Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed2.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (17-SEP-2019) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP044087.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 1.4\nGenome Coverage :: 657.89x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 04:29:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,634\nCDSs (total) :: 5,541\nGenes (coding) :: 5,423\nCDSs (with protein) :: 5,423\nGenes (RNA) :: 93\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 4\nPseudo Genes (total) :: 118\nCDSs (without protein) :: 118\nPseudo Genes (ambiguous residues) :: 0 of 118\nPseudo Genes (frameshifted) :: 53 of 118\nPseudo Genes (incomplete) :: 65 of 118\nPseudo Genes (internal stop) :: 24 of 118\nPseudo Genes (multiple problems) :: 22 of 118\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004251692.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009615619.1
COORDINATES: similar to AA sequence:RefSeq:WP_003098388.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017519575.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017640262.1
COORDINATES: similar to AA sequence:RefSeq:WP_016484473.1
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017477253.1
COORDINATES: similar to AA sequence:RefSeq:WP_016852031.1
COORDINATES: protein motif:HMM:NF038368.1
LysC is an Rz1-like component of a phage lytic system, substantially overlapping although not fully embedded in the gene for the Rz-like LysB component.; LysC is an Rz1-like component of a phage lytic system, substantially overlapping although not fully embedded in the gene for the Rz-like LysB component; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003098381.1
COORDINATES: similar to AA sequence:RefSeq:WP_016484478.1
COORDINATES: similar to AA sequence:RefSeq:WP_017477259.1
COORDINATES: similar to AA sequence:RefSeq:WP_012702276.1
COORDINATES: similar to AA sequence:RefSeq:WP_017336930.1
COORDINATES: similar to AA sequence:RefSeq:WP_010213923.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003150544.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017335987.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003150546.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_004574519.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005413391.1
COORDINATES: similar to AA sequence:RefSeq:WP_004574521.1
COORDINATES: similar to AA sequence:RefSeq:WP_020795286.1
mercuric resistance transcriptional repressor protein MerD
COORDINATES: similar to AA sequence:RefSeq:WP_008567175.1
COORDINATES: similar to AA sequence:RefSeq:WP_020795287.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004574525.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229640.1
GO:0045340 - mercury ion binding [Evidence IEA]
mercury resistance system periplasmic binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:YP_005229639.1
COORDINATES: similar to AA sequence:RefSeq:WP_004574528.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004574529.1
co-regulatory protein PtrA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017477231.1
COORDINATES: protein motif:HMM:NF016487.2
ogr/Delta-like zinc finger family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014717543.1
COORDINATES: similar to AA sequence:RefSeq:WP_017134384.1
COORDINATES: similar to AA sequence:RefSeq:WP_013715291.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF022170.2
COORDINATES: similar to AA sequence:RefSeq:WP_017477239.1
COORDINATES: similar to AA sequence:RefSeq:WP_017477240.1
COORDINATES: similar to AA sequence:RefSeq:WP_017336911.1
COORDINATES: similar to AA sequence:RefSeq:WP_007928190.1
GO:0098003 - viral tail assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003199739.1
COORDINATES: similar to AA sequence:RefSeq:WP_019818209.1
COORDINATES: similar to AA sequence:RefSeq:WP_017519577.1
COORDINATES: similar to AA sequence:RefSeq:WP_016852035.1
COORDINATES: similar to AA sequence:RefSeq:WP_015270932.1
COORDINATES: similar to AA sequence:RefSeq:WP_019443272.1
COORDINATES: similar to AA sequence:RefSeq:WP_015372714.1
COORDINATES: similar to AA sequence:RefSeq:WP_012702270.1
COORDINATES: similar to AA sequence:RefSeq:WP_017640258.1
LysC is an Rz1-like component of a phage lytic system, substantially overlapping although not fully embedded in the gene for the Rz-like LysB component.; LysC is an Rz1-like component of a phage lytic system, substantially overlapping although not fully embedded in the gene for the Rz-like LysB component; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR03495.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
LysB family phage lysis regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_016484477.1
COORDINATES: similar to AA sequence:RefSeq:WP_015270924.1
COORDINATES: similar to AA sequence:RefSeq:WP_015270923.1
GO:0019028 - viral capsid [Evidence IEA]
GO:0019069 - viral capsid assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005917723.1
COORDINATES: similar to AA sequence:RefSeq:WP_003199774.1
COORDINATES: similar to AA sequence:RefSeq:WP_015978419.1
COORDINATES: similar to AA sequence:RefSeq:WP_017700827.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017138666.1
GO:0004519 - endonuclease activity [Evidence IEA]
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016852721.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019367217.1
COORDINATES: similar to AA sequence:RefSeq:WP_005298703.1
COORDINATES: similar to AA sequence:RefSeq:WP_004881244.1
reverse transcriptase domain-containing protein
COORDINATES: protein motif:HMM:NF013235.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005917920.1
COORDINATES: similar to AA sequence:RefSeq:WP_015372731.1
COORDINATES: similar to AA sequence:RefSeq:WP_020327172.1
COORDINATES: similar to AA sequence:RefSeq:WP_015967207.1
COORDINATES: similar to AA sequence:RefSeq:WP_017519583.1
COORDINATES: similar to AA sequence:RefSeq:WP_012702258.1
COORDINATES: similar to AA sequence:RefSeq:WP_009459068.1
COORDINATES: similar to AA sequence:RefSeq:WP_010213922.1
COORDINATES: similar to AA sequence:RefSeq:WP_017641689.1
COORDINATES: similar to AA sequence:RefSeq:WP_013392719.1
COORDINATES: similar to AA sequence:RefSeq:WP_005745047.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008080525.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_017104185.1
GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02607.1
COORDINATES: similar to AA sequence:RefSeq:WP_004662294.1
COORDINATES: protein motif:HMM:NF020704.2
COORDINATES: similar to AA sequence:RefSeq:WP_013590016.1
COORDINATES: similar to AA sequence:RefSeq:WP_003294370.1
COORDINATES: protein motif:HMM:TIGR01760.1