Pantoea eucalypti strain LMG 24197 plasmid pEuc2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea.
Pantoea eucalypti LMG 24197 Whole Genome Sequencing
Submitted (31-OCT-2019) School of Forest Protection, Nanjing Forestry University, Longpan Road 159, Nanjing, Jiangsu 210037, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP045722.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 1.7.11\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 508.94x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/13/2023 05:58:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,501\nCDSs (total) :: 4,384\nGenes (coding) :: 4,310\nCDSs (with protein) :: 4,310\nGenes (RNA) :: 117\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 79\nncRNAs :: 17\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 43 of 74\nPseudo Genes (incomplete) :: 52 of 74\nPseudo Genes (internal stop) :: 20 of 74\nPseudo Genes (multiple problems) :: 32 of 74\nPseudo Genes (short protein) :: 1 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Strains belonging to this species have been isolated from eucalyptus leaves showing symptoms of bacterial blight and die-back in Uruguay
COORDINATES: similar to AA sequence:RefSeq:YP_005225625.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
sucrose-specific PTS transporter subunit IIBC
COORDINATES: similar to AA sequence:RefSeq:WP_010256926.1
GO:0004564 - beta-fructofuranosidase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003850633.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010256919.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926793.1
GO:0046417 - chorismate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008926794.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850629.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850628.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006118233.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926796.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003850618.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850617.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850614.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010256878.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850609.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003850608.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003850604.1
COORDINATES: similar to AA sequence:RefSeq:NP_707909.1
COORDINATES: similar to AA sequence:RefSeq:NP_416521.2
YoeB-YefM toxin-antitoxin system antitoxin YefM
COORDINATES: similar to AA sequence:RefSeq:WP_013025938.1
COORDINATES: similar to AA sequence:RefSeq:WP_013356614.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013356613.1
GO:0019152 - acetoin dehydrogenase activity [Evidence IEA]
GO:0045150 - acetoin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003850593.1
GO:0003984 - acetolactate synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0034077 - butanediol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008926804.1
GO:0047605 - acetolactate decarboxylase activity [Evidence IEA]
GO:0045151 - acetoin biosynthetic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008926805.1
COORDINATES: similar to AA sequence:RefSeq:WP_013356609.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850585.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850584.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003850582.1
COORDINATES: similar to AA sequence:RefSeq:WP_013096847.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003850580.1
COORDINATES: similar to AA sequence:RefSeq:WP_008786513.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003850576.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010671991.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012698.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008926813.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850572.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926815.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850570.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850569.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926818.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010671903.1
COORDINATES: similar to AA sequence:RefSeq:WP_020454993.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_003850564.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850563.1
COORDINATES: similar to AA sequence:RefSeq:WP_013356564.1
GO:0008483 - transaminase activity [Evidence IEA]
UDP-4-amino-4-deoxy-L-arabinose aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003850561.1
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase
COORDINATES: similar to AA sequence:RefSeq:WP_009093173.1
GO:0016742 - hydroxymethyl-, formyl- and related transferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA
COORDINATES: similar to AA sequence:RefSeq:WP_010671909.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase
COORDINATES: similar to AA sequence:RefSeq:WP_003850558.1
GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO:0016763 - pentosyltransferase activity [Evidence IEA]
GO:0006493 - protein O-linked glycosylation [Evidence IEA]
lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_010671911.1
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE
COORDINATES: similar to AA sequence:RefSeq:WP_013356558.1
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF
COORDINATES: similar to AA sequence:RefSeq:WP_008926821.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850554.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008900000.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008900002.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF020442.2
COORDINATES: similar to AA sequence:RefSeq:WP_015700094.1
sulfonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010257098.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003850550.1
GO:0008726 - alkanesulfonate monooxygenase activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
FMNH2-dependent alkanesulfonate monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_008926826.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850548.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_014593915.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850546.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926829.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926830.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010257075.1
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
Fe(2+) transporter permease subunit FeoB
COORDINATES: similar to AA sequence:RefSeq:WP_008926832.1
GO:0046914 - transition metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003850539.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257065.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850534.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257059.1
COORDINATES: similar to AA sequence:RefSeq:WP_013025800.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850529.1
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_003850526.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850525.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010257042.1
COORDINATES: similar to AA sequence:RefSeq:WP_014070071.1
GO:0003674 - molecular_function [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
type VI secretion system tube protein TssD
COORDINATES: similar to AA sequence:RefSeq:WP_014830982.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008926843.1
COORDINATES: similar to AA sequence:RefSeq:WP_017799524.1
COORDINATES: similar to AA sequence:RefSeq:WP_013356518.1
COORDINATES: similar to AA sequence:RefSeq:WP_014605940.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850694.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257016.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926773.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926774.1
COORDINATES: similar to AA sequence:RefSeq:NP_308490.1
COORDINATES: similar to AA sequence:RefSeq:WP_010671944.1
COORDINATES: similar to AA sequence:RefSeq:WP_010671945.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850677.1
COORDINATES: similar to AA sequence:RefSeq:WP_010671947.1
COORDINATES: similar to AA sequence:RefSeq:WP_010671948.1
COORDINATES: similar to AA sequence:RefSeq:WP_010671949.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926782.1
COORDINATES: similar to AA sequence:RefSeq:WP_010671950.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926784.1
COORDINATES: similar to AA sequence:RefSeq:WP_017494021.1
COORDINATES: similar to AA sequence:RefSeq:WP_010256962.1
COORDINATES: similar to AA sequence:RefSeq:WP_010671953.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926786.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850653.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850652.1
GGDEF domain-containing phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_020885163.1
COORDINATES: similar to AA sequence:RefSeq:WP_009093254.1
COORDINATES: similar to AA sequence:RefSeq:WP_009093253.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_009093252.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850642.1
COORDINATES: similar to AA sequence:RefSeq:WP_008926789.1
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013024233.1