Acinetobacter baumannii strain K09-14 plasmid pK09-14, complete sequence.
type: Entry
definition: Acinetobacter baumannii strain K09-14 plasmid pK09-14, complete sequence.
sequence version: NZ_CP043954.1
sequence date: 2022-11-30
sequence: sequence
division: CON
label: NZ_CP043954.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12769618
keyword: RefSeq
source: Acinetobacter baumannii
organism: Acinetobacter baumannii
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP043954.1.\nBacteria and source DNA available from LKCMedicine Microbial\nRepository, Lee Kong Chian School of Medicine, Nanyang\nTechnological University, 11 Mandalay Road, Singapore 308232.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: UniCycler v. Galaxy version 0.4.6.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 568.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/30/2022 06:36:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,732\nCDSs (total) :: 3,638\nGenes (coding) :: 3,597\nCDSs (with protein) :: 3,597\nGenes (RNA) :: 94\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 4\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 19 of 41\nPseudo Genes (incomplete) :: 23 of 41\nPseudo Genes (internal stop) :: 8 of 41\nPseudo Genes (multiple problems) :: 9 of 41\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 7791
topology: circular
so has quality: SO_0000988
location: 1..7791
location: region:1-7791:1
RO_0002162: 470

NZ_CP043954
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12769618
type: BioSample
SIO_000068: biosample

1
title: Novel environmental carbapenem-resistant Acinetobacter baumannii harbouring blaOXA-72 encoding plasmid
author: Wee, S.K.
author: Sivalingam, S.P.
author: Mustaffa, S.B.
author: Loh, C.P.
author: Yap, E.P.H.
journal: Unpublished

2
title: Direct Submission
author: Wee, S.K.
author: Sivalingam, S.P.
author: Mustaffa, S.B.
author: Loh, C.P.
author: Yap, E.P.H.
journal: Submitted (16-SEP-2019) Lee Kong Chian School of Medicine, Nanyang Technological University, 11 Mandalay Road, Singapore 308232, Singapore

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7791:1
position: 7791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7791:1:source
so part of: sequence
organism: Acinetobacter baumannii
mol type: genomic DNA
strain: K09-14
isolation source: soil
plasmid: pK09-14
country: Malaysia
lat lon: 2.500593 N 102.093880 E
collection date: 2017-12-10
collected by: Microbial Repository, NTU

470
type: Taxonomy
SIO_000068: taxonomy

F3P16_RS18750
type: Gene
subclass of: SO_0000704
RO_0002162: 470
locus tag: F3P16_RS18750
old locus tag: F3P16_18750
so part of: sequence
location: complement(41..232)
location: region:41-232:-1
so has part: feature:41-232:-1:exon
subclass of: SO_0000010

66399023
type: Gene
SIO_000068: ncbigene

position:41:-1
position: 41
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:232:-1
position: 232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41-232:-1:exon

F3P16_RS18750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 470
locus tag: F3P16_RS18750
old locus tag: F3P16_18750
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000032259.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKELVNLANIVPFPKSCGFCESKENVQLFAGLMLCSSCQENIRTTNPGMFTANNQIEKKAQD
SIO_010081: F3P16_RS18750
subclass of: SO_0000673
so part of: F3P16_RS18750
location: complement(41..232)
location: region:41-232:-1
so has part: feature:41-232:-1:exon

WP_032007734.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41-232:-1:exon

F3P16_RS18760
type: Gene
subclass of: SO_0000704
RO_0002162: 470
gene: repM
locus tag: F3P16_RS18760
old locus tag: F3P16_18760
so part of: sequence
location: 1374..2309
location: region:1374-2309:1
so has part: feature:1374-2309:1:exon
subclass of: SO_0000010

66399024
type: Gene
SIO_000068: ncbigene

position:1374:1
position: 1374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2309:1
position: 2309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1374-2309:1:exon

