Neisseria gonorrhoeae strain TUM19854 plasmid pMTY19854, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.
Molecular characterization of Neisseria gonorrhoeae isolates collected through a national surveillance programme in Japan, 2013: evidence of the emergence of a ceftriaxone-resistant strain from a ceftriaxone-susceptible lineage
Submitted (01-MAY-2020) Contact:Mami Hanao Toho University; 5-21-16 Omori-nish, Ota-ku, Tokyo 143-8540, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP023070.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8-beta\nGenome Coverage :: 94x\nSequencing Technology :: ONT MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 03:59:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,299\nCDSs (total) :: 2,228\nGenes (coding) :: 2,002\nCDSs (with protein) :: 2,002\nGenes (RNA) :: 71\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 4\nPseudo Genes (total) :: 226\nCDSs (without protein) :: 226\nPseudo Genes (ambiguous residues) :: 0 of 226\nPseudo Genes (frameshifted) :: 115 of 226\nPseudo Genes (incomplete) :: 132 of 226\nPseudo Genes (internal stop) :: 38 of 226\nPseudo Genes (multiple problems) :: 57 of 226\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_003690219.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003690220.1
COORDINATES: similar to AA sequence:RefSeq:WP_003690221.1
COORDINATES: similar to AA sequence:RefSeq:WP_003690223.1
COORDINATES: similar to AA sequence:RefSeq:WP_013448818.1
COORDINATES: similar to AA sequence:RefSeq:WP_003690227.1
COORDINATES: similar to AA sequence:RefSeq:WP_003690229.1
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein