Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (17-SEP-2019) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP044084.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 1.4\nGenome Coverage :: 657.89x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 04:29:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,634\nCDSs (total) :: 5,541\nGenes (coding) :: 5,423\nCDSs (with protein) :: 5,423\nGenes (RNA) :: 93\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 4\nPseudo Genes (total) :: 118\nCDSs (without protein) :: 118\nPseudo Genes (ambiguous residues) :: 0 of 118\nPseudo Genes (frameshifted) :: 53 of 118\nPseudo Genes (incomplete) :: 65 of 118\nPseudo Genes (internal stop) :: 24 of 118\nPseudo Genes (multiple problems) :: 22 of 118\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017684707.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008062419.1
COORDINATES: similar to AA sequence:RefSeq:WP_008062418.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010482380.1
COORDINATES: similar to AA sequence:RefSeq:WP_017903179.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019341976.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF038336.1
COORDINATES: similar to AA sequence:RefSeq:WP_019408458.1
COORDINATES: similar to AA sequence:RefSeq:WP_019341971.1
COORDINATES: similar to AA sequence:RefSeq:WP_019341968.1
COORDINATES: similar to AA sequence:RefSeq:WP_016851948.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003292740.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003292741.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011270155.1
GO:0004803 - transposase activity [Evidence IEA]
IS5-like element ISPa16 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010562642.1
COORDINATES: similar to AA sequence:RefSeq:WP_017700743.1
GO:0004386 - helicase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010799236.1
COORDINATES: protein motif:HMM:NF024724.2
COORDINATES: similar to AA sequence:RefSeq:WP_019367519.1
COORDINATES: similar to AA sequence:RefSeq:WP_016501564.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015692.2
GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015041474.1
TM0106 family RecB-like putative nuclease
COORDINATES: similar to AA sequence:RefSeq:WP_015093396.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010220495.1
COORDINATES: similar to AA sequence:RefSeq:WP_017279712.1
COORDINATES: protein motif:HMM:NF024498.2
COORDINATES: similar to AA sequence:RefSeq:WP_019366955.1
COORDINATES: similar to AA sequence:RefSeq:WP_019366954.1
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017086042.1
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017892.2
COORDINATES: similar to AA sequence:RefSeq:WP_011899326.1
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: similar to AA sequence:RefSeq:WP_019438708.1
COORDINATES: similar to AA sequence:RefSeq:WP_012779117.1
COORDINATES: similar to AA sequence:RefSeq:WP_004574120.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019933202.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013970575.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
6-hydroxy-3-succinoylpyridine hydroxylase
COORDINATES: similar to AA sequence:RefSeq:WP_003153636.1
COORDINATES: similar to AA sequence:RefSeq:WP_005737550.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842830.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF018714.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612005.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016486483.1
COORDINATES: similar to AA sequence:RefSeq:WP_003462397.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611154.1
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003291329.1
GO:0018576 - catechol 1,2-dioxygenase activity [Evidence IEA]
GO:0019615 - catechol catabolic process, ortho-cleavage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_251198.1
GO:0016159 - muconolactone delta-isomerase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017339355.1
COORDINATES: similar to AA sequence:RefSeq:WP_013791132.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611196.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018250941.1
COORDINATES: similar to AA sequence:RefSeq:WP_019297953.1
COORDINATES: similar to AA sequence:RefSeq:WP_008075362.1
COORDINATES: protein motif:HMM:NF013228.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020191069.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013791136.1
COORDINATES: similar to AA sequence:RefSeq:WP_003201886.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020290283.1
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013791127.1
benzoate 1,2-dioxygenase electron transfer component BenC
COORDINATES: similar to AA sequence:RefSeq:WP_009619299.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_009049924.1
aromatic acid/H+ symport family MFS transporter
COORDINATES: similar to AA sequence:RefSeq:WP_009619315.1
benzoate/H(+) symporter BenE family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_007360680.1
