Halomicrobium mukohataei DSM 12286 plasmid pHmuk01, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Halomicrobium.
The complete plasmid of Halomicrobium mukohataei DSM 12286
Submitted (10-AUG-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001689.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4083000\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Halomicrobium mukohataei arg-2, DSM 12286\nCulture Collection ID :: DSM 12286, ATCC 700874, JCM 9738, NCIMB\n 13541\nGOLD Stamp ID :: Gi02248\nGreengenes ID :: 245441\nFunding Program :: DOE-GEBA 2007\nGene Calling Method :: Prodigal\nIsolation Site :: Salinas grandes from Andes highlands in\n Jujuy Argentina\nCollection Date :: 1991\nIsolation Country :: Argentina\nLatitude :: -22.66332\nLongitude :: -66.23672\nDepth :: Sea level\nOxygen Requirement :: Facultative\nCell Shape :: Rod-shaped\nMotility :: Motile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nTemperature Optimum :: 45C\nSalinity :: Halophile\nGram Staining :: gram-\nBiotic Relationship :: Free living\nDiseases :: None\nHabitat :: Salt marsh, Soil\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/23/2023 01:25:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,442\nCDSs (total) :: 3,384\nGenes (coding) :: 3,329\nCDSs (with protein) :: 3,329\nGenes (RNA) :: 58\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 27 of 55\nPseudo Genes (incomplete) :: 43 of 55\nPseudo Genes (internal stop) :: 14 of 55\nPseudo Genes (multiple problems) :: 21 of 55\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018258943.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012807403.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258945.1
COORDINATES: similar to AA sequence:RefSeq:WP_012659241.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006221.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018258948.1
GO:0005576 - extracellular region [Evidence IEA]
GO:0016829 - lyase activity [Evidence IEA]
polysaccharide lyase family 8 super-sandwich domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018258949.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02540
COORDINATES: nucleotide motif:Rfam:14.4:RF01959
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008325033.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018258811.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018258810.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035130.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004784 - superoxide dismutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018258809.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807415.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258807.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012807417.1
COORDINATES: protein motif:HMM:NF012242.2
GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013035018.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009762257.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014053212.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008524572.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825217.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006183382.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054511.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012807426.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_012807427.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018258801.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258800.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258799.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258798.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258797.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557013.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019334.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018258795.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258794.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258793.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258792.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258791.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258790.1
NrfD/PsrC family molybdoenzyme membrane anchor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004597860.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012807441.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012807442.1
4Fe-4S ferredoxin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018258786.1
COORDINATES: protein motif:HMM:NF016831.2
COORDINATES: similar to AA sequence:RefSeq:WP_004594840.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594835.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004594834.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433239.1
COORDINATES: similar to AA sequence:RefSeq:WP_004596923.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863526.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667225.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514881.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807455.1
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018258775.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258774.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258773.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258772.1
COORDINATES: similar to AA sequence:RefSeq:WP_008308679.1
COORDINATES: similar to AA sequence:RefSeq:WP_018257600.1
COORDINATES: similar to AA sequence:RefSeq:WP_018257598.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807462.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807463.1
COORDINATES: similar to AA sequence:RefSeq:WP_018257595.1
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_018257594.1
COORDINATES: similar to AA sequence:RefSeq:WP_018257593.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015762629.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018257592.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807468.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061502.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043292.1
COORDINATES: similar to AA sequence:RefSeq:WP_018257590.1
COORDINATES: similar to AA sequence:RefSeq:WP_018257588.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807474.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524952.1
COORDINATES: similar to AA sequence:RefSeq:WP_018257585.1
COORDINATES: similar to AA sequence:RefSeq:WP_018257584.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650572.1
retropepsin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006182433.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018257582.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807481.1
COORDINATES: similar to AA sequence:RefSeq:WP_018257580.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018257579.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807485.1
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008452615.1
metal ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013446591.1
COORDINATES: similar to AA sequence:RefSeq:WP_004215105.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_007188052.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015233736.1,RefSeq:WP_076611936.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004043318.1
COORDINATES: protein motif:HMM:NF039815.1
COORDINATES: similar to AA sequence:RefSeq:WP_015408669.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807493.1
COORDINATES: similar to AA sequence:RefSeq:WP_004598692.1
COORDINATES: similar to AA sequence:RefSeq:WP_018256090.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018256093.1
IucA/IucC family siderophore biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_012807497.1
diaminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_012807498.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018256096.1
GO:0019290 - siderophore biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012807500.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807501.1
lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018256099.1
COORDINATES: similar to AA sequence:RefSeq:WP_018256100.1
COORDINATES: similar to AA sequence:RefSeq:WP_018256101.1
COORDINATES: similar to AA sequence:RefSeq:WP_015764167.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807507.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807508.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187387.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807510.1
arsenite efflux transporter metallochaperone ArsD
COORDINATES: similar to AA sequence:RefSeq:WP_007993265.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_004062151.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017343634.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_012807515.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807516.1
GO:0140110 - transcription regulator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015408557.1
COORDINATES: similar to AA sequence:RefSeq:WP_006429265.1
COORDINATES: similar to AA sequence:RefSeq:WP_018257368.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807523.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807521.1
COORDINATES: similar to AA sequence:RefSeq:WP_008605801.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807528.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807529.1
COORDINATES: similar to AA sequence:RefSeq:WP_008527465.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258892.1
COORDINATES: similar to AA sequence:RefSeq:WP_011223938.1
cryptochrome/deoxyribodipyrimidine photo-lyase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012807534.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807535.1
b(o/a)3-type cytochrome-c oxidase subunit 1
COORDINATES: similar to AA sequence:RefSeq:WP_018258896.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187215.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258898.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258899.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018258900.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807541.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967610.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004515833.1
rubrerythrin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018258904.1
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018258905.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048321.1
COORDINATES: similar to AA sequence:RefSeq:WP_006628335.1
COORDINATES: similar to AA sequence:RefSeq:WP_004598683.1
COORDINATES: similar to AA sequence:RefSeq:WP_006628333.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431770.1
COORDINATES: similar to AA sequence:RefSeq:WP_007995259.1
COORDINATES: similar to AA sequence:RefSeq:WP_010902057.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258920.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008578258.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018258922.1
GO:0004349 - glutamate 5-kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018258923.1
GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018258924.1
COORDINATES: similar to AA sequence:RefSeq:WP_015764180.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018258926.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258927.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258930.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258931.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258932.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006187324.1
COORDINATES: similar to AA sequence:RefSeq:WP_012996981.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881908.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107572.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258933.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258934.1
COORDINATES: similar to AA sequence:RefSeq:WP_007274249.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258936.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258937.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258938.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018258939.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258940.1
COORDINATES: similar to AA sequence:RefSeq:WP_015764198.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015764199.1