Mugil cephalus isolate CIBA_MC_2020 chromosome 24, CIBA_Mcephalus_1.1, whole genome shotgun sequence.
type: Entry
definition: Mugil cephalus isolate CIBA_MC_2020 chromosome 24, CIBA_Mcephalus_1.1, whole genome shotgun sequence.
sequence version: NC_061793.1
sequence date: 2022-04-07
sequence: sequence
division: CON
label: NC_061793.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA821704
dblink: SAMN16703275
keyword: WGS
keyword: RefSeq
source: Mugil cephalus (flathead mullet)
organism: Mugil cephalus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Mugilomorphae; Mugilidae; Mugil.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM039578.1.\nAssembly name: CIBA_Mcephalus_1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the ICAR - Central Institute of\nBrackishwater Aquaculture on 2022/03/04. The original whole-genome\nshotgun project has the accession JAJAQD000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: ICAR - Central Institute of Brackishwater\n Aquaculture\nAssembly Date :: 2021\nAssembly Method :: WTDBG v. 2.5\nAssembly Name :: CIBA_Mcephalus_1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 406.0x\nSequencing Technology :: PacBio Sequel; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Mugil cephalus Annotation Release\n 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 601000
topology: linear
so has quality: SO_0000987
location: 1..601000
location: region:1-601000:1
RO_0002162: 48193

NC_061793
type: RefSeq
SIO_000068: refseq

PRJNA821704
type: BioProject
SIO_000068: bioproject

SAMN16703275
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:601000:1
position: 601000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-601000:1:source
so part of: sequence
organism: Mugil cephalus
mol type: genomic DNA
isolate: CIBA_MC_2020
chromosome: 24
tissue type: muscle
dev stage: juvenile
country: India: Chennai
collection date: 2020

48193
type: Taxonomy
SIO_000068: taxonomy

LOC125003413
type: Gene
subclass of: SO_0000704
RO_0002162: 48193
gene: LOC125003413
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(117932..119867)
location: region:117932-119867:-1
so has part: feature:117932-119867:-1:exon
subclass of: SO_0000011

125003413
type: Gene
SIO_000068: ncbigene

position:117932:-1
position: 117932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:119867:-1
position: 119867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117932-119867:-1:exon

LOC125003413
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 48193
nc RNA class: lncRNA
gene: LOC125003413
product: uncharacterized LOC125003413
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_007112207.1
SIO_010081: LOC125003413
subclass of: SO_0000673
so part of: LOC125003413
location: complement(join(117932..117993,118720..118893,119828..119867))
location: region:117932-119867:-1
so has part: feature:119828-119867:-1:exon
so has part: feature:118720-118893:-1:exon
so has part: feature:117932-117993:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:119828-119867:-1:exon

position:119828:-1
position: 119828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:118720-118893:-1:exon

position:118720:-1
position: 118720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:118893:-1
position: 118893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:117932-117993:-1:exon

position:117993:-1
position: 117993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125003414
type: Gene
subclass of: SO_0000704
RO_0002162: 48193
gene: LOC125003414
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(119944..123989)
location: region:119944-123989:-1
so has part: feature:119944-123989:-1:exon
subclass of: SO_0000011

125003414
type: Gene
SIO_000068: ncbigene

position:119944:-1
position: 119944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:123989:-1
position: 123989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119944-123989:-1:exon

LOC125003414
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 48193
nc RNA class: lncRNA
gene: LOC125003414
product: uncharacterized LOC125003414
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_007112208.1
SIO_010081: LOC125003414
subclass of: SO_0000673
so part of: LOC125003414
location: complement(join(119944..120001,120578..120751,123940..123989))
location: region:119944-123989:-1
so has part: feature:123940-123989:-1:exon
so has part: feature:120578-120751:-1:exon
so has part: feature:119944-120001:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:123940-123989:-1:exon

position:123940:-1
position: 123940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:120578-120751:-1:exon

position:120578:-1
position: 120578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:120751:-1
position: 120751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:119944-120001:-1:exon

position:120001:-1
position: 120001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125003406
type: Gene
subclass of: SO_0000704
RO_0002162: 48193
gene: LOC125003406
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(191920..198875)
location: region:191920-198875:-1
so has part: feature:191920-198875:-1:exon
subclass of: SO_0000011

125003406
type: Gene
SIO_000068: ncbigene

position:191920:-1
position: 191920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:198875:-1
position: 198875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191920-198875:-1:exon

