Lactobacillus crispatus strain DC21.1 plasmid pLcDC21.1_1, complete sequence.
type: Entry
definition: Lactobacillus crispatus strain DC21.1 plasmid pLcDC21.1_1, complete sequence.
sequence version: NZ_CP039267.1
sequence date: 2023-03-27
sequence: sequence
division: CON
label: NZ_CP039267.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11372136
keyword: RefSeq
source: Lactobacillus crispatus
organism: Lactobacillus crispatus
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP039267.1.\nBacteria and source DNA available from NCIMB:42771.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 16-MAR-2017\nAssembly Method :: CLC Genomics Workbench v. 9.5.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 218.0x\nSequencing Technology :: Illumina MiSeq; PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:23:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,031\nCDSs (total) :: 1,949\nGenes (coding) :: 1,884\nCDSs (with protein) :: 1,884\nGenes (RNA) :: 82\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 3\nPseudo Genes (total) :: 65\nCDSs (without protein) :: 65\nPseudo Genes (ambiguous residues) :: 0 of 65\nPseudo Genes (frameshifted) :: 37 of 65\nPseudo Genes (incomplete) :: 26 of 65\nPseudo Genes (internal stop) :: 16 of 65\nPseudo Genes (multiple problems) :: 13 of 65\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16343
topology: circular
so has quality: SO_0000988
location: 1..16343
location: region:1-16343:1
RO_0002162: 47770

NZ_CP039267
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11372136
type: BioSample
SIO_000068: biosample

1
title: Galacto-oligosaccharide modulates the juvenile microbiome to improve broiler chicken performance
author: Richards, P.J.
author: Flaujac Lafontaine, G.M.
author: Connerton, P.L.
author: Liang, L.
author: Asiani, K.
author: Fish, N.M.
author: Connerton, I.F.
journal: Unpublished

2
title: Direct Submission
author: Connerton, I.F.
journal: Submitted (09-APR-2019) Division of Microbiology, Brewing & Biotechnology, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, United Kingdom (Great Britain)

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16343:1
position: 16343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16343:1:source
so part of: sequence
organism: Lactobacillus crispatus
mol type: genomic DNA
strain: DC21.1
host: Gallus gallus
culture collection: NCIMB:42771
plasmid: pLcDC21.1_1
country: United Kingdom: Loughborough
collection date: 2016
collected by: P L Connerton

47770
type: Taxonomy
SIO_000068: taxonomy

E6A57_RS10085
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10085
old locus tag: E6A57_10120
so part of: sequence
location: complement(207..851)
location: region:207-851:-1
so has part: feature:207-851:-1:exon
subclass of: SO_0000010

69824367
type: Gene
SIO_000068: ncbigene

position:207:-1
position: 207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:851:-1
position: 851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207-851:-1:exon

E6A57_RS10085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10085
old locus tag: E6A57_10120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013854973.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTAQAAVAVSLLSVAAPTFASTAQASTIESSQTQSKLNLSTQKKLDPYVTVENNHYVLSENAKKVVSEEEYNAAKQVIAQTNAAVENSGSVINQNTKVATNDFTLSNDENSVVSLNKGELATRRKKYHYGVNKVTYHWNYIRVYLNKTTTQAVAAGAVGGLGALIANYVSGGLATFAVGAISSSVSALVGSSIKGGVWVDYNFLARTVTSCGWQ
SIO_010081: E6A57_RS10085
subclass of: SO_0000673
so part of: E6A57_RS10085
location: complement(207..851)
location: region:207-851:-1
so has part: feature:207-851:-1:exon

WP_158182229.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:207-851:-1:exon

E6A57_RS10090
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10090
old locus tag: E6A57_10125
so part of: sequence
location: complement(908..1186)
location: region:908-1186:-1
so has part: feature:908-1186:-1:exon
subclass of: SO_0000010

69824368
type: Gene
SIO_000068: ncbigene

position:908:-1
position: 908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1186:-1
position: 1186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:908-1186:-1:exon

E6A57_RS10090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10090
old locus tag: E6A57_10125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016396016.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVGMNSIKKILKWILGLLIINLIGLILITLYSAYYSFGTMIFGVHTESAIKDFWNTEFITAIPFVIGINLLALGTTSVRIYKKRKKKKEKNS
SIO_010081: E6A57_RS10090
subclass of: SO_0000673
so part of: E6A57_RS10090
location: complement(908..1186)
location: region:908-1186:-1
so has part: feature:908-1186:-1:exon

WP_158182230.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:908-1186:-1:exon

