Thalassomonas actiniarum strain A5K-106 chromosome pTact, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.
Bioassay-Guided Fractionation Leads to the Detection of Cholic Acid Generated by the Rare Thalassomonas sp
Draft Genome Sequences of Marine Isolates of Thalassomonas viridans and Thalassomonas actiniarum
Submitted (28-JUL-2020) IMBM, University of the Western Cape, Robert Sobukwe, Cape Town, Western Cape 7550, South Africa
REFSEQ INFORMATION: The reference sequence is identical to\nCP059736.1.\nBacteria and source DNA available from NCIMB.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8; Canu v. 1.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 87.3x; 117.4x\nSequencing Technology :: ONT; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/17/2023 16:29:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,403\nCDSs (total) :: 6,253\nGenes (coding) :: 6,228\nCDSs (with protein) :: 6,228\nGenes (RNA) :: 150\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 118\nncRNAs :: 4\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 6 of 25\nPseudo Genes (incomplete) :: 18 of 25\nPseudo Genes (internal stop) :: 9 of 25\nPseudo Genes (multiple problems) :: 6 of 25\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
amino acid adenylation domain-containing protein
COORDINATES: protein motif:HMM:NF024116.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017218250.1
COORDINATES: similar to AA sequence:RefSeq:WP_017218247.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017218248.1
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF016268.2
COORDINATES: similar to AA sequence:RefSeq:WP_018694164.1
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: similar to AA sequence:RefSeq:WP_017137348.1
COORDINATES: similar to AA sequence:RefSeq:WP_006994737.1
COORDINATES: similar to AA sequence:RefSeq:WP_006994736.1
COORDINATES: similar to AA sequence:RefSeq:WP_006994735.1
COORDINATES: similar to AA sequence:RefSeq:WP_017043130.1
COORDINATES: similar to AA sequence:RefSeq:WP_006994734.1
COORDINATES: similar to AA sequence:RefSeq:WP_008304424.1
COORDINATES: similar to AA sequence:RefSeq:WP_008304423.1
COORDINATES: protein motif:HMM:NF020421.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0016070 - RNA metabolic process [Evidence IEA]
SymE family type I addiction module toxin
COORDINATES: protein motif:HMM:NF013890.2
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_011573193.1
COORDINATES: similar to AA sequence:RefSeq:WP_010363200.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015817572.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
30S ribosomal protein S6--L-glutamate ligase
COORDINATES: similar to AA sequence:RefSeq:WP_010363196.1
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010558184.1
COORDINATES: protein motif:HMM:NF017319.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011770226.1
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF017913.2
phosphate-starvation-inducible PsiE family protein
COORDINATES: protein motif:HMM:NF036554.2
COORDINATES: protein motif:HMM:NF016260.2
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
translocation/assembly module TamB domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013465311.1
GO:0008792 - arginine decarboxylase activity [Evidence IEA]
GO:0006527 - arginine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011769265.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010558813.1
COORDINATES: protein motif:HMM:NF016134.2
COORDINATES: similar to AA sequence:RefSeq:WP_010368043.1
COORDINATES: similar to AA sequence:RefSeq:WP_019440124.1
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:NF013003.2
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_010364780.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019440777.1
COORDINATES: similar to AA sequence:RefSeq:WP_011041833.1
COORDINATES: protein motif:HMM:NF017719.2
COORDINATES: protein motif:HMM:NF008284.0
COORDINATES: similar to AA sequence:RefSeq:WP_017445454.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024039.2
AraC family transcriptional regulator ligand-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012245.2
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_019028097.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:NF024803.2
COORDINATES: protein motif:HMM:NF012517.2
LLM class flavin-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: protein motif:HMM:NF022435.2
COORDINATES: protein motif:HMM:NF012371.2
COORDINATES: protein motif:HMM:NF015131.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017446309.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011637966.1
COORDINATES: protein motif:HMM:NF012382.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF012698.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012907.2
