Candidatus Ishikawaella capsulata Mpkobe plasmid pAst, complete sequence.
Candidatus Ishikawaella capsulata Mpkobe
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Candidatus Ishikawaella.
Reductive evolution of bacterial genome in insect gut environment
Submitted (12-SEP-2008) Contact:Naruo Nikoh The Open University of Japan; 2-11 Wakaba, Mihama, Chiba, Chiba 261-8586, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP010873.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 01:57:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 675\nCDSs (total) :: 626\nGenes (coding) :: 601\nCDSs (with protein) :: 601\nGenes (RNA) :: 49\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 37\nncRNAs :: 3\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 10 of 25\nPseudo Genes (incomplete) :: 15 of 25\nPseudo Genes (internal stop) :: 5 of 25\nPseudo Genes (multiple problems) :: 4 of 25\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007886110.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_017167677.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002209416.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012989335.1
bifunctional succinylornithine transaminase/acetylornithine transaminase
COORDINATES: protein motif:HMM:NF016822.2
COORDINATES: similar to AA sequence:RefSeq:WP_008805093.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006527 - arginine catabolic process [Evidence IEA]
succinylglutamate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_002903055.1
GO:0009015 - N-succinylarginine dihydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014606080.1