HMM:NF033894.1
COORDINATES: protein motif:HMM:NF019608.2
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF015118.2
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_015865865.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_020723402.1
COORDINATES: protein motif:HMM:NF024554.2
DUF3991 and TOPRIM domain-containing protein
COORDINATES: protein motif:HMM:NF037528.2