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013885.2
COORDINATES: similar to AA sequence:RefSeq:WP_019028163.1
COORDINATES: protein motif:HMM:NF024989.2
COORDINATES: similar to AA sequence:RefSeq:WP_010607267.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636908.1
FKBP-type peptidyl-prolyl cis-trans isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_011042255.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011495063.1
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: protein motif:HMM:NF013382.2
COORDINATES: similar to AA sequence:RefSeq:WP_009669589.1
COORDINATES: protein motif:HMM:NF025156.2
COORDINATES: protein motif:HMM:NF037677.2
COORDINATES: protein motif:HMM:NF022072.2
COORDINATES: protein motif:HMM:NF024635.2
COORDINATES: similar to AA sequence:RefSeq:WP_012141141.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010556391.1
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_010558936.1
COORDINATES: similar to AA sequence:RefSeq:WP_019439663.1
COORDINATES: similar to AA sequence:RefSeq:WP_010605813.1
GO:0050194 - phosphonoacetaldehyde hydrolase activity [Evidence IEA]
GO:0019700 - organic phosphonate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007617077.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016040.2
GO:0050385 - ureidoglycolate lyase activity [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014427.2
COORDINATES: protein motif:HMM:NF020700.2
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: nucleotide motif:Rfam:14.4:RF01051
cyclic di-GMP riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF025056.2
toll/interleukin-1 receptor domain-containing protein
COORDINATES: protein motif:HMM:NF016296.2
LytTR family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012275891.1
COORDINATES: similar to AA sequence:RefSeq:WP_011044374.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017219136.1
COORDINATES: protein motif:HMM:NF024260.2
COORDINATES: similar to AA sequence:RefSeq:WP_011041663.1
COORDINATES: similar to AA sequence:RefSeq:WP_014109562.1
COORDINATES: similar to AA sequence:RefSeq:WP_006013039.1
COORDINATES: protein motif:HMM:NF021364.2
putative DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011041658.1
COORDINATES: similar to AA sequence:RefSeq:WP_005493481.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019028967.1
COORDINATES: similar to AA sequence:RefSeq:WP_012518052.1
COORDINATES: similar to AA sequence:RefSeq:WP_012518051.1
COORDINATES: protein motif:HMM:NF013862.2
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: protein motif:HMM:TIGR01490.1
COORDINATES: similar to AA sequence:RefSeq:WP_013053509.1
COORDINATES: similar to AA sequence:RefSeq:WP_010558463.1
COORDINATES: protein motif:HMM:NF038216.1
COORDINATES: protein motif:HMM:NF020252.2
COORDINATES: protein motif:HMM:NF019135.2
two-component regulator propeller domain-containing protein
COORDINATES: protein motif:HMM:TIGR03818.1
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: similar to AA sequence:RefSeq:WP_005495318.1
zinc ribbon domain-containing protein YjdM
COORDINATES: similar to AA sequence:RefSeq:WP_016955772.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010367596.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF015531.2
COORDINATES: similar to AA sequence:RefSeq:WP_006378994.1
COORDINATES: protein motif:HMM:NF014573.2
COORDINATES: protein motif:HMM:NF015862.2
COORDINATES: similar to AA sequence:RefSeq:WP_017219607.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019614237.1
COORDINATES: similar to AA sequence:RefSeq:WP_008165617.1
COORDINATES: similar to AA sequence:RefSeq:WP_009669847.1
COORDINATES: similar to AA sequence:RefSeq:WP_006954010.1
COORDINATES: protein motif:HMM:NF012901.2
COORDINATES: similar to AA sequence:RefSeq:WP_008489600.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: protein motif:HMM:NF012656.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01686.1
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: protein motif:HMM:NF003417.0
COORDINATES: protein motif:HMM:NF013166.2
COORDINATES: protein motif:HMM:NF013714.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF016983.2
COORDINATES: protein motif:HMM:TIGR01194.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:1904680 - peptide transmembrane transporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: protein motif:HMM:NF013275.2
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010604437.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008983417.1
COORDINATES: protein motif:HMM:NF039776.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF017393.2
COORDINATES: protein motif:HMM:NF014869.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013777.2