E6A57_RS10095
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10095
old locus tag: E6A57_10130
so part of: sequence
location: complement(1164..1754)
location: region:1164-1754:-1
so has part: feature:1164-1754:-1:exon
subclass of: SO_0000010

69824369
type: Gene
SIO_000068: ncbigene

position:1164:-1
position: 1164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1754:-1
position: 1754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1164-1754:-1:exon

E6A57_RS10095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10095
old locus tag: E6A57_10130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003604025.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGRFSKLAVSTAVAVSLLSVTAPTFTSAVYATETTQNESDNLSSTEVNAAIDNLAEQLEEAHNAAPDVDVEEMARGVMAYASGDAQETTLRRLSRGGRYSTSAFSADRFGKCMLNKMGLGELKNLAKVIFKPATVRYLKSHAWKKASALMVKAIMKYAPKKVASLAVKKLANLALPGVGWASVAWWGAQCGWDEFH
SIO_010081: E6A57_RS10095
subclass of: SO_0000673
so part of: E6A57_RS10095
location: complement(1164..1754)
location: region:1164-1754:-1
so has part: feature:1164-1754:-1:exon

WP_233263966.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1164-1754:-1:exon

misc_binding
type: Miscellaneous Binding Site
subclass of: SO_0000409
RO_0002162: 47770
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00230
inference: COORDINATES: profile:INFERNAL:1.1.4
note: T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: tRNA
so part of: sequence
location: complement(1836..2075)
location: region:1836-2075:-1
so has part: feature:1836-2075:-1:region

position:1836:-1
position: 1836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2075:-1
position: 2075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1836-2075:-1:region

E6A57_RS10100
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10100
old locus tag: E6A57_10135
so part of: sequence
location: 2270..2374
location: region:2270-2374:1
so has part: feature:2270-2374:1:exon
subclass of: SO_0000010

69824370
type: Gene
SIO_000068: ncbigene

position:2270:1
position: 2270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2374:1
position: 2374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2270-2374:1:exon

E6A57_RS10100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10100
old locus tag: E6A57_10135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009559635.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I toxin-antitoxin system Fst family toxin
translation: MPETLVTSIVAPIIVGIVLALFDHWLNHRDNDQN
SIO_010081: E6A57_RS10100
subclass of: SO_0000673
so part of: E6A57_RS10100
location: 2270..2374
location: region:2270-2374:1
so has part: feature:2270-2374:1:exon

WP_158182231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2270-2374:1:exon

E6A57_RS10105
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10105
old locus tag: E6A57_10140
so part of: sequence
location: complement(2581..3609)
location: region:2581-3609:-1
so has part: feature:2581-3609:-1:exon
subclass of: SO_0000010

69824371
type: Gene
SIO_000068: ncbigene

position:2581:-1
position: 2581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3609:-1
position: 3609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2581-3609:-1:exon

E6A57_RS10105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10105
old locus tag: E6A57_10140
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFTIVDVFQNLTREKRAMLTDGEISVLLEYIQFWNNHGRKTNMIAPRNSAICNVHGISKKTFYKHRKGLVDKGFITVESRKFQPLKDGKHRHAQGQGRQKPAIVRLADWLIKSNKISVANEQQPQKTKEKDVPKIHRTTAKPISVAELEQYGKDLAVQIGATAPVYPKQLERIKGYENKTSKEVIKLVRSYVESHNNSNAWAYYQATLEDLVRNHVNTVTELEAYNPKLAGKTRYQQQELPMMEVVKDKKNKKNSKTKYVRGKRVEQGTDWKKKTEEEHLKNARKWLGLEAGQDFPADYQGLTVDEIYNKAYKDTNQDAELQKLQQFFEDIANKTNNNAVSV
SIO_010081: E6A57_RS10105
subclass of: SO_0000673
so part of: E6A57_RS10105
location: complement(2581..3609)
location: region:2581-3609:-1
so has part: feature:2581-3609:-1:exon

WP_158182232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2581-3609:-1:exon

E6A57_RS10110
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10110
old locus tag: E6A57_10145
so part of: sequence
location: 4381..4908
location: region:4381-4908:1
so has part: feature:4381-4908:1:exon
subclass of: SO_0000010

69824372
type: Gene
SIO_000068: ncbigene

position:4381:1
position: 4381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4908:1
position: 4908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4381-4908:1:exon

