Desulfohalobium retbaense DSM 5692 plasmid pDRET01, complete sequence.
type: Entry
definition: Desulfohalobium retbaense DSM 5692 plasmid pDRET01, complete sequence.
sequence version: NC_013224.1
sequence date: 2023-04-22
sequence: sequence
division: CON
label: NC_013224.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598459
keyword: RefSeq
source: Desulfohalobium retbaense DSM 5692
organism: Desulfohalobium retbaense DSM 5692
taxonomy: Bacteria; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfohalobiaceae; Desulfohalobium.
reference: 1
references: 21304676
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001735.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4082992\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Desulfohalobium retbaense DSM 5692\nCulture Collection ID :: DSM 5692\nGOLD Stamp ID :: Gi02246\nGreengenes ID :: 10400\nFunding Program :: DOE-GEBA 2007\nGene Calling Method :: GeneMark\nIsolation Site :: Saline sediment from Retba Lake in Senegal\n Africa\nIsolation Country :: Senegal\nLatitude :: 14.833333\nLongitude :: -17.233333\nOxygen Requirement :: Anaerobe\nCell Shape :: Rod-shaped\nMotility :: Motile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nTemperature Optimum :: 35C\nSalinity :: Halophile\nGram Staining :: gram-\nBiotic Relationship :: Free living\nDiseases :: None\nPhenotypes :: Sulfate reducer\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/22/2023 00:46:46\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-…

sequence
subclass of: SO_0000155
sequence length: 45263
topology: circular
so has quality: SO_0000988
location: 1..45263
location: region:1-45263:1
RO_0002162: 485915

NC_013224
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598459
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Desulfohalobium retbaense type strain (HR(100))
author: Spring, S.
author: Nolan, M.
author: Lapidus, A.
author: Glavina Del Rio, T.
author: Copeland, A.
author: Tice, H.
author: Cheng, J.F.
author: Lucas, S.
author: Land, M.
author: Chen, F.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Ivanova, N.
author: Mavromatis, K.
author: Mikhailova, N.
author: Pati, A.
author: Chen, A.
author: Palaniappan, K.
author: Hauser, L.
author: Chang, Y.J.
author: Jeffries, C.D.
author: Munk, C.
author: Kiss, H.
author: Chain, P.
author: Han, C.
author: Brettin, T.
author: Detter, J.C.
author: Schuler, E.
author: Goker, M.
author: Rohde, M.
author: Bristow, J.
author: Eisen, J.A.
author: Markowitz, V.
author: Hugenholtz, P.
author: Kyrpides, N.C.
author: Klenk, H.P.
journal: Stand Genomic Sci
volume: 2
issue: 1
pages: 38-48
year: 2010
pubmed: 21304676
comments: Publication Status: Online-Only

21304676
type: PubMed
SIO_000068: pubmed

2
title: The complete plasmid of Desulfohalobium retbaense DSM 5692
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Kyrpides, N.
author: Mavromatis, K.
author: Ivanova, N.
author: Mikhailova, N.
author: Munk, A.C.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Markowitz, V.
author: Cheng, J.-F.
author: Hugenholtz, P.
author: Woyke, T.
author: Wu, D.
author: Spring, S.
author: Klenk, H.-P.
author: Eisen, J.A.
journal: Unpublished

3
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Kyrpides, N.
author: Mavromatis, K.
author: Ivanova, N.
author: Mikhailova, N.
author: Munk, A.C.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Markowitz, V.
author: Cheng, J.-F.
author: Hugenholtz, P.
author: Woyke, T.
author: Wu, D.
author: Spring, S.
author: Klenk, H.-P.
author: Eisen, J.A.
journal: Submitted (08-SEP-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45263:1
position: 45263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-45263:1:source
so part of: sequence
organism: Desulfohalobium retbaense DSM 5692
mol type: genomic DNA
strain: DSM 5692
culture collection: DSM:5692
type material: type strain of Desulfohalobium retbaense
plasmid: pDRET01
country: Senegal: Lake Retba
lat lon: 14.833333 N 17.233333 W

485915
type: Taxonomy
SIO_000068: taxonomy

DRET_RS12530
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
gene: parA
locus tag: DRET_RS12530
old locus tag: Dret_2500
pseudo: true
so part of: sequence
location: 28..651
location: region:28-651:1
so has part: feature:28-651:1:exon
subclass of: SO_0000010

position:28:1
position: 28
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:651:1
position: 651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28-651:1:exon

DRET_RS12530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
gene: parA
locus tag: DRET_RS12530
old locus tag: Dret_2500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006924212.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ParA family partition ATPase
SIO_010081: DRET_RS12530
subclass of: SO_0000673
so part of: DRET_RS12530
location: 28..651
location: region:28-651:1
so has part: feature:28-651:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28-651:1:exon

DRET_RS12535
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12535
old locus tag: Dret_2501
so part of: sequence
location: 661..888
location: region:661-888:1
so has part: feature:661-888:1:exon
subclass of: SO_0000010

position:661:1
position: 661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:888:1
position: 888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:661-888:1:exon

DRET_RS12535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12535
old locus tag: Dret_2501
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012813882.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partition protein ParG
translation: MAKKVGLGPRPTRKAKSDQSQNAWVSGADQGAEAKKRLTIDISESLHRRIKADCASRGTKIADEVRALLAEKFEG
SIO_010081: DRET_RS12535
subclass of: SO_0000673
so part of: DRET_RS12535
location: 661..888
location: region:661-888:1
so has part: feature:661-888:1:exon

WP_012813873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:661-888:1:exon

DRET_RS12540
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12540
old locus tag: Dret_2502
so part of: sequence
location: complement(930..1361)
location: region:930-1361:-1
so has part: feature:930-1361:-1:exon
subclass of: SO_0000010

position:930:-1
position: 930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1361:-1
position: 1361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:930-1361:-1:exon

DRET_RS12540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12540
old locus tag: Dret_2502
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVMEFDLDFGHERRSFRQGSRVYSINLERFWWQELERVTAGAEERRRWVLAWIEDADILKVNRAALVRARIHQLVVEYGYTAEPEPDPVLVRVERIRQLRRKGTSWWDVADTLNNEGLPPLSGSGQWSAEGARAFYRSNIPKE
SIO_010081: DRET_RS12540
subclass of: SO_0000673
so part of: DRET_RS12540
location: complement(930..1361)
location: region:930-1361:-1
so has part: feature:930-1361:-1:exon

WP_012813874.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:930-1361:-1:exon

DRET_RS12545
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12545
old locus tag: Dret_2503
so part of: sequence
location: complement(1500..1853)
location: region:1500-1853:-1
so has part: feature:1500-1853:-1:exon
subclass of: SO_0000010

position:1500:-1
position: 1500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1853:-1
position: 1853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1500-1853:-1:exon

DRET_RS12545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12545
old locus tag: Dret_2503
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015752780.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MQVRTKKHHTDTVDIRITGPKEKKAEVLRDLKKHGYVDTSDCVPWRELFPELEVEPEYSVILRAARNRSGLTQVELSEKTGIAQSHLSSMENGKLEIGKDRAKRLAEVLNLDYRIFL
SIO_010081: DRET_RS12545
subclass of: SO_0000673
so part of: DRET_RS12545
location: complement(1500..1853)
location: region:1500-1853:-1
so has part: feature:1500-1853:-1:exon