COORDINATES: similar to AA sequence:RefSeq:WP_010386421.1
COORDINATES: similar to AA sequence:RefSeq:WP_010386423.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010386425.1
COORDINATES: protein motif:HMM:NF012311.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014696.2
COORDINATES: protein motif:HMM:NF016906.2
COORDINATES: similar to AA sequence:RefSeq:WP_019614431.1
COORDINATES: similar to AA sequence:RefSeq:WP_011716930.1
GO:0016429 - tRNA (adenine-N1-)-methyltransferase activity [Evidence IEA]
tRNA (adenine(22)-N(1))-methyltransferase TrmK
COORDINATES: protein motif:HMM:NF013226.2
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: protein motif:HMM:NF012422.2
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF024972.2
zinc-dependent metalloprotease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019439968.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018319.2
COORDINATES: protein motif:HMM:TIGR01843.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013052645.1
COORDINATES: similar to AA sequence:RefSeq:WP_009837050.1
COORDINATES: protein motif:HMM:NF014051.2
polysaccharide biosynthesis C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017220416.1
COORDINATES: similar to AA sequence:RefSeq:WP_008845993.1
COORDINATES: protein motif:HMM:NF016115.2
COORDINATES: similar to AA sequence:RefSeq:WP_012517136.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009840555.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: protein motif:HMM:NF019544.2
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
CesT family type III secretion system chaperone
COORDINATES: protein motif:HMM:NF015347.2
BspA family leucine-rich repeat surface protein
COORDINATES: similar to AA sequence:RefSeq:WP_016708221.1
MerR family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008109712.1
COORDINATES: similar to AA sequence:RefSeq:WP_003089113.1
GDCCVxC domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_006033557.1
COORDINATES: similar to AA sequence:RefSeq:WP_010384742.1
COORDINATES: similar to AA sequence:RefSeq:WP_011496239.1
COORDINATES: similar to AA sequence:RefSeq:WP_011497346.1
COORDINATES: similar to AA sequence:RefSeq:WP_011497347.1
SUMF1/EgtB/PvdO family nonheme iron enzyme
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011864622.1
COORDINATES: protein motif:HMM:NF039716.1
COORDINATES: protein motif:HMM:TIGR01730.1
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: protein motif:HMM:NF019960.2
COORDINATES: similar to AA sequence:RefSeq:WP_012520026.1
COORDINATES: protein motif:HMM:NF024917.2
COORDINATES: similar to AA sequence:RefSeq:WP_012325255.1
COORDINATES: protein motif:HMM:TIGR02999.1
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_011770104.1
COORDINATES: similar to AA sequence:RefSeq:WP_011043761.1
COORDINATES: similar to AA sequence:RefSeq:WP_011043760.1
COORDINATES: similar to AA sequence:RefSeq:WP_000004109.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
redox-sensitive transcriptional activator SoxR
COORDINATES: similar to AA sequence:RefSeq:WP_006032171.1
COORDINATES: similar to AA sequence:RefSeq:WP_011043262.1
COORDINATES: similar to AA sequence:RefSeq:WP_006032125.1
COORDINATES: protein motif:HMM:NF013487.2
COORDINATES: protein motif:HMM:NF013460.2
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: similar to AA sequence:RefSeq:WP_016401067.1
glutathione S-transferase family protein
COORDINATES: protein motif:HMM:NF013413.2
GO:0070573 - metallodipeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012859.2
COORDINATES: similar to AA sequence:RefSeq:WP_010363309.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019615560.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635782.1
transglutaminase-like cysteine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_007635770.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017223675.1
COORDINATES: similar to AA sequence:RefSeq:WP_019615565.1
COORDINATES: protein motif:HMM:NF037016.2
COORDINATES: protein motif:HMM:NF019225.2
PEP-CTERM proteins occur, often in large numbers, in the proteomes of bacteria that also encode an exosortase, a predicted intramembrane cysteine proteinase. The presence of a PEP-CTERM domain at a protein's C-terminus predicts cleavage within the sorting domain, followed by covalent anchoring to some some component of the (usually Gram-negative) cell surface. Many PEP-CTERM proteins exhibit an unusual sequence composition that includes large numbers of potential glycosylation sites. Expression of one such protein has been shown restore the ability of a bacterium to form floc, a type of biofilm; Derived by automated computational analysis using gene prediction method: Protein Homology.