F3P16_RS18760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 470
gene: repM
locus tag: F3P16_RS18760
old locus tag: F3P16_18760
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005237873.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MPTSELIVKDNALINASYNLDTVEQRLILLAILQARETRTGIDANTRLRIHASDYMSRFNVNKHAAYKALKTAVTNLFGRQFSYQTIDEKTGKSKKVISRWVQNISYIDDAATLEVTFTMDVVPLITRLEKQFTSYQLKQVTQLTGKYAIRLYELLIAWREVGKTPIFEVSDFRSKLGLTSDDYPRLDTFKRRVLESAVKQINEHTDIIVKVEQHKEGRSISGFSFSFKQKRNPNKAIELKKDPNTLDIFSRITDAQRHLFANKLSKLPEMAKYSQGTESYQQFAIRIAEMLQDPAKFQELHPYLEKVGYR
SIO_010081: F3P16_RS18760
subclass of: SO_0000673
so part of: F3P16_RS18760
location: 1374..2309
location: region:1374-2309:1
so has part: feature:1374-2309:1:exon

WP_096641239.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1374-2309:1:exon

F3P16_RS18765
type: Gene
subclass of: SO_0000704
RO_0002162: 470
locus tag: F3P16_RS18765
old locus tag: F3P16_18765
so part of: sequence
location: 2378..2854
location: region:2378-2854:1
so has part: feature:2378-2854:1:exon
subclass of: SO_0000010

66399025
type: Gene
SIO_000068: ncbigene

position:2378:1
position: 2378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2854:1
position: 2854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2378-2854:1:exon

F3P16_RS18765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 470
locus tag: F3P16_RS18765
old locus tag: F3P16_18765
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017398013.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication DNA-binding protein
translation: MKALSVIELSKLYGMNRQSIYKRINKGDLSKTSDGKIDLSEAIRVFGEPSNKNNNVTTLQSTEVQKETEVDMLKQQVDILKKQLELAHEREVFQREQLEAKDNQIEAIQRLLEAPKTNMTTFTDQKPASDIATNPQPEHAEPEQPKKGWLSRFFLPNG
SIO_010081: F3P16_RS18765
subclass of: SO_0000673
so part of: F3P16_RS18765
location: 2378..2854
location: region:2378-2854:1
so has part: feature:2378-2854:1:exon

WP_171265043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2378-2854:1:exon

F3P16_RS18775
type: Gene
subclass of: SO_0000704
RO_0002162: 470
locus tag: F3P16_RS18775
old locus tag: F3P16_18775
so part of: sequence
location: 3216..3728
location: region:3216-3728:1
so has part: feature:3216-3728:1:exon
subclass of: SO_0000010

66399026
type: Gene
SIO_000068: ncbigene

position:3216:1
position: 3216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3728:1
position: 3728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3216-3728:1:exon

F3P16_RS18775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 470
locus tag: F3P16_RS18775
old locus tag: F3P16_18775
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004865560.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAVDKDRYKALYEYQKAQFDDERTRYSKLEDKAAKYLTFLTIIISAYILLVSKFINTSNNIYCLTYAIIIFFVILTFFSFCGAWFSIFKSLRLQEVKKMPSDGELIEFFESNELPSVYLGLAENYSEAIEWYRIKNHDKTTLMQQGYKEIFHTAIFFIISILLIFLTQVA
SIO_010081: F3P16_RS18775
subclass of: SO_0000673
so part of: F3P16_RS18775
location: 3216..3728
location: region:3216-3728:1
so has part: feature:3216-3728:1:exon

WP_032007735.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3216-3728:1:exon

F3P16_RS18930
type: Gene
subclass of: SO_0000704
RO_0002162: 470
locus tag: F3P16_RS18930
so part of: sequence
location: 3730..3885
location: region:3730-3885:1
so has part: feature:3730-3885:1:exon
subclass of: SO_0000010

66399048
type: Gene
SIO_000068: ncbigene

position:3730:1
position: 3730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3885:1
position: 3885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3730-3885:1:exon

