Acinetobacter calcoaceticus strain CA16 plasmid pCA16, complete sequence.
type: Entry
definition: Acinetobacter calcoaceticus strain CA16 plasmid pCA16, complete sequence.
sequence version: NZ_CP020001.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP020001.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN06197019
keyword: RefSeq
source: Acinetobacter calcoaceticus
organism: Acinetobacter calcoaceticus
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP020001.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Mauve v. 2.4.0; Seqman Pro v. Lasergene\n DNASTAR\nGenome Coverage :: 100x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 04:57:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,934\nCDSs (total) :: 3,847\nGenes (coding) :: 3,790\nCDSs (with protein) :: 3,790\nGenes (RNA) :: 87\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 65\nncRNAs :: 4\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 30 of 57\nPseudo Genes (incomplete) :: 32 of 57\nPseudo Genes (internal stop) :: 12 of 57\nPseudo Genes (multiple problems) :: 15 of 57\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5920
topology: circular
so has quality: SO_0000988
location: 1..5920
location: region:1-5920:1
RO_0002162: 471

NZ_CP020001
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN06197019
type: BioSample
SIO_000068: biosample

1
title: Sequencing and Complete Genome Assembly of Acinetobacter calcoaceticus CA16
author: Ho, M.T.
author: Yuan, Z.-C.
author: Weselowski, B.
journal: Unpublished

2
title: Direct Submission
author: Ho, M.T.
author: Yuan, Z.-C.
author: Weselowski, B.
journal: Submitted (03-MAR-2017) London Research and Development Centre, Agriculture and Agri-Food Canada, 1391 Sandford Street, London, Ontario N5V 4T3, Canada

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5920:1
position: 5920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5920:1:source
so part of: sequence
organism: Acinetobacter calcoaceticus
mol type: genomic DNA
strain: CA16
isolation source: Canola Roots
plasmid: pCA16
country: Canada: London, Ontario
collection date: 2015-07-30

471
type: Taxonomy
SIO_000068: taxonomy

BUM88_RS19810
type: Gene
subclass of: SO_0000704
RO_0002162: 471
locus tag: BUM88_RS19810
old locus tag: BUM88_19810
so part of: sequence
location: complement(join(5654..5920,1..348))
location: region:1-5920:-1
so has part: feature:1-348:-1:exon
so has part: feature:5654-5920:-1:exon
subclass of: SO_0000010

47002682
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5920:-1
position: 5920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-348:-1:exon

position:348:-1
position: 348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5654-5920:-1:exon

position:5654:-1
position: 5654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BUM88_RS19810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 471
locus tag: BUM88_RS19810
old locus tag: BUM88_19810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017725774.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTVRIYVRASTKDQDAERALSDLILFANTIESAQVQYIENHSGTKLERPQLNKLLNESEQGDTLLVESVDRLSRLTQKDFEVLKQRIKDKGLKLVVADLPTTHQTIGTSDDITGSILNLINNMLIDLLATMARLDNDKRKERIKQGLERSGYVPTGRKANTSKHERIKELLKLQSMTKEEVAKAVSVGIATVYRVAKELKDQEI
SIO_010081: BUM88_RS19810
subclass of: SO_0000673
so part of: BUM88_RS19810
location: complement(join(5654..5920,1..348))
location: region:1-5920:-1
so has part: feature:1-348:-1:exon
so has part: feature:5654-5920:-1:exon

WP_213033789.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-348:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5654-5920:-1:exon

BUM88_RS19975
type: Gene
subclass of: SO_0000704
RO_0002162: 471
locus tag: BUM88_RS19975
so part of: sequence
location: 651..815
location: region:651-815:1
so has part: feature:651-815:1:exon
subclass of: SO_0000010

47002707
type: Gene
SIO_000068: ncbigene

position:651:1
position: 651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:815:1
position: 815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:651-815:1:exon

BUM88_RS19975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 471
locus tag: BUM88_RS19975
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSFTVFLMMFFEVIKVSSTIVLSGGNNGLLMLCILQTLVIGILVIKLTVLNHGD
SIO_010081: BUM88_RS19975
subclass of: SO_0000673
so part of: BUM88_RS19975
location: 651..815
location: region:651-815:1
so has part: feature:651-815:1:exon

WP_155120935.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:651-815:1:exon

BUM88_RS19815
type: Gene
subclass of: SO_0000704
RO_0002162: 471
locus tag: BUM88_RS19815
old locus tag: BUM88_19815
so part of: sequence
location: 818..1492
location: region:818-1492:1
so has part: feature:818-1492:1:exon
subclass of: SO_0000010

47002683
type: Gene
SIO_000068: ncbigene

position:818:1
position: 818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1492:1
position: 1492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:818-1492:1:exon

BUM88_RS19815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 471
locus tag: BUM88_RS19815
old locus tag: BUM88_19815
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MREFGSIPYEFISSERNNFPAGRTTGTCIAAIKCLLVLGLRCDFYSKEVSLSLGELEEYTGCSKPMVIKGINHLVDEGIITKLNQGKTNVKGKYRLNFPSQKFTQVPYSIFLKLREFPNKGIVALTALKAYLVLLKLRINKTARAEITYKGFSRYHINPRYLNKALEVLISSHYISISKQYNFDALSGYTKSSNQYFLYYFSLTVYKDYEDDSDRVIAWSSEVL
SIO_010081: BUM88_RS19815
subclass of: SO_0000673
so part of: BUM88_RS19815
location: 818..1492
location: region:818-1492:1
so has part: feature:818-1492:1:exon