WP_012813875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1500-1853:-1:exon

DRET_RS12550
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12550
old locus tag: Dret_2504
so part of: sequence
location: complement(1822..2100)
location: region:1822-2100:-1
so has part: feature:1822-2100:-1:exon
subclass of: SO_0000010

position:1822:-1
position: 1822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2100:-1
position: 2100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1822-2100:-1:exon

DRET_RS12550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12550
old locus tag: Dret_2504
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015752319.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAWTVKVKNKVKKNLLKLPAVARDNFLVLLREMEDAGPVRGNWPNYSKLGPNKHHCHIKGGQPTYVVVWEEVGEEINLIEVTYAGTHEKAPY
SIO_010081: DRET_RS12550
subclass of: SO_0000673
so part of: DRET_RS12550
location: complement(1822..2100)
location: region:1822-2100:-1
so has part: feature:1822-2100:-1:exon

WP_012813876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1822-2100:-1:exon

DRET_RS13540
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS13540
so part of: sequence
location: complement(2508..2723)
location: region:2508-2723:-1
so has part: feature:2508-2723:-1:exon
subclass of: SO_0000010

position:2508:-1
position: 2508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2723:-1
position: 2723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2508-2723:-1:exon

DRET_RS13540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS13540
inference: COORDINATES: protein motif:HMM:NF013540.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MWTRVTLFPGVNSFPSLRTSPNTASFCRQPGNRSGLTQVEFSEKTGIAQSHLLSMENGKLEIGKDQAKRLA
SIO_010081: DRET_RS13540
subclass of: SO_0000673
so part of: DRET_RS13540
location: complement(2508..2723)
location: region:2508-2723:-1
so has part: feature:2508-2723:-1:exon

WP_244147949.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2508-2723:-1:exon

DRET_RS12555
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12555
old locus tag: Dret_2506
so part of: sequence
location: 2835..3653
location: region:2835-3653:1
so has part: feature:2835-3653:1:exon
subclass of: SO_0000010

position:2835:1
position: 2835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3653:1
position: 3653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2835-3653:1:exon

DRET_RS12555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12555
old locus tag: Dret_2506
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005994224.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MMAIISLVNNKGGVGKTTMTVNLAHALANRQKNVLVIDLDSQCNSSSLLVDNKFVEESLYDILNGENDDIGKAIYSTPYDRLKCLANEEETSALEFDLSANLPDNYNILRANIKEYVNDKFDYTLIDCPPNLGFFVINALVASDFVIVPVMCGSRFSIEGLTKAIKLVHYIQQEDDNDPTRVSNPDLRFLRLAINSIDKRTTMSKVILERLKKNFGEDQIFETNIGMSTVFHQAEDLNKTVIRHAPRSVGARAYRDLAKELCGVLGDSDEGE
SIO_010081: DRET_RS12555
subclass of: SO_0000673
so part of: DRET_RS12555
location: 2835..3653
location: region:2835-3653:1
so has part: feature:2835-3653:1:exon

WP_012813878.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2835-3653:1:exon

DRET_RS13190
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS13190
old locus tag: Dret_2507
so part of: sequence
location: 3657..5123
location: region:3657-5123:1
so has part: feature:3657-5123:1:exon
subclass of: SO_0000010

position:3657:1
position: 3657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5123:1
position: 5123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3657-5123:1:exon

DRET_RS13190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS13190
old locus tag: Dret_2507
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MAKKKRRSLYDTLSARDSGQDDELRETFKRVREINTKQSTETTPPSENSNKKVQAQDKSPSGPLIHTAQTNRSNIPITHSDQQSNNKENNKSKQEFNKDSLGDTNRSPKAPTNTAQNNRSSKALANTAQVDRPNKPLENNHTAHLNSSNEPFTRALRAQSLSGTNERYAQAVQMSGSEESHEPTEDPQNILLKPKSSIRSRNQKKIFDYLQRIGSQTTTLTYISNITGVPYSTTRRIISKFKAEGLIYYRTLFVKDVGWCAKIWIINSEGETPNRAVQMSGINGRYEWAVSNASKIDRESIYLKEGGVGGDGQDQPDNSSSSSEARLNQLTDEDIAFFWPKLHQSGFGAHQVQQIVQRLSKVDKKADKVIQGLDHAEWELDQGKMTDKEGNPVGNPCSYVFSSLAREGYYRRPSGYISPEEQAELDAKEEADRLQQLGKEKKESQFKAWKANLSEEELNQILACKTHKGPTDPWLRQYWEKTIYYTTK
SIO_010081: DRET_RS13190
subclass of: SO_0000673
so part of: DRET_RS13190
location: 3657..5123
location: region:3657-5123:1
so has part: feature:3657-5123:1:exon

WP_012813879.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3657-5123:1:exon

DRET_RS13990
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS13990
so part of: sequence
location: 5282..5830
location: region:5282-5830:1
so has part: feature:5282-5830:1:exon
subclass of: SO_0000010

position:5282:1
position: 5282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5830:1
position: 5830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5282-5830:1:exon

DRET_RS13990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS13990
inference: COORDINATES: protein motif:HMM:NF016724.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase family protein
translation: MTLENPKYSQAERFGRYTGALDPVIELWEDIPGGVAFPRGWTRHAIVLLQRAGIQWKIDDQRRALDPVSFSFVGKLRDSQAQAVQGVLSRDFGVLESGTGSGKTVMALAVIAERQQPTLILVHNKELLHQWRERIKAFLALDKVGQIGDGKAEVRPVTVGIVNSVRKRLDSLPESFGHLVVG
SIO_010081: DRET_RS13990
subclass of: SO_0000673
so part of: DRET_RS13990
location: 5282..5830
location: region:5282-5830:1
so has part: feature:5282-5830:1:exon

WP_244147950.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5282-5830:1:exon

DRET_RS13995
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS13995
so part of: sequence
location: 5892..6566
location: region:5892-6566:1
so has part: feature:5892-6566:1:exon
subclass of: SO_0000010

position:5892:1
position: 5892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6566:1
position: 6566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5892-6566:1:exon

DRET_RS13995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS13995
inference: COORDINATES: protein motif:HMM:NF012493.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helicase-related protein
translation: MLGLSATAYRRDGLTRLIYLTLGDRTHWVDPQRLREIGAVLTPKIIRRETVFQYDYADDYPAMVSTLAENEDRNRQIVNDVIAQVQDQAGTALVVSDRVTHCEALAELVRDAGQGAEVLTGKTPKEGRERIVNAIQAGKVPVLCSTIQLLGEGFDCSGLSSLFLTTPVRFRGRLLQIVGRILRPGTGKRPRVFDYVDVHVGLLQHQAQKRAQALEGVVYGAASI
SIO_010081: DRET_RS13995
subclass of: SO_0000673
so part of: DRET_RS13995
location: 5892..6566
location: region:5892-6566:1
so has part: feature:5892-6566:1:exon

WP_244147951.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5892-6566:1:exon