F3P16_RS18930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 470
locus tag: F3P16_RS18930
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTVDDKSKPEKAPAQSQPKPERAVRPTKKPTLGFGLEDASGGGLRPSKNQK
SIO_010081: F3P16_RS18930
subclass of: SO_0000673
so part of: F3P16_RS18930
location: 3730..3885
location: region:3730-3885:1
so has part: feature:3730-3885:1:exon

WP_155767402.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3730-3885:1:exon

F3P16_RS18935
type: Gene
subclass of: SO_0000704
RO_0002162: 470
locus tag: F3P16_RS18935
so part of: sequence
location: 3940..4101
location: region:3940-4101:1
so has part: feature:3940-4101:1:exon
subclass of: SO_0000010

66399049
type: Gene
SIO_000068: ncbigene

position:3940:1
position: 3940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4101:1
position: 4101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3940-4101:1:exon

F3P16_RS18935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 470
locus tag: F3P16_RS18935
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKSSNNNQQNSGAQQSSAKPERAVKVSGPKLVGGALDGGSKEWFASLTSNKK
SIO_010081: F3P16_RS18935
subclass of: SO_0000673
so part of: F3P16_RS18935
location: 3940..4101
location: region:3940-4101:1
so has part: feature:3940-4101:1:exon

WP_155767404.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3940-4101:1:exon

F3P16_RS18780
type: Gene
subclass of: SO_0000704
RO_0002162: 470
locus tag: F3P16_RS18780
old locus tag: F3P16_18780
so part of: sequence
location: complement(4311..5369)
location: region:4311-5369:-1
so has part: feature:4311-5369:-1:exon
subclass of: SO_0000010

66399027
type: Gene
SIO_000068: ncbigene

position:4311:-1
position: 4311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5369:-1
position: 5369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4311-5369:-1:exon

F3P16_RS18780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 470
locus tag: F3P16_RS18780
old locus tag: F3P16_18780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015484794.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MAIYALWNNKGGVGKSYLTFQIAAEYAVTHPNKKVLVLDLCPQANSSSMLLGGIERGESHLDEIHSQASKKTISGYVESRILSPYVNPRSGANFYISPNQYNSQLPNNLYLVPGDEQLEIQASRVASAAMPGPTDAWRIVHTWISDLIEDVRVSLNTEDLTVFIDCNPSFSIYTELAMSAADRLLIPFSADGSSKRAVRAVLALIYGITRQPGQQQSEFHINSQRYRMSVPKIYMYIGNRLTQMNQSSATAFKTVVNEIGEEIYTAWTNNPNLFSIHPTGANPPNSRRAFRHMFQYEVNDANSASVVSGAEGIPISKLTAGNKQVLGKTVRVNQSQLDRQVPNIQALIHSIE
SIO_010081: F3P16_RS18780
subclass of: SO_0000673
so part of: F3P16_RS18780
location: complement(4311..5369)
location: region:4311-5369:-1
so has part: feature:4311-5369:-1:exon

WP_032007737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4311-5369:-1:exon

F3P16_RS18785
type: Gene
subclass of: SO_0000704
RO_0002162: 470
locus tag: F3P16_RS18785
old locus tag: F3P16_18785
so part of: sequence
location: complement(5504..5713)
location: region:5504-5713:-1
so has part: feature:5504-5713:-1:exon
subclass of: SO_0000010

66399028
type: Gene
SIO_000068: ncbigene

position:5504:-1
position: 5504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5713:-1
position: 5713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5504-5713:-1:exon

F3P16_RS18785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 470
locus tag: F3P16_RS18785
old locus tag: F3P16_18785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018680077.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNNKPLKNSTKLLVNLDKFIFLVNAADSLEEIEIIRDLCCEYFSHCKRPSYYIDIFDNAYWIKYYEIA
SIO_010081: F3P16_RS18785
subclass of: SO_0000673
so part of: F3P16_RS18785
location: complement(5504..5713)
location: region:5504-5713:-1
so has part: feature:5504-5713:-1:exon