COORDINATES: similar to AA sequence:RefSeq:WP_014726296.1
COORDINATES: similar to AA sequence:RefSeq:WP_019364516.1
COORDINATES: similar to AA sequence:RefSeq:WP_019366048.1
COORDINATES: similar to AA sequence:RefSeq:WP_019366047.1
COORDINATES: similar to AA sequence:RefSeq:WP_019365358.1
COORDINATES: similar to AA sequence:RefSeq:WP_016498454.1
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: protein motif:HMM:NF015652.2
COORDINATES: protein motif:HMM:TIGR00254.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_008346336.1
COORDINATES: similar to AA sequence:RefSeq:WP_007705146.1
GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020066796.1
COORDINATES: protein motif:HMM:NF023299.2
COORDINATES: protein motif:HMM:NF013502.2
COORDINATES: similar to AA sequence:RefSeq:WP_012314518.1
COORDINATES: protein motif:HMM:NF014567.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_019406687.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019366042.1
COORDINATES: similar to AA sequence:RefSeq:WP_019365453.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019366038.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611183.1
COORDINATES: similar to AA sequence:RefSeq:WP_005731980.1
COORDINATES: protein motif:HMM:NF012301.2
histone-like nucleoid-structuring protein, MvaT/MvaU family
COORDINATES: protein motif:HMM:NF024755.2
COORDINATES: protein motif:HMM:NF017973.2
COORDINATES: protein motif:HMM:NF022792.2
COORDINATES: similar to AA sequence:RefSeq:WP_019367221.1
COORDINATES: similar to AA sequence:RefSeq:WP_000414661.1
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019364644.1
COORDINATES: similar to AA sequence:RefSeq:WP_019364642.1
COORDINATES: similar to AA sequence:RefSeq:WP_019485593.1
COORDINATES: similar to AA sequence:RefSeq:WP_019364639.1
COORDINATES: similar to AA sequence:RefSeq:WP_005375206.1
COORDINATES: similar to AA sequence:RefSeq:WP_019364636.1
COORDINATES: protein motif:HMM:NF011458.0
conjugal transfer mating pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_017085236.1
COORDINATES: protein motif:HMM:NF021209.2
TrbC family F-type conjugative pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_001010738.1
COORDINATES: similar to AA sequence:RefSeq:WP_019363824.1
thioredoxin fold domain-containing protein
COORDINATES: protein motif:HMM:NF019371.2
COORDINATES: similar to AA sequence:RefSeq:WP_019363823.1
COORDINATES: similar to AA sequence:RefSeq:WP_019363820.1
COORDINATES: similar to AA sequence:RefSeq:WP_000993344.1
TraA family conjugative transfer protein
COORDINATES: protein motif:HMM:TIGR02747.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_011899400.1
COORDINATES: protein motif:HMM:NF018311.2
type-F conjugative transfer system secretin TraK
COORDINATES: protein motif:HMM:NF017152.2
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_011899398.1
type IV conjugative transfer system protein TraL
COORDINATES: protein motif:HMM:NF025706.2
COORDINATES: similar to AA sequence:RefSeq:WP_019365471.1
COORDINATES: similar to AA sequence:RefSeq:WP_019365469.1
GO:0003674 - molecular_function [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: protein motif:HMM:NF041494.1
COORDINATES: protein motif:HMM:NF024503.2
TonB C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019364239.1
COORDINATES: protein motif:HMM:NF013506.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008250762.1
COORDINATES: similar to AA sequence:RefSeq:WP_003296297.1
COORDINATES: similar to AA sequence:RefSeq:WP_014336077.1
COORDINATES: similar to AA sequence:RefSeq:WP_003296299.1
COORDINATES: protein motif:HMM:TIGR03734.1
COORDINATES: protein motif:HMM:TIGR03741.1
COORDINATES: similar to AA sequence:RefSeq:WP_010792614.1
COORDINATES: similar to AA sequence:RefSeq:WP_019367243.1
COORDINATES: similar to AA sequence:RefSeq:WP_019367242.1
COORDINATES: similar to AA sequence:RefSeq:WP_010110527.1
GO:0008800 - beta-lactamase activity [Evidence IEA]; GO:0008658 - penicillin binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013124600.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_003155746.1
COORDINATES: similar to AA sequence:RefSeq:WP_011517528.1
COORDINATES: similar to AA sequence:RefSeq:WP_000904941.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005229645.1
COORDINATES: similar to AA sequence:RefSeq:WP_001277466.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016240396.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000654684.1
mercury resistance system transport protein MerF
COORDINATES: similar to AA sequence:RefSeq:WP_011633167.1
GO:0045340 - mercury ion binding [Evidence IEA]
mercury resistance system periplasmic binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:YP_005229639.1
COORDINATES: similar to AA sequence:RefSeq:WP_000414383.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019363910.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017940302.1
COORDINATES: similar to AA sequence:RefSeq:WP_017337066.1
COORDINATES: similar to AA sequence:RefSeq:WP_013693149.1