DRET_RS12575
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
gene: parA
locus tag: DRET_RS12575
old locus tag: Dret_2510
so part of: sequence
location: 6987..7610
location: region:6987-7610:1
so has part: feature:6987-7610:1:exon
subclass of: SO_0000010

position:6987:1
position: 6987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7610:1
position: 7610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6987-7610:1:exon

DRET_RS12575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
gene: parA
locus tag: DRET_RS12575
old locus tag: Dret_2510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017158739.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MIISLLNQKGGVGKTTLAVSLAGQLTQLGSRVLLIDADPQGSALDWAAAREGEPLFPVVGLPRPTVHKEIQGFVGDYDHIVIDGAPRVTDLARSVIMASDVVVIPVQPSPYDIWSAEEVVGLVNEGAIYKEKLKSCFVINRKIVNTAIGRDVKEALANYDLSILDVTVGQRVVFAEAVASGLVVSEVAPKSNAATEVKAFANELLKF
SIO_010081: DRET_RS12575
subclass of: SO_0000673
so part of: DRET_RS12575
location: 6987..7610
location: region:6987-7610:1
so has part: feature:6987-7610:1:exon

WP_012813881.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6987-7610:1:exon

DRET_RS12580
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12580
old locus tag: Dret_2511
so part of: sequence
location: 7620..7847
location: region:7620-7847:1
so has part: feature:7620-7847:1:exon
subclass of: SO_0000010

position:7620:1
position: 7620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7847:1
position: 7847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7620-7847:1:exon

DRET_RS12580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12580
old locus tag: Dret_2511
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012813873.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partition protein ParG
translation: MAKKVGLGPKPSKKSDGDKRQDAWVSGEDKSAEKKKRLTIDIPESLHRKIKADCAIRGAKIADEIRVLLAERYDT
SIO_010081: DRET_RS12580
subclass of: SO_0000673
so part of: DRET_RS12580
location: 7620..7847
location: region:7620-7847:1
so has part: feature:7620-7847:1:exon

WP_012813882.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7620-7847:1:exon

DRET_RS12585
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12585
old locus tag: Dret_2512
so part of: sequence
location: 8925..9404
location: region:8925-9404:1
so has part: feature:8925-9404:1:exon
subclass of: SO_0000010

position:8925:1
position: 8925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9404:1
position: 9404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8925-9404:1:exon

DRET_RS12585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12585
old locus tag: Dret_2512
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MELVCVVRYNLYFGGFMHFRNFVAFFCIFSAFFVFLGCSSGEMGKDEIEDQIYSQFIESSKKQMKAQLPYLYRISPESQDMTKEEFIKKSMKAMDTIQFDSFTITNRKKIGEEKNKERVEFIISASMEKDGNRQSLVKDKEGTAMLTKKDSGWTITSVK
SIO_010081: DRET_RS12585
subclass of: SO_0000673
so part of: DRET_RS12585
location: 8925..9404
location: region:8925-9404:1
so has part: feature:8925-9404:1:exon

WP_012813883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8925-9404:1:exon

DRET_RS12590
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12590
old locus tag: Dret_2513
so part of: sequence
location: 9533..10174
location: region:9533-10174:1
so has part: feature:9533-10174:1:exon
subclass of: SO_0000010

position:9533:1
position: 9533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10174:1
position: 10174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9533-10174:1:exon

DRET_RS12590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12590
old locus tag: Dret_2513
inference: COORDINATES: protein motif:HMM:NF027470.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4852 domain-containing protein
translation: MKKIFSLALLCALVCSTSAMAHDLNWDNLMMAAVKMQPHFDYEANVDSYMKIYRSDVWDRYKNDEFEIQDKRNETIKMMKDRFSSFSLDEEFTIYTSLKFGSYDFDKQVFPLNSFSANSYLVERRYNNWSFPKAYKVFFINPEKIGDINMEKDKAKNFLKKRKSSYGNVDRNVNAKIKFSVTDLKNGRNELEAKLEHVTIYSDDQMSKVIQKF
SIO_010081: DRET_RS12590
subclass of: SO_0000673
so part of: DRET_RS12590
location: 9533..10174
location: region:9533-10174:1
so has part: feature:9533-10174:1:exon

WP_012813884.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9533-10174:1:exon

DRET_RS12595
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12595
old locus tag: Dret_2515
so part of: sequence
location: 10786..11451
location: region:10786-11451:1
so has part: feature:10786-11451:1:exon
subclass of: SO_0000010

position:10786:1
position: 10786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11451:1
position: 11451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10786-11451:1:exon

DRET_RS12595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12595
old locus tag: Dret_2515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015752054.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thermonuclease family protein
translation: MRRFTANARIALARYVLVWIIVLLSPGLVFSWTGKAVHIKDGDTIVVLRDHSEVDVRLYGIDCPEKRQDFGTRAKRFTAKMVGMQRVEVQEMDVDRYGRVVGLVALAGSGESLNAALLYNGLAWVYHKYCGQDFCGRWITLERKAKLAKRGMWGQPNPIPPWEWRHGGRSGSQSRSEAGGDKDCSDFSTQGQAQRFFEAHQPGDPHRLDGDGDGQVCEGLP
SIO_010081: DRET_RS12595
subclass of: SO_0000673
so part of: DRET_RS12595
location: 10786..11451
location: region:10786-11451:1
so has part: feature:10786-11451:1:exon

WP_012813886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10786-11451:1:exon

DRET_RS12600
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12600
old locus tag: Dret_2517
so part of: sequence
location: 11686..12366
location: region:11686-12366:1
so has part: feature:11686-12366:1:exon
subclass of: SO_0000010

position:11686:1
position: 11686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12366:1
position: 12366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11686-12366:1:exon

DRET_RS12600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12600
old locus tag: Dret_2517
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGILNSFFRFFKNENTIYKNEIKSFIDSNIEDTGIDINDENLSAKDIAYICENIINSVSFTSALHSTKKHPTSKFYEKNSKDNLALFYSYFLELYYIISIQVFGIFDSEKLEKASQILIEKKLEREEQELQALKDDKTIKKIGIPEEVIQKTEKEIGDSLYKYKGYHIKYAKKEERKTPMFKCATTITKELYPKYSKKIEDDIYSISYLCFTYLLEYLHPLCHKCR
SIO_010081: DRET_RS12600
subclass of: SO_0000673
so part of: DRET_RS12600
location: 11686..12366
location: region:11686-12366:1
so has part: feature:11686-12366:1:exon

WP_012813888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11686-12366:1:exon

DRET_RS12605
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12605
old locus tag: Dret_2518
pseudo: true
so part of: sequence
location: 12631..>12948
location: region:12631-12948:1
so has part: feature:12631-12948:1:exon
subclass of: SO_0000010

position:12631:1
position: 12631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12948:1
position: 12948
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12631-12948:1:exon

DRET_RS12605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12605
old locus tag: Dret_2518
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015750832.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ISKra4 family transposase
SIO_010081: DRET_RS12605
subclass of: SO_0000673
so part of: DRET_RS12605
location: 12631..>12948
location: region:12631-12948:1
so has part: feature:12631-12948:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12631-12948:1:exon

DRET_RS12610
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12610
old locus tag: Dret_2519
so part of: sequence
location: 13024..13407
location: region:13024-13407:1
so has part: feature:13024-13407:1:exon
subclass of: SO_0000010

position:13024:1
position: 13024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13407:1
position: 13407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13024-13407:1:exon