WP_000069474.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5504-5713:-1:exon

F3P16_RS18790
type: Gene
subclass of: SO_0000704
RO_0002162: 470
locus tag: F3P16_RS18790
old locus tag: F3P16_18790
so part of: sequence
location: complement(5706..6008)
location: region:5706-6008:-1
so has part: feature:5706-6008:-1:exon
subclass of: SO_0000010

66399029
type: Gene
SIO_000068: ncbigene

position:5706:-1
position: 5706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6008:-1
position: 6008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5706-6008:-1:exon

F3P16_RS18790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 470
locus tag: F3P16_RS18790
old locus tag: F3P16_18790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001140617.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: XRE family transcriptional regulator
translation: MAKTLQELLASRSPESQARIQKMADELLLETQLHLIREELEISQKELAATLGIKQPSLSAIENRGHDLKISTMKKYVEAMGGKLRIDVELPTGKHIGFNV
SIO_010081: F3P16_RS18790
subclass of: SO_0000673
so part of: F3P16_RS18790
location: complement(5706..6008)
location: region:5706-6008:-1
so has part: feature:5706-6008:-1:exon

WP_001140621.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5706-6008:-1:exon

F3P16_RS18795
type: Gene
subclass of: SO_0000704
RO_0002162: 470
locus tag: F3P16_RS18795
old locus tag: F3P16_18795
so part of: sequence
location: complement(6001..6357)
location: region:6001-6357:-1
so has part: feature:6001-6357:-1:exon
subclass of: SO_0000010

66399030
type: Gene
SIO_000068: ncbigene

position:6001:-1
position: 6001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6357:-1
position: 6357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6001-6357:-1:exon

F3P16_RS18795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 470
locus tag: F3P16_RS18795
old locus tag: F3P16_18795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005194067.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MWTVITTDLFNEWLVQQDESTQEKVLAALVVLQQQGPSLGRPLVDTVYDSKFTNMKELRVQHRGKPLRAFFAFDPLRQAIVLCIGDKGGKKRFYKEMLDIADQQYELHLSTLGDQSNG
SIO_010081: F3P16_RS18795
subclass of: SO_0000673
so part of: F3P16_RS18795
location: complement(6001..6357)
location: region:6001-6357:-1
so has part: feature:6001-6357:-1:exon

WP_000269909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6001-6357:-1:exon

F3P16_RS18800
type: Gene
subclass of: SO_0000704
RO_0002162: 470
locus tag: F3P16_RS18800
old locus tag: F3P16_18800
so part of: sequence
location: 6961..7788
location: region:6961-7788:1
so has part: feature:6961-7788:1:exon
subclass of: SO_0000010

66399031
type: Gene
SIO_000068: ncbigene

position:6961:1
position: 6961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7788:1
position: 7788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6961-7788:1:exon

F3P16_RS18800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 470
locus tag: F3P16_RS18800
old locus tag: F3P16_18800
EC number: 3.5.2.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_057689930.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: OXA-24 family carbapenem-hydrolyzing class D beta-lactamase OXA-72
translation: MKKFILPIFSISILVSLSACSSIKTKSEDNFHISSQQHEKAIKSYFDEAQTQGVIIIKEGKNLSTYGNALARANKEYVPASTFKMLNALIGLENHKATTNEIFKWDGKKRTYPMWEKDMTLGEAMALSAVPVYQELARRTGLELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHNRLPFKLETQEEVKKMLLIKEVNGSKIYAKSGWGMDVTPQVGWLTGWVEQANGKKIPFSLNLEMKEGMSGSIRNEITYKSLENLGII
SIO_010081: F3P16_RS18800
subclass of: SO_0000673
so part of: F3P16_RS18800
location: 6961..7788
location: region:6961-7788:1
so has part: feature:6961-7788:1:exon

WP_000713530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6961-7788:1:exon