PEP-CTERM sorting domain-containing protein
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_007617075.1
COORDINATES: protein motif:HMM:NF033208.1
choice-of-anchor E domain-containing protein
COORDINATES: protein motif:HMM:TIGR02595.1
COORDINATES: protein motif:HMM:NF021778.2
beta-propeller fold lactonase family protein
COORDINATES: protein motif:HMM:NF005455.0
GO:0019346 - transsulfuration [Evidence IEA]
cystathionine gamma-synthase family protein
COORDINATES: protein motif:HMM:NF014647.2
BMP family ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR00254.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_010604302.1
COORDINATES: similar to AA sequence:RefSeq:WP_011043514.1
nitrilase-related carbon-nitrogen hydrolase
COORDINATES: protein motif:HMM:NF014012.2
COORDINATES: similar to AA sequence:RefSeq:WP_012278423.1
GO:0015075 - monoatomic ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter complex subunit F
COORDINATES: similar to AA sequence:RefSeq:WP_007618382.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_007618390.1
COORDINATES: similar to AA sequence:RefSeq:WP_013345038.1
COORDINATES: similar to AA sequence:RefSeq:WP_012156498.1
monovalent cation/H+ antiporter subunit D family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012144001.1
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012278430.1
COORDINATES: protein motif:HMM:NF024907.2
COORDINATES: protein motif:HMM:TIGR02937.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: protein motif:HMM:NF014713.2
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007103425.1
2-hydroxychromene-2-carboxylate isomerase
COORDINATES: protein motif:HMM:NF018471.2
COORDINATES: protein motif:HMM:NF016351.2
COORDINATES: protein motif:HMM:NF001097.0
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019570.2
COORDINATES: protein motif:HMM:NF005536.0
GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006794402.1
COORDINATES: similar to AA sequence:RefSeq:WP_011495546.1
COORDINATES: similar to AA sequence:RefSeq:WP_004588278.1
COORDINATES: similar to AA sequence:RefSeq:WP_005501363.1
COORDINATES: similar to AA sequence:RefSeq:WP_010362113.1
COORDINATES: similar to AA sequence:RefSeq:WP_016535194.1
COORDINATES: protein motif:HMM:NF013235.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: protein motif:HMM:NF015076.2
COORDINATES: similar to AA sequence:RefSeq:WP_008110267.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: similar to AA sequence:RefSeq:WP_004587101.1
COORDINATES: similar to AA sequence:RefSeq:WP_017221856.1
COORDINATES: similar to AA sequence:RefSeq:WP_011044082.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004804477.1
COORDINATES: protein motif:HMM:TIGR04335.1
COORDINATES: similar to AA sequence:RefSeq:WP_019615162.1
COORDINATES: similar to AA sequence:RefSeq:WP_011864737.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
AmmeMemoRadiSam system radical SAM enzyme
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:NF014673.2
COORDINATES: similar to AA sequence:RefSeq:WP_019027465.1
GO:0019104 - DNA N-glycosylase activity [Evidence IEA]
GO:0036297 - interstrand cross-link repair [Evidence IEA]
crosslink repair DNA glycosylase YcaQ family protein
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015431171.1
COORDINATES: protein motif:HMM:NF015338.2
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006012852.1
tetratricopeptide repeat-containing sulfotransferase family protein
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: protein motif:HMM:NF023175.2
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_010371676.1
COORDINATES: similar to AA sequence:RefSeq:WP_019026986.1
GO:0009429 - bacterial-type flagellum basal body, proximal rod [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017217812.1
COORDINATES: similar to AA sequence:RefSeq:WP_017218574.1
COORDINATES: similar to AA sequence:RefSeq:WP_010377619.1
COORDINATES: protein motif:HMM:NF013927.2
COORDINATES: similar to AA sequence:RefSeq:WP_010365989.1
PLP-dependent aminotransferase family protein
COORDINATES: protein motif:HMM:NF014653.2
COORDINATES: protein motif:HMM:NF004282.0
COORDINATES: similar to AA sequence:RefSeq:WP_019029103.1
COORDINATES: similar to AA sequence:RefSeq:WP_010387369.1
COORDINATES: protein motif:HMM:NF013811.2
COORDINATES: similar to AA sequence:RefSeq:WP_010368687.1
GO:0047304 - 2-aminoethylphosphonate-pyruvate transaminase activity [Evidence IEA]
2-aminoethylphosphonate--pyruvate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_011042229.1
COORDINATES: similar to AA sequence:RefSeq:WP_016403201.1
COORDINATES: similar to AA sequence:RefSeq:WP_013465156.1
COORDINATES: protein motif:HMM:NF025114.2
COORDINATES: similar to AA sequence:RefSeq:WP_011626489.1
COORDINATES: similar to AA sequence:RefSeq:WP_007646608.1