E6A57_RS10110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10110
old locus tag: E6A57_10145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003625689.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MKIDKNKTYTVTQIADIAGVSKASVSRWLSDRHVSPDHTKGKAKYFNATYVEQYLKAHKAPHNKASEIPSTTELLQEQVRQLTEENKRLIARIEKQDQQIKEKDQQIANWTSQSAIISKLANDSHNVAQKLLESSNSNVDSDNEESSSVEEVNNQSNENVKKSSNSWFNHLFKRK
SIO_010081: E6A57_RS10110
subclass of: SO_0000673
so part of: E6A57_RS10110
location: 4381..4908
location: region:4381-4908:1
so has part: feature:4381-4908:1:exon

WP_158182233.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4381-4908:1:exon

E6A57_RS10225
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10225
so part of: sequence
location: 5078..5587
location: region:5078-5587:1
so has part: feature:5078-5587:1:exon
subclass of: SO_0000010

69824390
type: Gene
SIO_000068: ncbigene

position:5078:1
position: 5078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5587:1
position: 5587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5078-5587:1:exon

E6A57_RS10225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10225
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNNFSKYEIFEAAVKATKDKTLTLKDVETQLKKLGFSASDKEFSNTTKLAVVDRFKLEKAKKQSDKQVIASLEREVQILRQQLNQQDKLAELLSQIDAKIDQLPEKISDLIGQNSESKVHSNTSIESQSDDQLTSVNSLIDNSDQLSVAADNPDDGSEQNFDFYNNDDQ
SIO_010081: E6A57_RS10225
subclass of: SO_0000673
so part of: E6A57_RS10225
location: 5078..5587
location: region:5078-5587:1
so has part: feature:5078-5587:1:exon

WP_199251891.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5078-5587:1:exon

E6A57_RS10115
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10115
old locus tag: E6A57_10150
so part of: sequence
location: complement(5811..6893)
location: region:5811-6893:-1
so has part: feature:5811-6893:-1:exon
subclass of: SO_0000010

69824373
type: Gene
SIO_000068: ncbigene

position:5811:-1
position: 5811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6893:-1
position: 6893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5811-6893:-1:exon

E6A57_RS10115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10115
old locus tag: E6A57_10150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013641316.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPKNLRHIFRSELIKQRKNGIKTSRQQIKKAHNGKIADYRHIFSDNSYKKHWARAQKFADFCRENNIKKMEDITPNFAQKYLLYERDQHVNGYQGYSASTIGSDALMINHIMIGSGHWKTNQKLQKSKLPGMPKRSTLLAKQRQKSMNSREWINTHPHTYAQYKNQIDTIRAFGLRRRELTGGTSQNGRDGLGDRSLYQTKDGRLFAIVQGKGGKIRWTECRQDLQKEMKQIYHGKIRPISERPKSKAEFRHNLKNNQPFYRSFDHNVPTHIHRANYAQHMIKQLNQHQFSGTKQKTIYYRNGIKANGKTRYSKGVKTINLHQNYRIGTYQAQYGAYYQLSKYMGHNRLDVLQSYLGEGR
SIO_010081: E6A57_RS10115
subclass of: SO_0000673
so part of: E6A57_RS10115
location: complement(5811..6893)
location: region:5811-6893:-1
so has part: feature:5811-6893:-1:exon

WP_089147757.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5811-6893:-1:exon

E6A57_RS10120
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10120
old locus tag: E6A57_10155
so part of: sequence
location: complement(8322..8948)
location: region:8322-8948:-1
so has part: feature:8322-8948:-1:exon
subclass of: SO_0000010

69824374
type: Gene
SIO_000068: ncbigene

position:8322:-1
position: 8322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8948:-1
position: 8948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8322-8948:-1:exon

E6A57_RS10120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10120
old locus tag: E6A57_10155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013855360.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTNTIYGYARVSTAQQDYATQIEDLKRAGATKIFKDKYTGTTADRPEFDKLMAKIKNGDTLIVTKLDRLARNTQDALNIVKKMNAEGVILRVLNIGTIDNSPSGRLIFTVFSAFAEFERDLIVSRTQEGKAWAKANNPNFHDGMPRKYDQEQINFAWKLHTQDHMSYSEISKKLGMSKATIYRRFRELKQNKKATDSTTADDSGRVYC
SIO_010081: E6A57_RS10120
subclass of: SO_0000673
so part of: E6A57_RS10120
location: complement(8322..8948)
location: region:8322-8948:-1
so has part: feature:8322-8948:-1:exon

WP_158182234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8322-8948:-1:exon

E6A57_RS10125
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10125
old locus tag: E6A57_10160
so part of: sequence
location: complement(10021..10869)
location: region:10021-10869:-1
so has part: feature:10021-10869:-1:exon
subclass of: SO_0000010

69824375
type: Gene
SIO_000068: ncbigene

position:10021:-1
position: 10021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10869:-1
position: 10869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10021-10869:-1:exon