DRET_RS12610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12610
old locus tag: Dret_2519
inference: COORDINATES: protein motif:HMM:NF024908.2
GO function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSQRSDQETGSCPGAAAPGQQQKNQKPQRISAKMKTRVVQRVMRGESLELLAREFGTSVAKVSQWRDEFIQAGEEAMKKDRGSDEKDRKIANLEQKLGETTMDYELLQDKVRRLEQKRPLARRKSKK
SIO_010081: DRET_RS12610
subclass of: SO_0000673
so part of: DRET_RS12610
location: 13024..13407
location: region:13024-13407:1
so has part: feature:13024-13407:1:exon

WP_012813890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13024-13407:1:exon

DRET_RS12615
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12615
old locus tag: Dret_2520
so part of: sequence
location: 13446..14297
location: region:13446-14297:1
so has part: feature:13446-14297:1:exon
subclass of: SO_0000010

position:13446:1
position: 13446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14297:1
position: 14297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13446-14297:1:exon

DRET_RS12615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12615
old locus tag: Dret_2520
inference: COORDINATES: protein motif:HMM:NF025063.2
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: integrase core domain-containing protein
translation: MRRVCRVWRIPRSTVYHRLQQSKQCSSRPRGPKAFYSDAELVAHIKDLLEQSPFHGEGYRKIWARLRLQDIRTSPRRVLRVMRENNLLVFQNTSIHPGPKAHDGTITQESSHVMWGTDMTKAYTIRDGWVSVFGAVDHFSAACMGLHAAKPGTRFEAVEPVRQGVREAFGAIEQHMAQGITMRHDCGSQYLSKVFQDELRFLGFTISPAFVRSPQCNGCIERFFRTLKENLLWVRSFQDIEELSQALQEFKEQYNTQWLIGRHGYQTPYQVLASHRPQQGLAA
SIO_010081: DRET_RS12615
subclass of: SO_0000673
so part of: DRET_RS12615
location: 13446..14297
location: region:13446-14297:1
so has part: feature:13446-14297:1:exon

WP_279614526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13446-14297:1:exon

DRET_RS13550
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS13550
old locus tag: Dret_2521
pseudo: true
so part of: sequence
location: <14335..15426
location: region:14335-15426:1
so has part: feature:14335-15426:1:exon
subclass of: SO_0000010

position:14335:1
position: 14335
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:15426:1
position: 15426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14335-15426:1:exon

DRET_RS13550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS13550
old locus tag: Dret_2521
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015750832.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ISKra4-like element ISDere1 family transposase
SIO_010081: DRET_RS13550
subclass of: SO_0000673
so part of: DRET_RS13550
location: <14335..15426
location: region:14335-15426:1
so has part: feature:14335-15426:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14335-15426:1:exon

DRET_RS13555
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
gene: dcm
locus tag: DRET_RS13555
old locus tag: Dret_2522
so part of: sequence
location: 15496..16902
location: region:15496-16902:1
so has part: feature:15496-16902:1:exon
subclass of: SO_0000010

position:15496:1
position: 15496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16902:1
position: 16902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15496-16902:1:exon

DRET_RS13555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
gene: dcm
locus tag: DRET_RS13555
old locus tag: Dret_2522
EC number: 2.1.1.37
inference: COORDINATES: protein motif:HMM:NF012372.2
GO function: GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA (cytosine-5-)-methyltransferase
translation: MNIAGNQLRETRLELGLSQARLAELTGISQHLLSAYELEKSTLAPDLIQKLASTLQDKEQIRNITGRKKRYRNHEYKFTPKQSGRSSRASRTNGNESFINALSIIEKKHANPKGEALNAISLFSGCGGFSLGFSAAGFNVRGFLELDPGLRKIYRLNFPNSFEMGGDITQIQDAKIKNYKSLIGDIDVIIGGPPCQGFSLSGKRDVNDPRNTLFKHYLRFVDAFRPKIAIMENVRLLSSMKNSEGNLVKCDIESDFHNHGYNVQSFEINAKDYGVPQHRERIIFVAVRNDLSIKSSIPDPKFGYVEDLLSNKIPYRTFGDACSDLEFLESGEKGSDVFHAAVRHPSHVIEWLWDVPEGKSAHDNEDPKLRPPSGYNTTYKRQIWDEPASTVQTTFGMISGCRNVHPIATRSLTIREAARIQSFPDSFKLVGRLGIIRTGIGNAVPPLLAYELGEHFKEFLNFVEVPSL
SIO_010081: DRET_RS13555
subclass of: SO_0000673
so part of: DRET_RS13555
location: 15496..16902
location: region:15496-16902:1
so has part: feature:15496-16902:1:exon

WP_012813893.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15496-16902:1:exon

DRET_RS12630
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12630
old locus tag: Dret_2523
so part of: sequence
location: complement(16873..17844)
location: region:16873-17844:-1
so has part: feature:16873-17844:-1:exon
subclass of: SO_0000010

position:16873:-1
position: 16873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17844:-1
position: 17844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16873-17844:-1:exon

DRET_RS12630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12630
old locus tag: Dret_2523
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALTPSDNIHALQIQAGALGRKTGHAFEDKITEELNGLCCPIKVQELNTHVLVGDPALLLLRYIAKKEGLGEIQTISSLSTGALATSEDGKRFLSIENKSISRCKSDLIITIEDPNTRITVGVSTKQCNKKTPTNAQLYFTTAVGFSRLLMNNGISVSDTAINALRQFCGDPGFRPLDDPTKLENRLFDTRRFFWEEIDKNGREEWEAIFSQNQNDVSRLLFQKAYLDDPFSPEYLLHKTKASDGWHNTEVAIYSINEIISLSKRYQGFYTKKYSVKKGRYKDPVGVQHLAPRFGIIQMQRGGQKQHPTQLQFNLEAGYFYKI
SIO_010081: DRET_RS12630
subclass of: SO_0000673
so part of: DRET_RS12630
location: complement(16873..17844)
location: region:16873-17844:-1
so has part: feature:16873-17844:-1:exon

WP_012813894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16873-17844:-1:exon

DRET_RS12635
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12635
old locus tag: Dret_2524
so part of: sequence
location: complement(17825..18085)
location: region:17825-18085:-1
so has part: feature:17825-18085:-1:exon
subclass of: SO_0000010

position:17825:-1
position: 17825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18085:-1
position: 18085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17825-18085:-1:exon

DRET_RS12635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12635
old locus tag: Dret_2524
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018999759.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MSSRTSNYDPMMKPLEELGQEIKSRRKQLGLSQEKLADKCGFDRTYISMVERGKRNPSLLNLLKIAKGLEASVSELTEVINGANSE
SIO_010081: DRET_RS12635
subclass of: SO_0000673
so part of: DRET_RS12635
location: complement(17825..18085)
location: region:17825-18085:-1
so has part: feature:17825-18085:-1:exon

WP_244147952.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17825-18085:-1:exon

DRET_RS12645
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
gene: istB
locus tag: DRET_RS12645
old locus tag: Dret_2525
pseudo: true
so part of: sequence
location: 18471..19216
location: region:18471-19216:1
so has part: feature:18471-19216:1:exon
subclass of: SO_0000010

position:18471:1
position: 18471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19216:1
position: 19216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18471-19216:1:exon