ArsO family NAD(P)H-dependent flavin-containing monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_009523256.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017844875.1
COORDINATES: similar to AA sequence:RefSeq:WP_020290240.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003212605.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015105 - arsenite transmembrane transporter activity [Evidence IEA]
GO:0046685 - response to arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003424689.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_003424690.1
COORDINATES: protein motif:HMM:NF013015.2
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF023227.2
COORDINATES: similar to AA sequence:RefSeq:WP_019367167.1
COORDINATES: similar to AA sequence:RefSeq:WP_009616772.1
COORDINATES: similar to AA sequence:RefSeq:WP_019367465.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016359306.1
COORDINATES: similar to AA sequence:RefSeq:WP_005109816.1
COORDINATES: protein motif:HMM:NF026232.2
COORDINATES: similar to AA sequence:RefSeq:WP_004577665.1
COORDINATES: similar to AA sequence:RefSeq:WP_012053039.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003253468.1
COORDINATES: similar to AA sequence:RefSeq:WP_014860516.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
phosphoethanolamine--lipid A transferase
COORDINATES: protein motif:HMM:NF024183.2
COORDINATES: similar to AA sequence:RefSeq:WP_004577663.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_011953105.1
COORDINATES: similar to AA sequence:RefSeq:WP_004577661.1
COORDINATES: similar to AA sequence:RefSeq:WP_009395889.1
heavy metal response regulator transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_009395888.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010951443.1
COORDINATES: similar to AA sequence:RefSeq:WP_003253448.1
COORDINATES: similar to AA sequence:RefSeq:WP_003253446.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003253444.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_019438068.1
OprO/OprP family phosphate-selective porin
COORDINATES: similar to AA sequence:RefSeq:WP_003253439.1
COORDINATES: similar to AA sequence:RefSeq:WP_004576058.1
COORDINATES: similar to AA sequence:RefSeq:WP_004576057.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003253432.1
COORDINATES: similar to AA sequence:RefSeq:WP_010951454.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_020302560.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016712696.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019818113.1
GO:0009279 - cell outer membrane [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA]; GO:0046930 - pore complex [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
GO:0015802 - basic amino acid transport [Evidence IEA]; GO:0006811 - monoatomic ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612056.1
ISL3-like element ISPpu12 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013504665.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014702287.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001219642.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]
Cd(II)/Pb(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004667022.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612006.1
COORDINATES: similar to AA sequence:RefSeq:WP_003117278.1
Tn3-like element ISPa42 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004374622.1
Tn3 family transposase post-transcriptional regulator TnpC
COORDINATES: similar to AA sequence:RefSeq:WP_004374624.1
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004574341.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004374627.1
COORDINATES: similar to AA sequence:RefSeq:WP_003117282.1
COORDINATES: similar to AA sequence:RefSeq:WP_003452300.1
COORDINATES: similar to AA sequence:RefSeq:WP_003452302.1
COORDINATES: similar to AA sequence:RefSeq:WP_003223780.1
COORDINATES: similar to AA sequence:RefSeq:WP_004574337.1
COORDINATES: similar to AA sequence:RefSeq:WP_003139525.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003460123.1
COORDINATES: similar to AA sequence:RefSeq:WP_017940231.1
COORDINATES: similar to AA sequence:RefSeq:WP_003452314.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_003139535.1
co-regulatory protein PtrA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003117291.1
IS5-like element ISPa41 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_003460126.1
COORDINATES: similar to AA sequence:RefSeq:WP_003139536.1
COORDINATES: similar to AA sequence:RefSeq:WP_004577565.1
COORDINATES: similar to AA sequence:RefSeq:WP_017675724.1
GO:0046872 - metal ion binding [Evidence IEA]
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003139540.1
COORDINATES: similar to AA sequence:RefSeq:WP_003139541.1
COORDINATES: similar to AA sequence:RefSeq:WP_003460131.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003246761.1
COORDINATES: similar to AA sequence:RefSeq:WP_003246762.1
COORDINATES: similar to AA sequence:RefSeq:WP_004577570.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016487037.1