E6A57_RS10125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10125
old locus tag: E6A57_10160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012212312.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MTIGELLKEYRQKKGLTQKQFADGIVSTSYYSKVEKDEHRITVEDLIAILEHNNIAMWTFFRRLSLKGDFQHEYIAKLENDVLDAYYHSNKKKIEEIRQEVDSSTVPNKEEYLLLIDGWLENLKTKTEEPNLEVRNALKDKVFNIPDVTKEKLNLFCNFMEFYDIESNVMITKNAINKFIDSNDTESQEVLLAIMDNLLYLSIKENNYNYVDYIISNAEKLPVKPQFYFYQSVISFYKHLTNYHFNGNQEDIDACRAIIKNMKLTGMKSYGTELEEFLNDHI
SIO_010081: E6A57_RS10125
subclass of: SO_0000673
so part of: E6A57_RS10125
location: complement(10021..10869)
location: region:10021-10869:-1
so has part: feature:10021-10869:-1:exon

WP_118027232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10021-10869:-1:exon

E6A57_RS10130
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10130
old locus tag: E6A57_10165
so part of: sequence
location: 10966..12240
location: region:10966-12240:1
so has part: feature:10966-12240:1:exon
subclass of: SO_0000010

69824376
type: Gene
SIO_000068: ncbigene

position:10966:1
position: 10966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12240:1
position: 12240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10966-12240:1:exon

E6A57_RS10130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10130
old locus tag: E6A57_10165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004896296.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MNVFLKNKDYRRFSIASFLSGTGDVLFYLAFMTYASKLHNYSLALSLIAISESIPRLFEIFSGYLADRTRNKFKNIFLMAVVRFILYAIVGFLFVAKVSDWNLVIAVVVINFFSDTFGSYSSGLVAPLVADIVGKKDFGEAEGFTSGVSEIINMVAQFVGSGLLLFMSYSNLAFVNAFTFLAAGLLYASVGLKHKKDGQSLEPKEVNEQKFFATMKSSFTQAKKAHGLLTIMVIVGLLNGVLGAMSALIPIVMAGHKSTMLIGNYSFTMAVIGVLVSCGAALGSMFGQQLFRNVSAFTMTIIAGALSFLTTLSTLSAHIYAVLPFFFLLAATASISSIKLTQWLVNTVEHKILASTVGLLNTFAMASSPVMTTIFTTVSGMSDVRYALILLLVVEATVFFVTIKMSVKVKKAEAEDKSAAVVSE
SIO_010081: E6A57_RS10130
subclass of: SO_0000673
so part of: E6A57_RS10130
location: 10966..12240
location: region:10966-12240:1
so has part: feature:10966-12240:1:exon

WP_158182235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10966-12240:1:exon

E6A57_RS10135
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10135
old locus tag: E6A57_10170
so part of: sequence
location: complement(12360..12824)
location: region:12360-12824:-1
so has part: feature:12360-12824:-1:exon
subclass of: SO_0000010

69824377
type: Gene
SIO_000068: ncbigene

position:12360:-1
position: 12360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12824:-1
position: 12824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12360-12824:-1:exon

E6A57_RS10135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10135
old locus tag: E6A57_10170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013085590.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIVDNSERKNRLITYLFNYAFDNDIGYVFYKTNPRYPSLAWKWKREIAINMNWHNQDEVPFTIGHEIGHVMLGGPNTKQLYCIAYGTQIEEEKDADIYSLHLLYKYSCAQEDNFYDPLSFVKAYGIPNRMIGEAYKMFAEEEGYDAPDLMMENY
SIO_010081: E6A57_RS10135
subclass of: SO_0000673
so part of: E6A57_RS10135
location: complement(12360..12824)
location: region:12360-12824:-1
so has part: feature:12360-12824:-1:exon

WP_158182236.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12360-12824:-1:exon

E6A57_RS10140
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10140
old locus tag: E6A57_10175
so part of: sequence
location: complement(12805..13161)
location: region:12805-13161:-1
so has part: feature:12805-13161:-1:exon
subclass of: SO_0000010

69824378
type: Gene
SIO_000068: ncbigene

position:12805:-1
position: 12805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13161:-1
position: 13161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12805-13161:-1:exon

E6A57_RS10140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10140
old locus tag: E6A57_10175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005729771.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MIEFERTKELAKKNKLTLLEVNDKAGLGKRTIYNWKDRKPGSLALSAVAKVLHTSTDYLSGRTDDPNPHQKETVALDHEVPYSYHGYHVPEEYLNMVRELMEKDIRERRARKNDRGQQ
SIO_010081: E6A57_RS10140
subclass of: SO_0000673
so part of: E6A57_RS10140
location: complement(12805..13161)
location: region:12805-13161:-1
so has part: feature:12805-13161:-1:exon

