Acinetobacter baumannii strain K09-14 plasmid pK09-14, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.
Novel environmental carbapenem-resistant Acinetobacter baumannii harbouring blaOXA-72 encoding plasmid
Submitted (16-SEP-2019) Lee Kong Chian School of Medicine, Nanyang Technological University, 11 Mandalay Road, Singapore 308232, Singapore
REFSEQ INFORMATION: The reference sequence is identical to\nCP043954.1.\nBacteria and source DNA available from LKCMedicine Microbial\nRepository, Lee Kong Chian School of Medicine, Nanyang\nTechnological University, 11 Mandalay Road, Singapore 308232.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: UniCycler v. Galaxy version 0.4.6.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 568.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/30/2022 06:36:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,732\nCDSs (total) :: 3,638\nGenes (coding) :: 3,597\nCDSs (with protein) :: 3,597\nGenes (RNA) :: 94\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 4\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 19 of 41\nPseudo Genes (incomplete) :: 23 of 41\nPseudo Genes (internal stop) :: 8 of 41\nPseudo Genes (multiple problems) :: 9 of 41\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_000032259.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005237873.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017398013.1
COORDINATES: similar to AA sequence:RefSeq:WP_004865560.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015484794.1
COORDINATES: similar to AA sequence:RefSeq:WP_018680077.1
COORDINATES: similar to AA sequence:RefSeq:WP_001140617.1
COORDINATES: similar to AA sequence:RefSeq:WP_005194067.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_057689930.1
OXA-24 family carbapenem-hydrolyzing class D beta-lactamase OXA-72