COORDINATES: similar to AA sequence:RefSeq:WP_004577572.1
COORDINATES: similar to AA sequence:RefSeq:WP_003139556.1
COORDINATES: similar to AA sequence:RefSeq:WP_004374692.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003117288.1
COORDINATES: similar to AA sequence:RefSeq:WP_003117289.1
COORDINATES: similar to AA sequence:RefSeq:WP_004577578.1
COORDINATES: similar to AA sequence:RefSeq:WP_004574529.1
COORDINATES: similar to AA sequence:RefSeq:WP_004574528.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229640.1
COORDINATES: similar to AA sequence:RefSeq:WP_004574525.1
COORDINATES: similar to AA sequence:RefSeq:WP_020795287.1
COORDINATES: similar to AA sequence:RefSeq:WP_008567175.1
COORDINATES: similar to AA sequence:RefSeq:WP_020795286.1
mercuric resistance transcriptional repressor protein MerD
COORDINATES: similar to AA sequence:RefSeq:WP_004574521.1
COORDINATES: similar to AA sequence:RefSeq:WP_005413391.1
COORDINATES: similar to AA sequence:RefSeq:WP_004574519.1
COORDINATES: similar to AA sequence:RefSeq:WP_003150546.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_017335987.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003150544.1
COORDINATES: protein motif:HMM:NF027890.2
COORDINATES: similar to AA sequence:RefSeq:WP_010490659.1
COORDINATES: similar to AA sequence:RefSeq:WP_009050855.1
COORDINATES: similar to AA sequence:RefSeq:WP_010799564.1
COORDINATES: similar to AA sequence:RefSeq:WP_019365352.1
COORDINATES: protein motif:HMM:NF024880.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017245526.1
COORDINATES: similar to AA sequence:RefSeq:WP_019365351.1
COORDINATES: similar to AA sequence:RefSeq:WP_010799569.1
COORDINATES: similar to AA sequence:RefSeq:WP_010799570.1
COORDINATES: similar to AA sequence:RefSeq:WP_019365348.1
COORDINATES: similar to AA sequence:RefSeq:WP_016779392.1
COORDINATES: similar to AA sequence:RefSeq:WP_017516950.1
COORDINATES: similar to AA sequence:RefSeq:WP_007906048.1
COORDINATES: similar to AA sequence:RefSeq:WP_017709558.1
COORDINATES: similar to AA sequence:RefSeq:WP_019364380.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
copper homeostasis periplasmic binding protein CopC
COORDINATES: similar to AA sequence:RefSeq:WP_020799421.1
copper homeostasis membrane protein CopD
COORDINATES: similar to AA sequence:RefSeq:WP_019364382.1
COORDINATES: similar to AA sequence:RefSeq:WP_019364385.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011078035.1
COORDINATES: similar to AA sequence:RefSeq:WP_003298428.1
COORDINATES: protein motif:HMM:NF012905.2
COORDINATES: similar to AA sequence:RefSeq:WP_017246339.1
COORDINATES: similar to AA sequence:RefSeq:WP_014822246.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019365444.1
COORDINATES: similar to AA sequence:RefSeq:WP_003292648.1
COORDINATES: protein motif:HMM:NF023095.2
COORDINATES: similar to AA sequence:RefSeq:WP_003292646.1
COORDINATES: similar to AA sequence:RefSeq:WP_014822241.1
COORDINATES: similar to AA sequence:RefSeq:WP_015275569.1
COORDINATES: similar to AA sequence:RefSeq:WP_014853003.1
COORDINATES: similar to AA sequence:RefSeq:WP_019365437.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_015275568.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014822235.1
COORDINATES: similar to AA sequence:RefSeq:WP_015275566.1
COORDINATES: similar to AA sequence:RefSeq:WP_019366370.1
COORDINATES: similar to AA sequence:RefSeq:WP_003298767.1
COORDINATES: similar to AA sequence:RefSeq:WP_016975890.1
COORDINATES: similar to AA sequence:RefSeq:WP_019366374.1
COORDINATES: similar to AA sequence:RefSeq:WP_003298761.1
COORDINATES: protein motif:HMM:NF025539.2
COORDINATES: similar to AA sequence:RefSeq:WP_019365857.1
GO:0006274 - DNA replication termination [Evidence IEA]
DNA replication terminus site-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005787000.1
COORDINATES: similar to AA sequence:RefSeq:WP_019365861.1
COORDINATES: similar to AA sequence:RefSeq:WP_019364505.1
COORDINATES: similar to AA sequence:RefSeq:WP_019364817.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019364508.1
COORDINATES: protein motif:HMM:NF017832.2
COORDINATES: similar to AA sequence:RefSeq:WP_019364822.1
COORDINATES: similar to AA sequence:RefSeq:WP_019364512.1
COORDINATES: similar to AA sequence:RefSeq:WP_019366050.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600753.1
COORDINATES: similar to AA sequence:RefSeq:WP_015155613.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002555965.1
COORDINATES: similar to AA sequence:RefSeq:WP_008100759.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666649.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077977.1
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: similar to AA sequence:RefSeq:WP_003159634.1
GO:0009279 - cell outer membrane [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019689309.1
COORDINATES: similar to AA sequence:RefSeq:WP_014756815.1
COORDINATES: similar to AA sequence:RefSeq:WP_014756814.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003159702.1