LOC125003406
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 48193
nc RNA class: lncRNA
gene: LOC125003406
product: uncharacterized LOC125003406, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_007112199.1
SIO_010081: LOC125003406
subclass of: SO_0000673
so part of: LOC125003406
location: complement(join(191920..191986,196654..196749,196919..197106,197360..197412,198846..198875))
location: region:191920-198875:-1
so has part: feature:198846-198875:-1:exon
so has part: feature:197360-197412:-1:exon
so has part: feature:196919-197106:-1:exon
so has part: feature:196654-196749:-1:exon
so has part: feature:191920-191986:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:198846-198875:-1:exon

position:198846:-1
position: 198846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:197360-197412:-1:exon

position:197360:-1
position: 197360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:197412:-1
position: 197412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:196919-197106:-1:exon

position:196919:-1
position: 196919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:197106:-1
position: 197106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:196654-196749:-1:exon

position:196654:-1
position: 196654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:196749:-1
position: 196749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:191920-191986:-1:exon

position:191986:-1
position: 191986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125003406
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 48193
nc RNA class: lncRNA
gene: LOC125003406
product: uncharacterized LOC125003406, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_007112198.1
SIO_010081: LOC125003406
subclass of: SO_0000673
so part of: LOC125003406
location: complement(join(191920..191986,196654..196749,196919..197106,197360..198866))
location: region:191920-198866:-1
so has part: feature:197360-198866:-1:exon
so has part: feature:196919-197106:-1:exon
so has part: feature:196654-196749:-1:exon
so has part: feature:191920-191986:-1:exon

position:198866:-1
position: 198866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:197360-198866:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:196919-197106:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:196654-196749:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:191920-191986:-1:exon

LOC125003407
type: Gene
subclass of: SO_0000704
RO_0002162: 48193
gene: LOC125003407
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 208857..215768
location: region:208857-215768:1
so has part: feature:208857-215768:1:exon
subclass of: SO_0000011

125003407
type: Gene
SIO_000068: ncbigene

position:208857:1
position: 208857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:215768:1
position: 215768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208857-215768:1:exon

LOC125003407
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 48193
nc RNA class: lncRNA
gene: LOC125003407
product: uncharacterized LOC125003407, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_007112201.1
SIO_010081: LOC125003407
subclass of: SO_0000673
so part of: LOC125003407
location: join(208857..208886,210295..210347,210602..210789,210959..211054,215705..215768)
location: region:208857-215768:1
so has part: feature:208857-208886:1:exon
so has part: feature:210295-210347:1:exon
so has part: feature:210602-210789:1:exon
so has part: feature:210959-211054:1:exon
so has part: feature:215705-215768:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:208857-208886:1:exon

position:208886:1
position: 208886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:210295-210347:1:exon

position:210295:1
position: 210295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210347:1
position: 210347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:210602-210789:1:exon

position:210602:1
position: 210602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210789:1
position: 210789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:210959-211054:1:exon

position:210959:1
position: 210959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211054:1
position: 211054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:215705-215768:1:exon

position:215705:1
position: 215705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125003407
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 48193
nc RNA class: lncRNA
gene: LOC125003407
product: uncharacterized LOC125003407, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_007112200.1
SIO_010081: LOC125003407
subclass of: SO_0000673
so part of: LOC125003407
location: join(210118..210347,210602..210789,210959..211054,215705..215768)
location: region:210118-215768:1
so has part: feature:210118-210347:1:exon
so has part: feature:210602-210789:1:exon
so has part: feature:210959-211054:1:exon
so has part: feature:215705-215768:1:exon

position:210118:1
position: 210118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210118-210347:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:210602-210789:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210959-211054:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:215705-215768:1:exon

LOC125003411
type: Gene
subclass of: SO_0000704
RO_0002162: 48193
gene: LOC125003411
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 317311..318796
location: region:317311-318796:1
so has part: feature:317311-318796:1:exon
subclass of: SO_0000011

125003411
type: Gene
SIO_000068: ncbigene

position:317311:1
position: 317311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318796:1
position: 318796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317311-318796:1:exon

LOC125003411
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 48193
nc RNA class: lncRNA
gene: LOC125003411
product: uncharacterized LOC125003411
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_007112205.1
SIO_010081: LOC125003411
subclass of: SO_0000673
so part of: LOC125003411
location: join(317311..317413,317820..317982,318083..318275,318779..318796)
location: region:317311-318796:1
so has part: feature:317311-317413:1:exon
so has part: feature:317820-317982:1:exon
so has part: feature:318083-318275:1:exon
so has part: feature:318779-318796:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:317311-317413:1:exon

position:317413:1
position: 317413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:317820-317982:1:exon

position:317820:1
position: 317820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:317982:1
position: 317982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:318083-318275:1:exon

position:318083:1
position: 318083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318275:1
position: 318275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:318779-318796:1:exon

position:318779:1
position: 318779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125003412
type: Gene
subclass of: SO_0000704
RO_0002162: 48193
gene: LOC125003412
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 321000..328865
location: region:321000-328865:1
so has part: feature:321000-328865:1:exon
subclass of: SO_0000011