COORDINATES: similar to AA sequence:RefSeq:WP_017221524.1
glutathione S-transferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008845798.1
COORDINATES: similar to AA sequence:RefSeq:WP_006012315.1
COORDINATES: similar to AA sequence:RefSeq:WP_019442712.1
COORDINATES: similar to AA sequence:RefSeq:WP_010377887.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_014977696.1
COORDINATES: similar to AA sequence:RefSeq:WP_011328530.1
COORDINATES: similar to AA sequence:RefSeq:WP_013753608.1
COORDINATES: similar to AA sequence:RefSeq:WP_011235297.1
COORDINATES: protein motif:HMM:NF013672.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF024758.2
pre-peptidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018984654.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013578.2
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: protein motif:HMM:NF036537.2
COORDINATES: protein motif:HMM:NF038122.1
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: protein motif:HMM:NF013625.2
peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011042121.1
COORDINATES: similar to AA sequence:RefSeq:WP_019028645.1
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: similar to AA sequence:RefSeq:WP_011045047.1
COORDINATES: protein motif:HMM:NF002133.0
GO:0004359 - glutaminase activity [Evidence IEA]
GO:0006541 - glutamine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF028235.2
COORDINATES: similar to AA sequence:RefSeq:WP_019441227.1
NADH:flavin oxidoreductase/NADH oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006033141.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635157.1
COORDINATES: similar to AA sequence:RefSeq:WP_011043871.1
COORDINATES: protein motif:HMM:NF013866.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: protein motif:HMM:NF012546.2
COORDINATES: protein motif:HMM:NF020976.2
COORDINATES: similar to AA sequence:RefSeq:WP_017222829.1
COORDINATES: protein motif:HMM:NF013434.2
glycerol-3-phosphate dehydrogenase/oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_013345965.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637494.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF012699.2
COORDINATES: similar to AA sequence:RefSeq:WP_018692205.1
type III secretion system export apparatus subunit SctV
COORDINATES: protein motif:HMM:NF013868.2
COORDINATES: protein motif:HMM:NF013052.2
COORDINATES: protein motif:HMM:TIGR02568.1
GO:0009986 - cell surface [Evidence IEA]
GO:0050709 - negative regulation of protein secretion [Evidence IEA]; GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
type III secretion system gatekeeper subunit SctW
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: protein motif:HMM:NF018970.2
YscO family type III secretion system apparatus protein
COORDINATES: protein motif:HMM:NF021023.2
COORDINATES: similar to AA sequence:RefSeq:WP_011045049.1
COORDINATES: similar to AA sequence:RefSeq:WP_019028177.1
COORDINATES: protein motif:HMM:NF013395.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014522.2
COORDINATES: protein motif:HMM:NF033632.1
COORDINATES: similar to AA sequence:RefSeq:WP_006030382.1
COORDINATES: similar to AA sequence:RefSeq:WP_011043851.1
COORDINATES: protein motif:HMM:NF018303.2
SctK family type III secretion system sorting platform protein
COORDINATES: protein motif:HMM:TIGR02544.1
type III secretion inner membrane ring lipoprotein SctJ
COORDINATES: protein motif:HMM:NF028311.2
EscI/YscI/HrpB family type III secretion system inner rod protein
COORDINATES: protein motif:HMM:NF020948.2
GO:0015031 - protein transport [Evidence IEA]
EscF/YscF/HrpA family type III secretion system needle major subunit
COORDINATES: protein motif:HMM:NF021032.2
COORDINATES: protein motif:HMM:TIGR02551.1
GO:0030257 - type III protein secretion system complex [Evidence IEA]
type III secretion system cytoplasmic ring protein SctQ
COORDINATES: similar to AA sequence:RefSeq:WP_013051506.1
type III secretion system export apparatus subunit SctR
COORDINATES: similar to AA sequence:RefSeq:WP_018692216.1
type III secretion system export apparatus subunit SctS
COORDINATES: protein motif:HMM:TIGR01401.1
type III secretion system export apparatus subunit SctT
COORDINATES: similar to AA sequence:RefSeq:WP_018692218.1
type III secretion system export apparatus subunit SctU
COORDINATES: similar to AA sequence:RefSeq:WP_019026560.1
COORDINATES: similar to AA sequence:RefSeq:WP_018692211.1
COORDINATES: protein motif:HMM:NF015858.2
COORDINATES: protein motif:HMM:TIGR02516.1
type III secretion system outer membrane ring subunit SctC
COORDINATES: protein motif:HMM:NF028007.2
COORDINATES: protein motif:HMM:NF020557.2
EscE/YscE/SsaE family type III secretion system needle protein co-chaperone
COORDINATES: protein motif:HMM:NF018358.2
