Pantoea eucalypti strain LMG 24197 plasmid pEuc3, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea.
Pantoea eucalypti LMG 24197 Whole Genome Sequencing
Submitted (31-OCT-2019) School of Forest Protection, Nanjing Forestry University, Longpan Road 159, Nanjing, Jiangsu 210037, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP045723.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 1.7.11\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 508.94x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/13/2023 05:58:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,501\nCDSs (total) :: 4,384\nGenes (coding) :: 4,310\nCDSs (with protein) :: 4,310\nGenes (RNA) :: 117\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 79\nncRNAs :: 17\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 43 of 74\nPseudo Genes (incomplete) :: 52 of 74\nPseudo Genes (internal stop) :: 20 of 74\nPseudo Genes (multiple problems) :: 32 of 74\nPseudo Genes (short protein) :: 1 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Strains belonging to this species have been isolated from eucalyptus leaves showing symptoms of bacterial blight and die-back in Uruguay
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008927047.1
GO:0003684 - damaged DNA binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
translesion error-prone DNA polymerase V subunit UmuC
COORDINATES: similar to AA sequence:RefSeq:WP_008927048.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008927050.1
COORDINATES: similar to AA sequence:RefSeq:WP_000848366.1
Ref family recombination enhancement nuclease
COORDINATES: similar to AA sequence:RefSeq:WP_008927055.1
COORDINATES: similar to AA sequence:RefSeq:WP_000121260.1
COORDINATES: similar to AA sequence:RefSeq:WP_008927057.1
COORDINATES: similar to AA sequence:RefSeq:WP_001557712.1
COORDINATES: similar to AA sequence:RefSeq:WP_008927060.1
COORDINATES: similar to AA sequence:RefSeq:WP_008927061.1
COORDINATES: similar to AA sequence:RefSeq:WP_008927062.1
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000660967.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Dam family site-specific DNA-(adenine-N6)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008927065.1
COORDINATES: similar to AA sequence:RefSeq:WP_008927066.1
COORDINATES: similar to AA sequence:RefSeq:WP_008927070.1
COORDINATES: similar to AA sequence:RefSeq:WP_008927073.1
COORDINATES: similar to AA sequence:RefSeq:WP_001033854.1
COORDINATES: similar to AA sequence:RefSeq:WP_008927075.1
COORDINATES: similar to AA sequence:RefSeq:WP_008927076.1
COORDINATES: similar to AA sequence:RefSeq:WP_000012433.1
COORDINATES: similar to AA sequence:RefSeq:WP_000187854.1
COORDINATES: similar to AA sequence:RefSeq:WP_008927079.1
COORDINATES: similar to AA sequence:RefSeq:WP_001025047.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926978.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926979.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926981.1
COORDINATES: protein motif:HMM:NF014467.2
COORDINATES: similar to AA sequence:RefSeq:WP_000526264.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926986.1
COORDINATES: protein motif:HMM:NF037905.2
COORDINATES: similar to AA sequence:RefSeq:WP_008926989.1
COORDINATES: similar to AA sequence:RefSeq:WP_013574307.1
COORDINATES: similar to AA sequence:RefSeq:WP_008924516.1
GO:0007165 - signal transduction [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008926908.1
GO:0016740 - transferase activity [Evidence IEA]
Vat family streptogramin A O-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008926993.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926995.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926998.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926999.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008927000.1
COORDINATES: similar to AA sequence:RefSeq:WP_008927003.1
COORDINATES: protein motif:HMM:NF015102.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit alpha C-terminal domain-containing protein
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF022642.2
COORDINATES: protein motif:HMM:NF018148.2
COORDINATES: similar to AA sequence:RefSeq:WP_008927017.1
COORDINATES: similar to AA sequence:RefSeq:WP_008927019.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF001862.0
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000950454.1
COORDINATES: similar to AA sequence:RefSeq:WP_010671422.1
COORDINATES: similar to AA sequence:RefSeq:WP_010671421.1
COORDINATES: similar to AA sequence:RefSeq:WP_000174562.1
COORDINATES: protein motif:HMM:NF026209.2
GO:0042742 - defense response to bacterium [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015964049.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926946.1
COORDINATES: similar to AA sequence:RefSeq:WP_013196199.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008806992.1