125003412
type: Gene
SIO_000068: ncbigene

position:321000:1
position: 321000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:328865:1
position: 328865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321000-328865:1:exon

LOC125003412
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 48193
nc RNA class: lncRNA
gene: LOC125003412
product: uncharacterized LOC125003412
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_007112206.1
SIO_010081: LOC125003412
subclass of: SO_0000673
so part of: LOC125003412
location: join(321000..321014,324488..324583,328769..328865)
location: region:321000-328865:1
so has part: feature:321000-321014:1:exon
so has part: feature:324488-324583:1:exon
so has part: feature:328769-328865:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:321000-321014:1:exon

position:321014:1
position: 321014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:324488-324583:1:exon

position:324488:1
position: 324488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:324583:1
position: 324583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:328769-328865:1:exon

position:328769:1
position: 328769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125003415
type: Gene
subclass of: SO_0000704
RO_0002162: 48193
gene: LOC125003415
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 331450..336580
location: region:331450-336580:1
so has part: feature:331450-336580:1:exon
subclass of: SO_0000010

125003415
type: Gene
SIO_000068: ncbigene

position:331450:1
position: 331450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:336580:1
position: 336580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:331450-336580:1:exon

LOC125003415
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 48193
gene: LOC125003415
product: uncharacterized LOC125003415
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_047577350.1
SIO_010081: LOC125003415
subclass of: SO_0000673
so part of: LOC125003415
location: join(331450..331933,332096..332149,333092..333226,334779..334916,336504..336580)
location: region:331450-336580:1
so has part: feature:331450-331933:1:exon
so has part: feature:332096-332149:1:exon
so has part: feature:333092-333226:1:exon
so has part: feature:334779-334916:1:exon
so has part: feature:336504-336580:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:331450-331933:1:exon

position:331933:1
position: 331933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:332096-332149:1:exon

position:332096:1
position: 332096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:332149:1
position: 332149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:333092-333226:1:exon

position:333092:1
position: 333092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:333226:1
position: 333226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:334779-334916:1:exon

position:334779:1
position: 334779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:334916:1
position: 334916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:336504-336580:1:exon

position:336504:1
position: 336504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125003415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 48193
gene: LOC125003415
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125003415
translation: MQQALDMLVSKRQECGVPLENIYLFARPSALTCYRGSDCLRHFAKACGAKTPESLTSTKLRKQTGTLSQVLNLSNTELDQLADFLGHDIRVHRQFYRLPEGTLQLAKISKVLLSLEKGRLAEFKGKTLDDINIDPEENVHLDSDTEDVFESGSEERQSTSSHRENKTTEPHGSHNEEAPQEDGMTLPPPCHRKSSKSERERRATSSQIEENNSTRPDANHDKAAPEKANMTCSPPCHRKSSKNERGHYMIFFRAVQPPEKVDPTMDGLVR
SIO_010081: LOC125003415
subclass of: SO_0000673
so part of: LOC125003415
location: join(331525..331933,332096..332149,333092..333226,334779..334916,336504..336580)
location: region:331525-336580:1
so has part: feature:331525-331933:1:exon
so has part: feature:332096-332149:1:exon
so has part: feature:333092-333226:1:exon
so has part: feature:334779-334916:1:exon
so has part: feature:336504-336580:1:exon

XP_047433306.1
type: Protein
SIO_000068: ncbiprotein

position:331525:1
position: 331525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:331525-331933:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:332096-332149:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:333092-333226:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:334779-334916:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:336504-336580:1:exon

LOC125003410
type: Gene
subclass of: SO_0000704
RO_0002162: 48193
gene: LOC125003410
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 339114..343258
location: region:339114-343258:1
so has part: feature:339114-343258:1:exon
subclass of: SO_0000011

125003410
type: Gene
SIO_000068: ncbigene

position:339114:1
position: 339114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:343258:1
position: 343258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:339114-343258:1:exon

LOC125003410
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 48193
nc RNA class: lncRNA
gene: LOC125003410
product: uncharacterized LOC125003410
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_007112204.1
SIO_010081: LOC125003410
subclass of: SO_0000673
so part of: LOC125003410
location: join(339114..339193,339968..340020,340274..340461,342992..343258)
location: region:339114-343258:1
so has part: feature:339114-339193:1:exon
so has part: feature:339968-340020:1:exon
so has part: feature:340274-340461:1:exon
so has part: feature:342992-343258:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:339114-339193:1:exon

position:339193:1
position: 339193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:339968-340020:1:exon

position:339968:1
position: 339968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340020:1
position: 340020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:340274-340461:1:exon

position:340274:1
position: 340274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340461:1
position: 340461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:342992-343258:1:exon

position:342992:1
position: 342992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125003408
type: Gene
subclass of: SO_0000704
RO_0002162: 48193
gene: LOC125003408
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 474318..475806
location: region:474318-475806:1
so has part: feature:474318-475806:1:exon
subclass of: SO_0000011

