Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium.
Whole Genome Sequence of 1,4-Dioxane Degrading Bacterium Mycobacterium dioxanotrophicus PH-06
Submitted (11-APR-2017) Civil and Environmental Engineering, Rice University, Department of Civil and Environmental Engineering, Rice University, 6100 Main Street, Ms-519, Houston, TX 77005, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP020810.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS_HGAP Assembly of SMRT Analysis v. 2.3.0\nGenome Coverage :: 100x\nSequencing Technology :: Illumina Hiseq; PacBio RS II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 05:07:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,873\nCDSs (total) :: 7,778\nGenes (coding) :: 7,523\nCDSs (with protein) :: 7,523\nGenes (RNA) :: 95\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 82\nncRNAs :: 4\nPseudo Genes (total) :: 255\nCDSs (without protein) :: 255\nPseudo Genes (ambiguous residues) :: 0 of 255\nPseudo Genes (frameshifted) :: 135 of 255\nPseudo Genes (incomplete) :: 145 of 255\nPseudo Genes (internal stop) :: 11 of 255\nPseudo Genes (multiple problems) :: 32 of 255\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Mycobacterium dioxanotrophicus
COORDINATES: similar to AA sequence:RefSeq:WP_013676848.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
heterodisulfide reductase-related iron-sulfur binding cluster
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019855288.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
FAD-linked oxidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013678756.1
COORDINATES: similar to AA sequence:RefSeq:WP_013678755.1
COORDINATES: protein motif:HMM:NF013715.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013807396.1
COORDINATES: similar to AA sequence:RefSeq:WP_003887303.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006333841.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_003932503.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_086558251.1
COORDINATES: similar to AA sequence:RefSeq:WP_006247303.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006247305.1
COORDINATES: protein motif:HMM:NF033516.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018598745.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148617.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148616.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005148615.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246282.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF025407.2
COORDINATES: similar to AA sequence:RefSeq:WP_006246286.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246287.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148605.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148604.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005148596.1
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_016888813.1
COORDINATES: similar to AA sequence:RefSeq:WP_005115719.1
COORDINATES: similar to AA sequence:RefSeq:WP_007237519.1
COORDINATES: similar to AA sequence:RefSeq:WP_003891611.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003887006.1
COORDINATES: similar to AA sequence:RefSeq:WP_003887007.1
COORDINATES: similar to AA sequence:RefSeq:WP_003887008.1
COORDINATES: similar to AA sequence:RefSeq:WP_003891608.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246293.1
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005148592.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148591.1
COORDINATES: similar to AA sequence:RefSeq:WP_015969592.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148589.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246298.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246299.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148586.1
COORDINATES: similar to AA sequence:RefSeq:WP_017540799.1
GO:0008168 - methyltransferase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015972909.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246302.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148583.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148582.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148581.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246308.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246309.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246310.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246311.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148573.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148570.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148569.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148568.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246314.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246316.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148565.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006246318.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148563.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005148562.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148561.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
type VII secretion-associated serine protease mycosin
COORDINATES: similar to AA sequence:RefSeq:WP_005148560.1
GO:0003674 - molecular_function [Evidence IEA]
type VII secretion integral membrane protein EccD
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_020661063.1
COORDINATES: similar to AA sequence:RefSeq:WP_020661064.1
COORDINATES: protein motif:HMM:NF024776.2
COORDINATES: similar to AA sequence:RefSeq:WP_005148558.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148557.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148556.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148555.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148554.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246326.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148552.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148550.1
COORDINATES: similar to AA sequence:RefSeq:WP_011562874.1
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006246233.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148687.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246237.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148680.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148678.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148677.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246241.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246242.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246244.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246245.1
COORDINATES: similar to AA sequence:RefSeq:WP_005148672.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246247.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246249.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246250.1
COORDINATES: similar to AA sequence:RefSeq:WP_005202509.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015293992.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:NP_217381.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_076611569.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015655382.1
COORDINATES: similar to AA sequence:RefSeq:WP_019047406.1
COORDINATES: similar to AA sequence:RefSeq:WP_018893472.1
COORDINATES: similar to AA sequence:RefSeq:WP_003929843.1
COORDINATES: similar to AA sequence:RefSeq:WP_011778330.1
COORDINATES: similar to AA sequence:RefSeq:WP_013470157.1
COORDINATES: similar to AA sequence:RefSeq:WP_006144243.1
GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]
NADP-dependent succinic semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_013678754.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_013678753.1
COORDINATES: similar to AA sequence:RefSeq:WP_020546021.1
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_009475268.1
COORDINATES: similar to AA sequence:RefSeq:WP_015305504.1
GO:0008679 - 2-hydroxy-3-oxopropionate reductase activity [Evidence IEA]
GO:0019580 - galactarate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011595882.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011595887.1
COORDINATES: similar to AA sequence:RefSeq:WP_017620746.1