Moraxella catarrhalis strain CCRI-195ME plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Moraxella.
Complete genome sequence of Moraxella catarrhalis strain CCRI-195ME, isolated from the middle ear
Submitted (21-NOV-2016) Institute for Glycomics, Griffith University, Gold Coast, Queensland 4215, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP018060.1.\n\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. July 2014\nGenome Coverage :: missing\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 05:01:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,903\nCDSs (total) :: 1,837\nGenes (coding) :: 1,814\nCDSs (with protein) :: 1,814\nGenes (RNA) :: 66\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 23\nCDSs (without protein) :: 23\nPseudo Genes (ambiguous residues) :: 0 of 23\nPseudo Genes (frameshifted) :: 12 of 23\nPseudo Genes (incomplete) :: 13 of 23\nPseudo Genes (internal stop) :: 7 of 23\nPseudo Genes (multiple problems) :: 8 of 23\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
The Research Institute at Nationwide Children's
COORDINATES: protein motif:HMM:NF013014.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
H-NS family nucleoid-associated regulatory protein
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003658505.1
COORDINATES: protein motif:HMM:NF015205.2
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: similar to AA sequence:RefSeq:WP_011733824.1
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017892.2
COORDINATES: similar to AA sequence:RefSeq:WP_005401865.1
COORDINATES: protein motif:HMM:NF018666.2
COORDINATES: protein motif:HMM:TIGR02742.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_000618010.1
conjugal transfer pilus assembly protein TraU
COORDINATES: protein motif:HMM:TIGR02743.1
type-F conjugative transfer system protein TraW
COORDINATES: protein motif:HMM:NF021981.2
COORDINATES: protein motif:HMM:TIGR02746.1
COORDINATES: protein motif:HMM:TIGR02747.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: protein motif:HMM:NF024498.2
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: protein motif:HMM:NF018311.2
type-F conjugative transfer system secretin TraK
COORDINATES: protein motif:HMM:NF017152.2
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: protein motif:HMM:TIGR02762.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_004949501.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF013793.2