Lactobacillus crispatus strain DC21.1 plasmid pLcDC21.1_1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.
Galacto-oligosaccharide modulates the juvenile microbiome to improve broiler chicken performance
Submitted (09-APR-2019) Division of Microbiology, Brewing & Biotechnology, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, United Kingdom (Great Britain)
REFSEQ INFORMATION: The reference sequence is identical to\nCP039267.1.\nBacteria and source DNA available from NCIMB:42771.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 16-MAR-2017\nAssembly Method :: CLC Genomics Workbench v. 9.5.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 218.0x\nSequencing Technology :: Illumina MiSeq; PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:23:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,031\nCDSs (total) :: 1,949\nGenes (coding) :: 1,884\nCDSs (with protein) :: 1,884\nGenes (RNA) :: 82\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 3\nPseudo Genes (total) :: 65\nCDSs (without protein) :: 65\nPseudo Genes (ambiguous residues) :: 0 of 65\nPseudo Genes (frameshifted) :: 37 of 65\nPseudo Genes (incomplete) :: 26 of 65\nPseudo Genes (internal stop) :: 16 of 65\nPseudo Genes (multiple problems) :: 13 of 65\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013854973.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016396016.1
COORDINATES: similar to AA sequence:RefSeq:WP_003604025.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00230
T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_009559635.1
type I toxin-antitoxin system Fst family toxin
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003625689.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013641316.1
COORDINATES: similar to AA sequence:RefSeq:WP_013855360.1
COORDINATES: similar to AA sequence:RefSeq:WP_012212312.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896296.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013085590.1
COORDINATES: similar to AA sequence:RefSeq:WP_005729771.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007127102.1
COORDINATES: similar to AA sequence:RefSeq:WP_008472480.1
helveticin J family class III bacteriocin
COORDINATES: similar to AA sequence:RefSeq:WP_003628394.1