WP_155120936.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:818-1492:1:exon

BUM88_RS19820
type: Gene
subclass of: SO_0000704
RO_0002162: 471
locus tag: BUM88_RS19820
old locus tag: BUM88_19820
so part of: sequence
location: 1780..2190
location: region:1780-2190:1
so has part: feature:1780-2190:1:exon
subclass of: SO_0000010

47002684
type: Gene
SIO_000068: ncbigene

position:1780:1
position: 1780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2190:1
position: 2190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1780-2190:1:exon

BUM88_RS19820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 471
locus tag: BUM88_RS19820
old locus tag: BUM88_19820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004884388.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication DNA-binding protein
translation: MSNISINQASKLFKVSRNTIYARIKKGEITKNSDGTVSVQDIMRLFGNKADKKATEQAVTELLNSTKNNEQLIEQPQSNNEQLLQQKIEQLKVQVEQLEKQLEYVKANEAWLKQQLDQKLIEHKESKKGLLSKLFG
SIO_010081: BUM88_RS19820
subclass of: SO_0000673
so part of: BUM88_RS19820
location: 1780..2190
location: region:1780-2190:1
so has part: feature:1780-2190:1:exon

WP_080028378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1780-2190:1:exon

BUM88_RS19825
type: Gene
subclass of: SO_0000704
RO_0002162: 471
locus tag: BUM88_RS19825
old locus tag: BUM88_19825
so part of: sequence
location: complement(2232..2555)
location: region:2232-2555:-1
so has part: feature:2232-2555:-1:exon
subclass of: SO_0000010

47002685
type: Gene
SIO_000068: ncbigene

position:2232:-1
position: 2232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2555:-1
position: 2555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2232-2555:-1:exon

BUM88_RS19825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 471
locus tag: BUM88_RS19825
old locus tag: BUM88_19825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004884385.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIHVPKVPSVNTHKASILYLLLKGHRIKNKEMWGHIDTGYSASRISELRSDLWLIDDISLREVTKEKKTVVVKQYFIKSIHLSEILRDQNVLDFITKYEAVHMKKAG
SIO_010081: BUM88_RS19825
subclass of: SO_0000673
so part of: BUM88_RS19825
location: complement(2232..2555)
location: region:2232-2555:-1
so has part: feature:2232-2555:-1:exon

WP_080028379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2232-2555:-1:exon

BUM88_RS19830
type: Gene
subclass of: SO_0000704
RO_0002162: 471
gene: repM
locus tag: BUM88_RS19830
old locus tag: BUM88_19830
so part of: sequence
location: 3278..4225
location: region:3278-4225:1
so has part: feature:3278-4225:1:exon
subclass of: SO_0000010

47002686
type: Gene
SIO_000068: ncbigene

position:3278:1
position: 3278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4225:1
position: 4225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3278-4225:1:exon

BUM88_RS19830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 471
gene: repM
locus tag: BUM88_RS19830
old locus tag: BUM88_19830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004884394.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MGNKLVVKTNRLIEALQTLSLAETRLLQLAIVNARENGKGLDSSVPLSISAVEYAKEFNVSNQAGYIALKSAEETLFERRFTIIDVDKNPIKSRWVQDVKYIQEEGRIEITLSRVVAKEITKIDGLKDFFTSYLLEKTSGLNSVYAIRLYELLIQWKTVKKTPVFEIENFRNQLGLGVNEYKQMNNFKARVLEVAIEQINKNTDITVKYEQHKKGVKINGFSFSFKFKEDKKQVEKRGVNSTLVTSLTPKQIHLFSRQIAKAVVENRSPVFTSLSIFAPAGTGEVEFAERIARDLENEHTAKRYYQALLDLGFKP
SIO_010081: BUM88_RS19830
subclass of: SO_0000673
so part of: BUM88_RS19830
location: 3278..4225
location: region:3278-4225:1
so has part: feature:3278-4225:1:exon

WP_080028380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3278-4225:1:exon

BUM88_RS19835
type: Gene
subclass of: SO_0000704
RO_0002162: 471
locus tag: BUM88_RS19835
old locus tag: BUM88_19835
so part of: sequence
location: complement(4617..5237)
location: region:4617-5237:-1
so has part: feature:4617-5237:-1:exon
subclass of: SO_0000010

47002687
type: Gene
SIO_000068: ncbigene

position:4617:-1
position: 4617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5237:-1
position: 5237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4617-5237:-1:exon

BUM88_RS19835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 471
locus tag: BUM88_RS19835
old locus tag: BUM88_19835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004884393.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPTIGIKMMMDGRRYEINPVHYDKIENLALYARDNMSYPCCFHFLSHIDDPETFKETKRNLIKEFERELKRQFKSSPQECPEVLVLYSIEFKYTTNKEVEGGTDAYDASRFDIPKTPFLHIHFYVIADCRRTHPNLFRDKAIASLNNLGGLRGGRYLLSKNNELYKKLKGEYFDDTFQRLLYVGKVEQKSPEIPFRKKFGTSKAPN
SIO_010081: BUM88_RS19835
subclass of: SO_0000673
so part of: BUM88_RS19835
location: complement(4617..5237)
location: region:4617-5237:-1
so has part: feature:4617-5237:-1:exon

WP_228147282.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4617-5237:-1:exon