Streptosporangium roseum DSM 43021 plasmid pSROS01, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Streptosporangiales; Streptosporangiaceae; Streptosporangium.
Complete genome sequence of Streptosporangium roseum type strain (NI 9100)
The complete plasmid of Streptosporangium roseum DSM 43021
Submitted (10-NOV-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001815.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4082769\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Streptosporangium roseum NI 9100, DSM\n 43021\nCulture Collection ID :: DSM 43021, ATCC 12428, CBS 313.56, IAM\n 14294, IFO 3776, JCM 3005\nGOLD Stamp ID :: Gi02229\nFunding Program :: DOE-GEBA 2007\nGene Calling Method :: GeneMark\nIsolation Site :: Vegetable garden soil\nOxygen Requirement :: Aerobe\nCell Shape :: Filament-shaped\nSporulation :: Sporulating\nTemperature Range :: Mesophile\nTemperature Optimum :: 28C\nGram Staining :: gram+\nBiotic Relationship :: Free living\nDiseases :: None\nHabitat :: Soil\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 03:05:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 9,306\nCDSs (total) :: 9,222\nGenes (coding) :: 9,095\nCDSs (with protein) :: 9,095\nGenes (RNA) :: 84\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 3\nPseudo Genes (total) :: 127\nCDSs (without protein) :: 127\nPseudo Genes (ambiguous residues) :: 0 of 127\nPseudo Genes (frameshifted) :: 42 of 127\nPseudo Genes (incomplete) :: 100 of 127\nPseudo Genes (internal stop) :: 10 of 127\nPseudo Genes (multiple problems) :: 23 of 127\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012888899.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0015616 - DNA translocase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024970.2
COORDINATES: protein motif:HMM:NF016564.2
SsgA family sporulation/cell division regulator
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: similar to AA sequence:RefSeq:WP_018684857.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006544846.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_005249964.1
COORDINATES: similar to AA sequence:RefSeq:WP_003805784.1
COORDINATES: similar to AA sequence:RefSeq:WP_018772657.1
COORDINATES: similar to AA sequence:RefSeq:WP_003805781.1
COORDINATES: similar to AA sequence:RefSeq:WP_009741308.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611352.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018806698.1
GO:0016787 - hydrolase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012514.2