Acetobacter ascendens strain SRCM101447 plasmid pAP1447-2.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.
Genome sequence of Acetobacter pasteurianus subsp. ascendens strain SRCM101447
Submitted (23-MAY-2017) Bioinformatics Research Institute, Microbial Institiue for Fermentation Industry, 61-27 Minsokmaeul-gil, Sunchan-eup, Sunchang-gun 56048, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP021526.1.\nBacteria and source DNA available from Microbial Institute for\nFermentation Industry.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis v. 2.3.0\nExpected Final Version :: yes\nGenome Coverage :: 336.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 01:39:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,106\nCDSs (total) :: 3,031\nGenes (coding) :: 2,965\nCDSs (with protein) :: 2,965\nGenes (RNA) :: 75\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 66\nCDSs (without protein) :: 66\nPseudo Genes (ambiguous residues) :: 0 of 66\nPseudo Genes (frameshifted) :: 22 of 66\nPseudo Genes (incomplete) :: 40 of 66\nPseudo Genes (internal stop) :: 17 of 66\nPseudo Genes (multiple problems) :: 13 of 66\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_019091443.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019089374.1
COORDINATES: similar to AA sequence:RefSeq:WP_010511999.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396677.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611908.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003517203.1
COORDINATES: similar to AA sequence:RefSeq:WP_012227838.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611557.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019089371.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012813307.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014849395.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012813306.1
Members of this family include DotD of type IVB secretion systems and TraH of plasmid conjugative plasmid systems, both lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012813305.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012813304.1
COORDINATES: protein motif:HMM:NF038220.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813302.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012813301.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813300.1
COORDINATES: similar to AA sequence:RefSeq:WP_010511860.1
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: similar to AA sequence:RefSeq:WP_014106803.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626889.1
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_006115563.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115562.1
COORDINATES: similar to AA sequence:RefSeq:WP_019089347.1
COORDINATES: similar to AA sequence:RefSeq:WP_019089348.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630483.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813210.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115557.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813211.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813212.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396085.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626741.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019089358.1
COORDINATES: similar to AA sequence:RefSeq:WP_019089359.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626515.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003626735.1
COORDINATES: similar to AA sequence:RefSeq:WP_019089472.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611979.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284653.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827092.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_076611628.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019089467.1
COORDINATES: protein motif:HMM:NF025080.2