DRET_RS12645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
gene: istB
locus tag: DRET_RS12645
old locus tag: Dret_2525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007946713.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS21-like element helper ATPase IstB
SIO_010081: DRET_RS12645
subclass of: SO_0000673
so part of: DRET_RS12645
location: 18471..19216
location: region:18471-19216:1
so has part: feature:18471-19216:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18471-19216:1:exon

DRET_RS12650
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12650
old locus tag: Dret_2527
so part of: sequence
location: 19838..20239
location: region:19838-20239:1
so has part: feature:19838-20239:1:exon
subclass of: SO_0000010

position:19838:1
position: 19838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20239:1
position: 20239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19838-20239:1:exon

DRET_RS12650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12650
old locus tag: Dret_2527
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008173657.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKLFWKLFPPYEVRLTIEAVNAFLDESAGPSKSILEPEVVSIAKDAEKTIYSVRIDRIKPDELALLLVTNVIGRHLSSGQHHTYRGVLNGTGKDMLRVWHTAQKAMLERDFVTELEVEKDSHWVMEQVKSAG
SIO_010081: DRET_RS12650
subclass of: SO_0000673
so part of: DRET_RS12650
location: 19838..20239
location: region:19838-20239:1
so has part: feature:19838-20239:1:exon

WP_012813896.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19838-20239:1:exon

DRET_RS12655
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12655
old locus tag: Dret_2528
so part of: sequence
location: 20310..20822
location: region:20310-20822:1
so has part: feature:20310-20822:1:exon
subclass of: SO_0000010

position:20310:1
position: 20310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20822:1
position: 20822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20310-20822:1:exon

DRET_RS12655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12655
old locus tag: Dret_2528
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIDNCPYAFEELAEEILPAYFEELQKSISAPHEMATFGQKGMGKTTILKRLNRSSDFPGCYVLLEESKPIYVGISRSIVQRLLQHVKGTYHYDASLAYRIASQIVQHGNQRNVAMTDPDFKNEFEKAKNYIKSLKVAFIQIHNYLEIYMFEAYCAIKLDTAQWNTFKTH
SIO_010081: DRET_RS12655
subclass of: SO_0000673
so part of: DRET_RS12655
location: 20310..20822
location: region:20310-20822:1
so has part: feature:20310-20822:1:exon

WP_052293342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20310-20822:1:exon

DRET_RS12660
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12660
old locus tag: Dret_2529
so part of: sequence
location: complement(20925..21581)
location: region:20925-21581:-1
so has part: feature:20925-21581:-1:exon
subclass of: SO_0000010

position:20925:-1
position: 20925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21581:-1
position: 21581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20925-21581:-1:exon

DRET_RS12660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12660
old locus tag: Dret_2529
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MSIAPAVPQSSPAIFQTGKLKIKYLMPDELQRLTDTWRKWFDASPTPTKRRIRGRHWLIFLTLRHTGARLGEVLQIRDDFDINTRESEIRVTTLKRGTGEKRLVPVVPELISEIASYLMDYPEIRGKLFSLDASNFRKRFYDLADQAGMLEEEYMDGRRELFPHPHTLRHTRAMELLSAGVPVTAVQDLLGHSSLLTTAQYLRLSGQDVKNTLRSRGL
SIO_010081: DRET_RS12660
subclass of: SO_0000673
so part of: DRET_RS12660
location: complement(20925..21581)
location: region:20925-21581:-1
so has part: feature:20925-21581:-1:exon

WP_012813898.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20925-21581:-1:exon

DRET_RS13715
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS13715
pseudo: true
so part of: sequence
location: <21739..21989
location: region:21739-21989:1
so has part: feature:21739-21989:1:exon
subclass of: SO_0000010

position:21739:1
position: 21739
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:21989:1
position: 21989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21739-21989:1:exon

DRET_RS13715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS13715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015750832.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ISKra4 family transposase
SIO_010081: DRET_RS13715
subclass of: SO_0000673
so part of: DRET_RS13715
location: <21739..21989
location: region:21739-21989:1
so has part: feature:21739-21989:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21739-21989:1:exon

DRET_RS13565
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS13565
old locus tag: Dret_2530
so part of: sequence
location: 22822..23283
location: region:22822-23283:1
so has part: feature:22822-23283:1:exon
subclass of: SO_0000010

position:22822:1
position: 22822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23283:1
position: 23283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22822-23283:1:exon

DRET_RS13565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS13565
old locus tag: Dret_2530
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEFTKDEILLRACKILVQNFANQVEERREVVHTRIFSYFLHPEINYVHYGQSSSVTSHTKNHTEHAVPCSVLINECFRLIKENKLTYDQISHLLKKHWKIVTITKKESRKLDYYLGYKSTMPTNWSFEYGDTFKRFNIANIKLISEVSKLKL
SIO_010081: DRET_RS13565
subclass of: SO_0000673
so part of: DRET_RS13565
location: 22822..23283
location: region:22822-23283:1
so has part: feature:22822-23283:1:exon

WP_012813899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22822-23283:1:exon

DRET_RS12665
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12665
old locus tag: Dret_2531
so part of: sequence
location: 23319..23747
location: region:23319-23747:1
so has part: feature:23319-23747:1:exon
subclass of: SO_0000010

position:23319:1
position: 23319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23747:1
position: 23747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23319-23747:1:exon

DRET_RS12665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12665
old locus tag: Dret_2531
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGEFIHIAENIAGHINHIADNQKISIEELGELATEVSGKNGINIYPGIKGAKCHTLSIFISLSSPAYVKGMRGHLSFRQAIEKMVQHMQGTCINKTNIAILITDNWDPAALEEWRDNLHKLATAVHIETYLISGKNVSEIYV
SIO_010081: DRET_RS12665
subclass of: SO_0000673
so part of: DRET_RS12665
location: 23319..23747
location: region:23319-23747:1
so has part: feature:23319-23747:1:exon

WP_012813900.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23319-23747:1:exon

DRET_RS12670
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12670
old locus tag: Dret_2532
so part of: sequence
location: 23849..24571
location: region:23849-24571:1
so has part: feature:23849-24571:1:exon
subclass of: SO_0000010

position:23849:1
position: 23849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24571:1
position: 24571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23849-24571:1:exon

DRET_RS12670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12670
old locus tag: Dret_2532
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDFSNNNISSLVILGTDIPSSKLNDSKIENINGLKVDIIRFCELNIENINRYDVAFFMNPKTDQQEFTKIPGKNKKKEKEVLFCFYIVNENQKMAKNLRYNESIIITEEKNEIETMLTLIYTIYFEHMISIDLHDLINIFGGKYFKKTTVSISDIYSLGRLLNKLKPKIKQNIKSSYRNFVHISFPNGQKYKLSDIESIMNIYNLAMENCPSIYFSDTLVHDIVSIKLDIFFEHQVSRYP
SIO_010081: DRET_RS12670
subclass of: SO_0000673
so part of: DRET_RS12670
location: 23849..24571
location: region:23849-24571:1
so has part: feature:23849-24571:1:exon

WP_012813901.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23849-24571:1:exon