COORDINATES: similar to AA sequence:RefSeq:WP_006010716.1
GO:0050568 - protein-glutamine glutaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_011041619.1
COORDINATES: similar to AA sequence:RefSeq:WP_011329060.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011769932.1
COORDINATES: similar to AA sequence:RefSeq:WP_011496828.1
COORDINATES: similar to AA sequence:RefSeq:WP_010557826.1
COORDINATES: similar to AA sequence:RefSeq:WP_007988877.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012142270.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017220507.1
GO:0004000 - adenosine deaminase activity [Evidence IEA]
GO:0043101 - purine-containing compound salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007625943.1
nitric oxide reductase transcriptional regulator NorR
COORDINATES: similar to AA sequence:RefSeq:WP_011639114.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0008941 - nitric oxide dioxygenase activity [Evidence IEA]; GO:0019825 - oxygen binding [Evidence IEA]
GO:0051409 - response to nitrosative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF016843.2
COORDINATES: similar to AA sequence:RefSeq:WP_013051707.1
COORDINATES: similar to AA sequence:RefSeq:WP_005500088.1
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF020604.2
COORDINATES: protein motif:HMM:NF014021.2
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF018525.2
COORDINATES: protein motif:HMM:NF012427.2
COORDINATES: protein motif:HMM:NF023222.2
4-hydroxyphenylacetate 3-hydroxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016402329.1
COORDINATES: protein motif:HMM:NF003818.1
COORDINATES: protein motif:HMM:NF017532.2
phytanoyl-CoA dioxygenase family protein
COORDINATES: protein motif:HMM:NF040006.1
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007621466.1
COORDINATES: similar to AA sequence:RefSeq:WP_014976489.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: protein motif:HMM:TIGR03897.1
type 2 lanthipeptide synthetase LanM family protein
COORDINATES: protein motif:HMM:TIGR03898.1
mersacidin/lichenicidin family type 2 lantibiotic
COORDINATES: similar to AA sequence:RefSeq:WP_011044687.1
COORDINATES: similar to AA sequence:RefSeq:WP_012326687.1
COORDINATES: protein motif:HMM:NF021465.2
COORDINATES: protein motif:HMM:NF018712.2
COORDINATES: protein motif:HMM:NF017773.2
COORDINATES: similar to AA sequence:RefSeq:WP_016402719.1
ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_013464194.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018894.2
COORDINATES: similar to AA sequence:RefSeq:WP_007624685.1
COORDINATES: similar to AA sequence:RefSeq:WP_007638803.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdenum ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007638805.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]
molybdate ABC transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007638807.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0030973 - molybdate ion binding [Evidence IEA]
molybdate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017218803.1
COORDINATES: similar to AA sequence:RefSeq:WP_017216924.1
COORDINATES: similar to AA sequence:RefSeq:WP_013343944.1
COORDINATES: protein motif:HMM:NF012337.2
beta-ketoacyl synthase N-terminal-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017223225.1
COORDINATES: similar to AA sequence:RefSeq:WP_017223226.1
COORDINATES: protein motif:HMM:TIGR01846.1
COORDINATES: protein motif:HMM:NF015499.2
COORDINATES: protein motif:HMM:NF028441.2
outer membrane lipoprotein-sorting protein
COORDINATES: protein motif:HMM:NF012500.2
COORDINATES: protein motif:HMM:NF012863.2
GDSL-type esterase/lipase family protein
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF018305.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006085330.1
COORDINATES: protein motif:HMM:NF013592.2
GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015000.2
COORDINATES: similar to AA sequence:RefSeq:WP_011769977.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635856.1
COORDINATES: similar to AA sequence:RefSeq:WP_011495352.1
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: protein motif:HMM:NF017411.2
COORDINATES: protein motif:HMM:NF023128.2
COORDINATES: protein motif:HMM:NF028434.2
COORDINATES: similar to AA sequence:RefSeq:WP_012141218.1
COORDINATES: protein motif:HMM:NF017081.2
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF012420.2
COORDINATES: similar to AA sequence:RefSeq:WP_017217532.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF012888.2
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008138118.1
GO:0031177 - phosphopantetheine binding [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
non-ribosomal peptide synthase/polyketide synthase
COORDINATES: protein motif:HMM:NF014698.2