125003408
type: Gene
SIO_000068: ncbigene

position:474318:1
position: 474318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:475806:1
position: 475806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:474318-475806:1:exon

LOC125003408
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 48193
nc RNA class: lncRNA
gene: LOC125003408
product: uncharacterized LOC125003408
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_007112202.1
SIO_010081: LOC125003408
subclass of: SO_0000673
so part of: LOC125003408
location: join(474318..474420,474829..474991,475092..475284,475789..475806)
location: region:474318-475806:1
so has part: feature:474318-474420:1:exon
so has part: feature:474829-474991:1:exon
so has part: feature:475092-475284:1:exon
so has part: feature:475789-475806:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:474318-474420:1:exon

position:474420:1
position: 474420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:474829-474991:1:exon

position:474829:1
position: 474829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:474991:1
position: 474991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:475092-475284:1:exon

position:475092:1
position: 475092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:475284:1
position: 475284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:475789-475806:1:exon

position:475789:1
position: 475789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125003409
type: Gene
subclass of: SO_0000704
RO_0002162: 48193
gene: LOC125003409
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 478011..485880
location: region:478011-485880:1
so has part: feature:478011-485880:1:exon
subclass of: SO_0000011

125003409
type: Gene
SIO_000068: ncbigene

position:478011:1
position: 478011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:485880:1
position: 485880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:478011-485880:1:exon

LOC125003409
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 48193
nc RNA class: lncRNA
gene: LOC125003409
product: uncharacterized LOC125003409
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_007112203.1
SIO_010081: LOC125003409
subclass of: SO_0000673
so part of: LOC125003409
location: join(478011..478025,481500..481595,485784..485880)
location: region:478011-485880:1
so has part: feature:478011-478025:1:exon
so has part: feature:481500-481595:1:exon
so has part: feature:485784-485880:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:478011-478025:1:exon

position:478025:1
position: 478025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:481500-481595:1:exon

position:481500:1
position: 481500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:481595:1
position: 481595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:485784-485880:1:exon

position:485784:1
position: 485784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125003416
type: Gene
subclass of: SO_0000704
RO_0002162: 48193
gene: LOC125003416
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 488441..493596
location: region:488441-493596:1
so has part: feature:488441-493596:1:exon
subclass of: SO_0000010

125003416
type: Gene
SIO_000068: ncbigene

position:488441:1
position: 488441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:493596:1
position: 493596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:488441-493596:1:exon

LOC125003416
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 48193
gene: LOC125003416
product: uncharacterized LOC125003416
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_047577351.1
SIO_010081: LOC125003416
subclass of: SO_0000673
so part of: LOC125003416
location: join(488441..488952,489115..489168,490110..490244,491794..491931,493520..493596)
location: region:488441-493596:1
so has part: feature:488441-488952:1:exon
so has part: feature:489115-489168:1:exon
so has part: feature:490110-490244:1:exon
so has part: feature:491794-491931:1:exon
so has part: feature:493520-493596:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:488441-488952:1:exon

position:488952:1
position: 488952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:489115-489168:1:exon

position:489115:1
position: 489115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:489168:1
position: 489168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:490110-490244:1:exon

position:490110:1
position: 490110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:490244:1
position: 490244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:491794-491931:1:exon

position:491794:1
position: 491794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:491931:1
position: 491931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:493520-493596:1:exon

position:493520:1
position: 493520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125003416
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 48193
gene: LOC125003416
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125003416
translation: MQQALDMLVSKRQECGVPLENIYLFARPSALTCYRGSDCLRHFAKACGAKTPESLTSTKLRKQTGTLSQVLNLSNTELDQLADFLGHDIRVHRQFYRLPEGTLQLAKISKVLLSLEKGRLAEFKGKTLDDINIDPEENVHLDSDTEDVFESGSEERQSTSSHRENKTTEPHGSHNEEAPQEDGMTLPPPCHRKSSKSERERRATSSQIEENNSTRPDANHDKAAPEKANMTCSPPCHRKSSKNERGHYMIFFRAVQPPEKVDPTMDGLVR
SIO_010081: LOC125003416
subclass of: SO_0000673
so part of: LOC125003416
location: join(488544..488952,489115..489168,490110..490244,491794..491931,493520..493596)
location: region:488544-493596:1
so has part: feature:488544-488952:1:exon
so has part: feature:489115-489168:1:exon
so has part: feature:490110-490244:1:exon
so has part: feature:491794-491931:1:exon
so has part: feature:493520-493596:1:exon

XP_047433307.1
type: Protein
SIO_000068: ncbiprotein

position:488544:1
position: 488544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:488544-488952:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:489115-489168:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:490110-490244:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:491794-491931:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:493520-493596:1:exon