DRET_RS14000
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS14000
pseudo: true
so part of: sequence
location: <24652..>25032
location: region:24652-25032:1
so has part: feature:24652-25032:1:exon
subclass of: SO_0000010

position:24652:1
position: 24652
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:25032:1
position: 25032
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24652-25032:1:exon

DRET_RS14000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS14000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015750832.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ISKra4 family transposase
SIO_010081: DRET_RS14000
subclass of: SO_0000673
so part of: DRET_RS14000
location: <24652..>25032
location: region:24652-25032:1
so has part: feature:24652-25032:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24652-25032:1:exon

DRET_RS13775
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS13775
old locus tag: Dret_2533
so part of: sequence
location: 25305..25475
location: region:25305-25475:1
so has part: feature:25305-25475:1:exon
subclass of: SO_0000010

position:25305:1
position: 25305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25475:1
position: 25475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25305-25475:1:exon

DRET_RS13775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS13775
old locus tag: Dret_2533
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDTLREALAVLVDEERPIQERFLEAINMAYGLSGNRQNIRFQSTSQSKKNSYYQPV
SIO_010081: DRET_RS13775
subclass of: SO_0000673
so part of: DRET_RS13775
location: 25305..25475
location: region:25305-25475:1
so has part: feature:25305-25475:1:exon

WP_153304102.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25305-25475:1:exon

DRET_RS13570
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS13570
so part of: sequence
location: 25509..25868
location: region:25509-25868:1
so has part: feature:25509-25868:1:exon
subclass of: SO_0000010

position:25509:1
position: 25509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25868:1
position: 25868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25509-25868:1:exon

DRET_RS13570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS13570
inference: COORDINATES: protein motif:HMM:NF024183.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zinc ribbon domain-containing protein
translation: MGHFIFIMLHLIAVLFGFVFLIITIPLHLIYSSTNKFTKAKNSAFDYSSNNGVYAECPFCKQKINKDASKCPYCQEWVINDGQKPKIVDSRGRRVKVCPHCGRKNKDDDYICMSCSKPI
SIO_010081: DRET_RS13570
subclass of: SO_0000673
so part of: DRET_RS13570
location: 25509..25868
location: region:25509-25868:1
so has part: feature:25509-25868:1:exon

WP_083777260.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25509-25868:1:exon

DRET_RS12680
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12680
old locus tag: Dret_2534
pseudo: true
so part of: sequence
location: complement(26056..>27168)
location: region:26056-27168:-1
so has part: feature:26056-27168:-1:exon
subclass of: SO_0000010

position:26056:-1
position: 26056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27168:-1
position: 27168
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26056-27168:-1:exon

DRET_RS12680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12680
old locus tag: Dret_2534
inference: COORDINATES: protein motif:HMM:NF033559.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS1634 family transposase
SIO_010081: DRET_RS12680
subclass of: SO_0000673
so part of: DRET_RS12680
location: complement(26056..>27168)
location: region:26056-27168:-1
so has part: feature:26056-27168:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26056-27168:-1:exon

DRET_RS12685
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12685
old locus tag: Dret_2535
so part of: sequence
location: 27776..28258
location: region:27776-28258:1
so has part: feature:27776-28258:1:exon
subclass of: SO_0000010

position:27776:1
position: 27776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28258:1
position: 28258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27776-28258:1:exon

DRET_RS12685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12685
old locus tag: Dret_2535
inference: COORDINATES: protein motif:HMM:NF013677.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MPPHLPKQMKEAAVHQALTGHSTTKQIAKEYGVGLSSLNRWIKNAKNSGAPGMAQKEKRPKDWTREERLNALLEAAKLSDEELGAWCRQKGLHTHHLEKWRKELAQEQPSAEKTTSKQLKKEIKELKSELNRKDKALAETSALLVLKKKADAIWGDKEDD
SIO_010081: DRET_RS12685
subclass of: SO_0000673
so part of: DRET_RS12685
location: 27776..28258
location: region:27776-28258:1
so has part: feature:27776-28258:1:exon

WP_012813903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27776-28258:1:exon

DRET_RS12690
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12690
old locus tag: Dret_2536
so part of: sequence
location: 28270..29301
location: region:28270-29301:1
so has part: feature:28270-29301:1:exon
subclass of: SO_0000010

position:28270:1
position: 28270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29301:1
position: 29301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28270-29301:1:exon

DRET_RS12690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12690
old locus tag: Dret_2536
inference: COORDINATES: protein motif:HMM:NF033516.0
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MKKYAITLIDEACRAGARMKKACEILGISVRSLQRWRQPETIEDKRKGSSIFPSNKISEIERQRILKVLSSAEFRDKTPHQIVAELADQGKYLASEASMYRILKEVGQNTHRQDSSPKKHQKPTELVATDANQIWTWDITYLPSATKGSFFYLYMVMDLYSRKVVAWQVHDREDATLASEVIREACYQEGVAREQLVLHSDNGSPMKGATMLATLQQLGVMPSFSRPHVSNDNPYSESLFKTLKYRPWYPHRPFQCVSEAREWVEGFVQWYNFEHRHSKLEYVTPNERHTGQDKDILANRRAVYQRARQKQPERWSGQTRQWATTAAVTLNKHRTSKAEKSAA
SIO_010081: DRET_RS12690
subclass of: SO_0000673
so part of: DRET_RS12690
location: 28270..29301
location: region:28270-29301:1
so has part: feature:28270-29301:1:exon

WP_148214110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28270-29301:1:exon

DRET_RS12695
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12695
old locus tag: Dret_2537
so part of: sequence
location: 30203..30607
location: region:30203-30607:1
so has part: feature:30203-30607:1:exon
subclass of: SO_0000010

position:30203:1
position: 30203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30607:1
position: 30607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30203-30607:1:exon

DRET_RS12695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12695
old locus tag: Dret_2537
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018126032.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MucR family transcriptional regulator
translation: MEDHMKQALEIVKAQAGVRTMTEEEMTSMVANIASKLKRIEGGEQEPQEEQKQEPAVDPKKAIREKSVVCLECGKTFKVLTKRHLATHGLTPAEYKAKWGFKKTQSLIAKSLARERKKKMQEMQLWKRREKKKS
SIO_010081: DRET_RS12695
subclass of: SO_0000673
so part of: DRET_RS12695
location: 30203..30607
location: region:30203-30607:1
so has part: feature:30203-30607:1:exon

WP_012813905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30203-30607:1:exon

DRET_RS13575
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS13575
so part of: sequence
location: complement(30690..30965)
location: region:30690-30965:-1
so has part: feature:30690-30965:-1:exon
subclass of: SO_0000010

position:30690:-1
position: 30690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30965:-1
position: 30965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30690-30965:-1:exon

DRET_RS13575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS13575
inference: COORDINATES: protein motif:HMM:NF025637.2
GO function: GO:0004519 - endonuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease signature motif containing protein
translation: MSTHNFSKCAPEHPIFPVDWKEALFRQLGGPKEGYICPICKRRFSGPEGFKQLEGDHIIPRAKGGKTTWDNFQLLCISCNRRKSKNLIQTE
SIO_010081: DRET_RS13575
subclass of: SO_0000673
so part of: DRET_RS13575
location: complement(30690..30965)
location: region:30690-30965:-1
so has part: feature:30690-30965:-1:exon

