Pantoea eucrina strain XL123 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea.
Submitted (13-SEP-2021) College of Resources and Environmental Sciences, Nanjing Agricultural University, Weigang1#, Nanjing, Jiangsu 210095, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP083449.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. March-2019\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 120.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 07:05:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,634\nCDSs (total) :: 3,527\nGenes (coding) :: 3,463\nCDSs (with protein) :: 3,463\nGenes (RNA) :: 107\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 80\nncRNAs :: 5\nPseudo Genes (total) :: 64\nCDSs (without protein) :: 64\nPseudo Genes (ambiguous residues) :: 0 of 64\nPseudo Genes (frameshifted) :: 28 of 64\nPseudo Genes (incomplete) :: 32 of 64\nPseudo Genes (internal stop) :: 15 of 64\nPseudo Genes (multiple problems) :: 10 of 64\nPseudo Genes (short protein) :: 1 of 64\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:YP_005226526.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003851605.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036386.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF037421.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558267.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019953147.1
COORDINATES: similar to AA sequence:RefSeq:WP_013027929.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013027304.1
GO:0071468 - cellular response to acidic pH [Evidence IEA]
biofilm development regulator YmgB/AriR family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007854457.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010246887.1
biofilm/acid-resistance regulator YmgB/AriR
COORDINATES: similar to AA sequence:RefSeq:WP_017345770.1
COORDINATES: similar to AA sequence:RefSeq:WP_013511954.1
COORDINATES: similar to AA sequence:RefSeq:WP_013357057.1
COORDINATES: similar to AA sequence:RefSeq:WP_002553823.1
COORDINATES: similar to AA sequence:RefSeq:WP_014606918.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004388372.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_312248.2
fructoselysine/psicoselysine transporter FrlA
COORDINATES: similar to AA sequence:RefSeq:NP_417830.4
COORDINATES: similar to AA sequence:RefSeq:WP_001645852.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002436414.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636355.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013512027.1
GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014672.2
COORDINATES: similar to AA sequence:RefSeq:WP_008804811.1
COORDINATES: similar to AA sequence:RefSeq:WP_011092231.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119118.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0071705 - nitrogen compound transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017845576.1
COORDINATES: similar to AA sequence:RefSeq:WP_003504272.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020071586.1
COORDINATES: similar to AA sequence:RefSeq:WP_019436500.1
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010670320.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802324.1
COORDINATES: similar to AA sequence:RefSeq:WP_019105911.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
ABC transporter six-transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014542857.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926804.1
GO:0047605 - acetolactate decarboxylase activity [Evidence IEA]
GO:0045151 - acetoin biosynthetic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013511978.1
GO:0003984 - acetolactate synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0034077 - butanediol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001355308.1
PhoPQ-activated protein PqaA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013512050.1
sensor domain-containing phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_003850618.1
COORDINATES: similar to AA sequence:RefSeq:WP_014831390.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926830.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_416083.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_416082.1
type II toxin-antitoxin system antitoxin RelB
COORDINATES: similar to AA sequence:RefSeq:NP_416081.1
type II toxin-antitoxin system mRNA interferase RelE
COORDINATES: similar to AA sequence:RefSeq:WP_002437424.1
COORDINATES: similar to AA sequence:RefSeq:WP_006808844.1
pyrroloquinoline quinone-dependent dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008884810.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802217.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_012304696.1
HpcH/HpaI aldolase/citrate lyase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014656807.1
COORDINATES: similar to AA sequence:RefSeq:WP_004235938.1
COORDINATES: similar to AA sequence:RefSeq:NP_309376.1
phosphoribosyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013360020.1
COORDINATES: similar to AA sequence:RefSeq:WP_005975055.1
COORDINATES: similar to AA sequence:RefSeq:WP_002209075.1
COORDINATES: similar to AA sequence:RefSeq:WP_004245607.1
tellurite resistance TerB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012304695.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
TerC/Alx family metal homeostasis membrane protein
COORDINATES: similar to AA sequence:RefSeq:NP_309382.1
COORDINATES: similar to AA sequence:RefSeq:NP_309383.1
COORDINATES: similar to AA sequence:RefSeq:WP_013360013.1
COORDINATES: protein motif:HMM:NF024803.2
COORDINATES: similar to AA sequence:RefSeq:WP_013512532.1
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_416521.2
YoeB-YefM toxin-antitoxin system antitoxin YefM
COORDINATES: similar to AA sequence:RefSeq:NP_707909.1
COORDINATES: similar to AA sequence:RefSeq:WP_012443111.1
COORDINATES: similar to AA sequence:RefSeq:WP_013024233.1
COORDINATES: similar to AA sequence:RefSeq:YP_005225625.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
sucrose-specific PTS transporter subunit IIBC
COORDINATES: similar to AA sequence:RefSeq:WP_010256926.1
GO:0004564 - beta-fructofuranosidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013512536.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010281712.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020317119.1
type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
COORDINATES: similar to AA sequence:RefSeq:NP_490541.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011147726.1
COORDINATES: similar to AA sequence:RefSeq:WP_013025800.1
COORDINATES: similar to AA sequence:RefSeq:WP_013511964.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0051119 - sugar transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014332944.1
COORDINATES: similar to AA sequence:RefSeq:WP_013023966.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004935508.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612230.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014344450.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612175.1
COORDINATES: similar to AA sequence:RefSeq:WP_019105435.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019105436.1
COORDINATES: protein motif:HMM:NF014376.2
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000457592.1
GO:0003684 - damaged DNA binding [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
translesion error-prone DNA polymerase V subunit UmuC
COORDINATES: similar to AA sequence:RefSeq:WP_010252136.1
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: similar to AA sequence:RefSeq:WP_010260381.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010259082.1
COORDINATES: similar to AA sequence:RefSeq:WP_015697046.1
COORDINATES: similar to AA sequence:RefSeq:WP_013204490.1
COORDINATES: similar to AA sequence:RefSeq:WP_014229932.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003848389.1
COORDINATES: similar to AA sequence:RefSeq:WP_010259089.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014831004.1
COORDINATES: similar to AA sequence:RefSeq:WP_009586489.1
COORDINATES: similar to AA sequence:RefSeq:WP_010671918.1
glutathione-independent formaldehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:YP_005226527.1