WP_087236276.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12805-13161:-1:exon

E6A57_RS10145
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10145
old locus tag: E6A57_10180
so part of: sequence
location: 13479..13793
location: region:13479-13793:1
so has part: feature:13479-13793:1:exon
subclass of: SO_0000010

69824379
type: Gene
SIO_000068: ncbigene

position:13479:1
position: 13479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13793:1
position: 13793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13479-13793:1:exon

E6A57_RS10145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10145
old locus tag: E6A57_10180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007127102.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helveticin
translation: MDIHDYVELTTLALWFISIIGIGILSRVHFKNKRLEQFRITADDLMKNYVGLYNKESLASGQKINRIVNAVVDGLEAKGFKVEDQDVKDIFAKVAKIINENSSK
SIO_010081: E6A57_RS10145
subclass of: SO_0000673
so part of: E6A57_RS10145
location: 13479..13793
location: region:13479-13793:1
so has part: feature:13479-13793:1:exon

WP_158182237.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13479-13793:1:exon

E6A57_RS10150
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10150
old locus tag: E6A57_10185
so part of: sequence
location: 13824..14762
location: region:13824-14762:1
so has part: feature:13824-14762:1:exon
subclass of: SO_0000010

69824380
type: Gene
SIO_000068: ncbigene

position:13824:1
position: 13824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14762:1
position: 14762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13824-14762:1:exon

E6A57_RS10150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10150
old locus tag: E6A57_10185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008472480.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helveticin J family class III bacteriocin
translation: MRQAFNISASHTADLNTGYMAVAQKGNVGSKYIYAEQLRNDQHEIHVLRGYAGNVTTPVVTMYGSAGGHTQTWEYSGRSGKWFVGTKPGPKWDKQIARVDINPLGKVFYSNTDLPRLAYLNRAGNYNFAGTELDRAEAAVSPDYSKFLLATVDKSGNGYFTIYDNNVINDQLDSVEYSNGYVNLDGVSYLESFMVPNFVGVVTSIQGYDLDNAGNIYVSSQLAPDTLGGHYHKKNIYKIPTFARTDTDNWLQINLTDNAGPINIYGQGMHTELEGIQILNENHGYLTVAYHKTVNGKNKTVSNKIYEVSWSE
SIO_010081: E6A57_RS10150
subclass of: SO_0000673
so part of: E6A57_RS10150
location: 13824..14762
location: region:13824-14762:1
so has part: feature:13824-14762:1:exon

WP_158182238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13824-14762:1:exon

E6A57_RS10155
type: Gene
subclass of: SO_0000704
RO_0002162: 47770
locus tag: E6A57_RS10155
old locus tag: E6A57_10190
so part of: sequence
location: 14870..16078
location: region:14870-16078:1
so has part: feature:14870-16078:1:exon
subclass of: SO_0000010

69824381
type: Gene
SIO_000068: ncbigene

position:14870:1
position: 14870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16078:1
position: 16078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14870-16078:1:exon

E6A57_RS10155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 47770
locus tag: E6A57_RS10155
old locus tag: E6A57_10190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003628394.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SLAP domain-containing protein
translation: MKKNKFILASVATLMAVSPMLSFSSQAHTVQAADTNITNKMIMHTAVAYDKDGNSTGVKYNAFSYAKLVANPVKIGDGIYYKVADKDQYLKATNIDGVTRRITHNTYIYVTSTRRTSYQNRWKLYKGQTITTYGGSYRFKNGKHYFRVGGPAKQYVKSYNLGPVIKANTTMASGSNNTSSNTTTNKPTDNNTQPVGKDETTVTVNDSLGTPIVTFNQNGNVVQVRNAKNGEKFTVDYLEKGSRADKVAGYIGQFGGDQAIYRIKGTNNWLYSMGVKPASKLQVHNYNLEQTSVIKFTQTTDLYNADGSLQNIRITKNSEWWRVDKLLYIWVPSENKAEKFYHLAPDSHWKDVLRLSSNGQYVNDHMPIKDAYVKASDVQFIENSVKLTPSNTTAEAEATAKK
SIO_010081: E6A57_RS10155
subclass of: SO_0000673
so part of: E6A57_RS10155
location: 14870..16078
location: region:14870-16078:1
so has part: feature:14870-16078:1:exon

WP_158182239.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14870-16078:1:exon