WP_041282688.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30690-30965:-1:exon

DRET_RS13580
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS13580
old locus tag: Dret_2539
so part of: sequence
location: complement(30965..32182)
location: region:30965-32182:-1
so has part: feature:30965-32182:-1:exon
subclass of: SO_0000010

position:32182:-1
position: 32182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30965-32182:-1:exon

DRET_RS13580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS13580
old locus tag: Dret_2539
inference: COORDINATES: protein motif:HMM:NF015210.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF262 domain-containing protein
translation: MSETNVPIISNQTTAQNEAVETILRRFEEEELFVPRYQRDSDEWDESRKSLFIESVLNRLTVPAFYLAPSEDDPERLEIVDGQQRIMALYNFFKHAFELCNDDLCPYFGPSVEYAGRKYENMDDAWKRVFRRYNLTVVTLPQGMPLELRLEIFRRINEGGTPLSPQDIRLGYYSDSEEVNFCQLAGIFDIEKNGSQRKLNSCEKLSWPWADYDKEAEEWKKWWENTKTSTGQTASEMFLWFIVSSCKNSIKSIINNKNHLTKSLNLNFRNSTAEVLDIICAQWRFQSKNKNVTNILPKSDTLKESYFPVFVKWWYRFRCMCPGQANINRYRTIAMFIPALENAFGESEITEVQWSWICNFIGSSRSTAKNLGVDFPESKGRWLGNRGQEVQLDSYYKIAKAIKAK
SIO_010081: DRET_RS13580
subclass of: SO_0000673
so part of: DRET_RS13580
location: complement(30965..32182)
location: region:30965-32182:-1
so has part: feature:30965-32182:-1:exon

WP_012813906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30965-32182:-1:exon

DRET_RS12705
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12705
old locus tag: Dret_2541
so part of: sequence
location: complement(33990..34469)
location: region:33990-34469:-1
so has part: feature:33990-34469:-1:exon
subclass of: SO_0000010

position:33990:-1
position: 33990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34469:-1
position: 34469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33990-34469:-1:exon

DRET_RS12705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12705
old locus tag: Dret_2541
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEIFAWIYHSILSPLWLSLPGHELVNIFLLNIVYDLSNFSMSETLWTFAICQIIGSYLLGWVVSHLKPLYQGPTDIIPDTHRGGKLTTVAFFTPHALVALPLIWHIIRLSLMGPKAWRGKLGKCIVAALFIYGHFGASYIYFNIGDTNEILLAWLQAGL
SIO_010081: DRET_RS12705
subclass of: SO_0000673
so part of: DRET_RS12705
location: complement(33990..34469)
location: region:33990-34469:-1
so has part: feature:33990-34469:-1:exon

WP_012813908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33990-34469:-1:exon

DRET_RS13850
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS13850
old locus tag: Dret_2542
so part of: sequence
location: complement(35091..35288)
location: region:35091-35288:-1
so has part: feature:35091-35288:-1:exon
subclass of: SO_0000010

position:35091:-1
position: 35091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35288:-1
position: 35288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35091-35288:-1:exon

DRET_RS13850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS13850
old locus tag: Dret_2542
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTLLLARADSEKILRDTNAQLQHTTQRLNQVEAQIDKLTYTLDQKINAKIDHAMRQAQEKLKGSK
SIO_010081: DRET_RS13850
subclass of: SO_0000673
so part of: DRET_RS13850
location: complement(35091..35288)
location: region:35091-35288:-1
so has part: feature:35091-35288:-1:exon

WP_012813909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35091-35288:-1:exon

DRET_RS12720
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12720
old locus tag: Dret_2544
so part of: sequence
location: 35877..39185
location: region:35877-39185:1
so has part: feature:35877-39185:1:exon
subclass of: SO_0000010

position:35877:1
position: 35877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39185:1
position: 39185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35877-39185:1:exon

DRET_RS12720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12720
old locus tag: Dret_2544
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRVSGLVVQFKTAYSSKKKSWQTLSLDKAEQSIFGSVGIDKLASGEAGVWLTPRAHDSAGDTWHMAWWDVEHPDEHHTSIEANTRTAQDLFIQLDGLGLAHGLSVVLSGKGFRFLWPFVIPSDYTKAYRAMITDKGQWVGLDPSPHMAPNRWFRFLGYRGHRKQDTNPKDRHIHLLEHPAHLLDLTETTYLELVQGKPDPATFRPWMRRLLPHTTEPPPEWVELLKKYNDILRLRSHIVKLNFPKKPKPRGVDWAQIETFLTQKGIRTWDMQDNGEIFYRLTECPMCGRRDGNPWMTQAGRLKCFHANTCPAGEEHTDLQGQTFKKGLPPEKWVEGYQEIEVSPPVQEDQREKTDVKTARERIRDALRSDEDVLIRAAPGVGKTHTTLEEILPQCRDRLVLFTVPKGENVAEIYEKALSLAPEGVEIRKIRGRRREENGSGTLDFNPPPEGICYNMDYVEEVANWGYSPGLICCTGCEHQKNCPYQEQFKSLPKTGLVIAAHESAVSLPKKRHFDLWVIDENPVASLLQTKTVSPGALSQIRAKLPRRSELPLDTIKAQGEGLLKYLAGNQHEGRIYATTPPAEWKNTESVWELGGIESHKTPFAEDLSCFDQLEEENLKQWQKRLYYSEKVNFTALEWLWTATGQQAGVAYIKARADRKHPISYVLHQTKAPGMRRANQDGSETKTRIVALDGTGNKQELEALFPNRSFAEVSADVDLPGRRVHLEYNLSKTTVCGAEKYKKTPMAPQHVKAKLKEGLKCLRTEEKRVLLVTFKDAKETVLRAAQNLDPGRTFEVTHFWGNRGLNCFQECDAVICFGSPRVAPHSVKDMASSLFDDTEQQKAWTEQQGHRDVVQSIHRIRPIYSRKSVIVMGDFWPEQLGTPQFRIRAYQKNGAFDLALERLKLVAQTYGFVTRELACLHGVFCRVDTQSIAKWMELQKRFREKLEESPSEFVFFPINIFLIGNHTNKNGLLDPIKLKDTHAWNDLVSALELELGFPSLTERQSTGAGRPSRGVGTVSAARRFYHALGVVVFDESLWSGQEHFFEIPVGKLKRRVLPGQGLFEARRAKSVLLGFTSEIRHRQQKPPIEVFRDQQSSLAAVV
SIO_010081: DRET_RS12720
subclass of: SO_0000673
so part of: DRET_RS12720
location: 35877..39185
location: region:35877-39185:1
so has part: feature:35877-39185:1:exon

WP_012813911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35877-39185:1:exon

DRET_RS12725
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12725
old locus tag: Dret_2545
so part of: sequence
location: 40214..40417
location: region:40214-40417:1
so has part: feature:40214-40417:1:exon
subclass of: SO_0000010

position:40214:1
position: 40214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40417:1
position: 40417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40214-40417:1:exon