COORDINATES: similar to AA sequence:RefSeq:NP_249570.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014756811.1
GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014756810.1
COORDINATES: similar to AA sequence:RefSeq:WP_003126472.1
COORDINATES: similar to AA sequence:RefSeq:WP_003126471.1
COORDINATES: similar to AA sequence:RefSeq:WP_003126469.1
COORDINATES: similar to AA sequence:RefSeq:WP_014756806.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014756805.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003126462.1
COORDINATES: similar to AA sequence:RefSeq:WP_003126461.1
COORDINATES: similar to AA sequence:RefSeq:WP_011297670.1
COORDINATES: similar to AA sequence:RefSeq:WP_014756801.1
COORDINATES: similar to AA sequence:RefSeq:WP_014756800.1
acetyl-CoA hydrolase/transferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018641172.1
COORDINATES: similar to AA sequence:RefSeq:WP_008095273.1
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_013692888.1
COORDINATES: similar to AA sequence:RefSeq:WP_006612047.1
COORDINATES: similar to AA sequence:RefSeq:WP_009617003.1
COORDINATES: similar to AA sequence:RefSeq:WP_017085250.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611188.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842821.1
COORDINATES: similar to AA sequence:RefSeq:WP_019364589.1
COORDINATES: similar to AA sequence:RefSeq:WP_007195351.1
COORDINATES: similar to AA sequence:RefSeq:WP_010845909.1
COORDINATES: similar to AA sequence:RefSeq:WP_007158818.1
COORDINATES: protein motif:HMM:NF016228.2
COORDINATES: similar to AA sequence:RefSeq:WP_005742664.1
COORDINATES: similar to AA sequence:RefSeq:WP_005742663.1
COORDINATES: similar to AA sequence:RefSeq:WP_000971921.1
COORDINATES: similar to AA sequence:RefSeq:WP_014728587.1
COORDINATES: similar to AA sequence:RefSeq:WP_011870214.1
COORDINATES: similar to AA sequence:RefSeq:WP_013792824.1
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: similar to AA sequence:RefSeq:WP_019367245.1
COORDINATES: protein motif:HMM:NF025054.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004530280.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017526720.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003052027.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_017848896.1
COORDINATES: similar to AA sequence:RefSeq:WP_019367228.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611956.1
COORDINATES: similar to AA sequence:RefSeq:WP_003448662.1
putative addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:WP_003120987.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017708139.1
COORDINATES: similar to AA sequence:RefSeq:WP_017231441.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004637194.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006051503.1
COORDINATES: similar to AA sequence:RefSeq:WP_011881597.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017132941.1
COORDINATES: similar to AA sequence:RefSeq:WP_017132940.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980493.1
COORDINATES: protein motif:HMM:NF012354.2
COORDINATES: similar to AA sequence:RefSeq:WP_019367385.1
COORDINATES: similar to AA sequence:RefSeq:WP_015829292.1
COORDINATES: similar to AA sequence:RefSeq:WP_019364532.1
COORDINATES: similar to AA sequence:RefSeq:WP_018825228.1
COORDINATES: similar to AA sequence:RefSeq:WP_012251226.1
COORDINATES: similar to AA sequence:RefSeq:WP_010568120.1
COORDINATES: similar to AA sequence:RefSeq:WP_019364527.1
COORDINATES: similar to AA sequence:RefSeq:WP_001261288.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008065623.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF022073.2
GO:0005615 - extracellular space [Evidence IEA]
GO:0047989 - hydroxybutyrate-dimer hydrolase activity [Evidence IEA]
GO:0019605 - butyrate metabolic process [Evidence IEA]
3-hydroxybutyrate oligomer hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012700335.1
GO:0015137 - citrate transmembrane transporter activity [Evidence IEA]
GO:0015746 - citrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010483186.1
COORDINATES: similar to AA sequence:RefSeq:WP_013693257.1
acyclic terpene utilization AtuA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014338413.1
COORDINATES: similar to AA sequence:RefSeq:WP_015649580.1
COORDINATES: similar to AA sequence:RefSeq:WP_013274629.1
COORDINATES: similar to AA sequence:RefSeq:WP_017453651.1
COORDINATES: similar to AA sequence:RefSeq:WP_007162805.1
COORDINATES: similar to AA sequence:RefSeq:WP_007162804.1
COORDINATES: similar to AA sequence:RefSeq:WP_007162803.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010429021.1
COORDINATES: similar to AA sequence:RefSeq:WP_007162801.1
GO:0004328 - formamidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002552371.1
COORDINATES: similar to AA sequence:RefSeq:WP_007162799.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005763948.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007162797.1
GO:0004039 - allophanate hydrolase activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]