DRET_RS12725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12725
old locus tag: Dret_2545
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYRHTEGSFFRADDNDVIDMVFDNQKGAWVVDETQSIESTHKKEFRYEKKYPVMLMTRVEENFWIYI
SIO_010081: DRET_RS12725
subclass of: SO_0000673
so part of: DRET_RS12725
location: 40214..40417
location: region:40214-40417:1
so has part: feature:40214-40417:1:exon

WP_012813912.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40214-40417:1:exon

DRET_RS12730
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12730
old locus tag: Dret_2546
so part of: sequence
location: 40444..41844
location: region:40444-41844:1
so has part: feature:40444-41844:1:exon
subclass of: SO_0000010

position:40444:1
position: 40444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41844:1
position: 41844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40444-41844:1:exon

DRET_RS12730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12730
old locus tag: Dret_2546
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEIGFLRNVKKSSEQKINTRNNQKDIFSFDSGQKITLEEANHNCLVLGATGTGKTSSFVSPKLYNLIKKGYGGLIFDVKNNFTKDIQSMANMCGREADIIEVGSHNTATPINFLLGLDLESMLQSLEDIIAGSIPASGNWEFIQMGINNVKQIAKVLYYFKKNKPDERSILPNLDLIVNMLNNELLATQIFTHWKENINTSDRDQVRLKDEIENDIFNFMMPPENTGSRNSTDWYKQTTWRLSVPRKVLGEFSNGILKKKLSSKLNKTLNFEELVLKQNKIVIIRFSAISGTPGVRFSKMAKEEFYKTIYRRFELQKETKIQYVFNIMDEFQDIVNLDENSLFDDFTWVSKSREFKVINIAATQSMSSLYKLDYKERVYGMLNNFGIKIFMQNDDPNTIAWIEQCYRKNYNLTELGPAEALLIKKKMPERKIQIGIDSAQKSHDKLQDILRNSSEFCKNENRITI
SIO_010081: DRET_RS12730
subclass of: SO_0000673
so part of: DRET_RS12730
location: 40444..41844
location: region:40444-41844:1
so has part: feature:40444-41844:1:exon

WP_012813913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40444-41844:1:exon

DRET_RS12735
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12735
old locus tag: Dret_2547
so part of: sequence
location: 41841..42299
location: region:41841-42299:1
so has part: feature:41841-42299:1:exon
subclass of: SO_0000010

position:41841:1
position: 41841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42299:1
position: 42299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41841-42299:1:exon

DRET_RS12735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12735
old locus tag: Dret_2547
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSFNFYLSITIVLLLLLPQPTYSKQAPQDNIEWTRNNVEKLETFQKFKNMKLEKVINARVDLALELFNIYREVFKIKPDMRIKIRNYNIILNKSIDLMNLTEVNLHATQSAKEQFVKEFTKIAQQIDRSYLSKIKKAMALDYILFKKLYVY
SIO_010081: DRET_RS12735
subclass of: SO_0000673
so part of: DRET_RS12735
location: 41841..42299
location: region:41841-42299:1
so has part: feature:41841-42299:1:exon

WP_015750478.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41841-42299:1:exon

DRET_RS13585
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS13585
old locus tag: Dret_2548
so part of: sequence
location: 42389..43027
location: region:42389-43027:1
so has part: feature:42389-43027:1:exon
subclass of: SO_0000010

position:42389:1
position: 42389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43027:1
position: 43027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42389-43027:1:exon

DRET_RS13585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS13585
old locus tag: Dret_2548
inference: COORDINATES: protein motif:HMM:NF012376.2
GO function: GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metallophosphoesterase family protein
translation: MLLFYADAHGNFEELISVARKYHSEIKGIFLLGDQSPGQPLDQELKALGSGIIAKTYFILGNHDLESKKYIENHFCIWQNYLNKRTIDIDGICIGGFSSTYSEKSIFFSNNNKTKYTIDTLKSKEPLCCECLSGFSNMSLDILITHEAPSNHPEGCYKIDEAARLSQSSIIIHGHHHEDYESSLPFGTRIIGLGRQQVLYFTADMLTNNFYF
SIO_010081: DRET_RS13585
subclass of: SO_0000673
so part of: DRET_RS13585
location: 42389..43027
location: region:42389-43027:1
so has part: feature:42389-43027:1:exon

WP_015750479.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42389-43027:1:exon

DRET_RS12740
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12740
old locus tag: Dret_2549
so part of: sequence
location: 43139..43897
location: region:43139-43897:1
so has part: feature:43139-43897:1:exon
subclass of: SO_0000010

position:43139:1
position: 43139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43897:1
position: 43897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43139-43897:1:exon

DRET_RS12740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12740
old locus tag: Dret_2549
inference: COORDINATES: protein motif:HMM:NF025001.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MAKKIALVGFGDAPGTTTNICHTAYVLSVKMGYKTLVVDCDPKCDATLFLDKTYDSNARNNIFGYLMSDFSHNECIAKTNYKNLDVLPGSYMVSTIRESGRYNFNVSNFEDNYDIILFDTSEKTHPQNEVFLRDTDYYIAIARPEMDFFILETIEDFQIDGYMFFDKSQFAGILFSRVLQPEEFCKMYRKKVCDFFDGIATYPFWDSIIQENISAISSFRDHTLLFDRTNSVRLTRNYYRAANEISEKIVNL
SIO_010081: DRET_RS12740
subclass of: SO_0000673
so part of: DRET_RS12740
location: 43139..43897
location: region:43139-43897:1
so has part: feature:43139-43897:1:exon

WP_015750480.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43139-43897:1:exon

DRET_RS12745
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12745
old locus tag: Dret_2550
so part of: sequence
location: 43922..44275
location: region:43922-44275:1
so has part: feature:43922-44275:1:exon
subclass of: SO_0000010

position:43922:1
position: 43922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44275:1
position: 44275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43922-44275:1:exon

DRET_RS12745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12745
old locus tag: Dret_2550
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNNQYYEKTTIRAFVDIIWFPMRFFGLLYGILFLALFLKVDYEEHANFINAIGPPAVEFLSYYLGWFLEFPTVIYGALVFAFWFFFYWIYTIHGLFISACVILYHILNSILQVYPIF
SIO_010081: DRET_RS12745
subclass of: SO_0000673
so part of: DRET_RS12745
location: 43922..44275
location: region:43922-44275:1
so has part: feature:43922-44275:1:exon

WP_015750481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43922-44275:1:exon

DRET_RS12755
type: Gene
subclass of: SO_0000704
RO_0002162: 485915
locus tag: DRET_RS12755
old locus tag: Dret_2552
so part of: sequence
location: 44877..45173
location: region:44877-45173:1
so has part: feature:44877-45173:1:exon
subclass of: SO_0000010

position:44877:1
position: 44877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45173:1
position: 45173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44877-45173:1:exon

DRET_RS12755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 485915
locus tag: DRET_RS12755
old locus tag: Dret_2552
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKYNLTNAFLAWKPRGRVEVLPAKDHMDVAGTLGLDKSWGCCNPPLCRLPLEDRAAKLCVKALRDLIFRDRCSPEAVHQAISQLEEYEQIQAAEISSL
SIO_010081: DRET_RS12755
subclass of: SO_0000673
so part of: DRET_RS12755
location: 44877..45173
location: region:44877-45173:1
so has part: feature:44877-45173:1:exon

WP_015750483.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44877-45173:1:exon