Fusobacterium varium ATCC 27725 plasmid pFvar_27725, complete sequence.
Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium.
Complete Fusobacterium genomes using hybrid Minion sequencing
Submitted (17-MAR-2018) Biochemistry, Virginia Tech, 340 West Campus Drive, Blacksburg, VA 24061, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP028104.1.\nBacteria available from Daniel Slade, Virginia Tech.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2018\nAssembly Method :: Unicycler v. 0.4.3\nAssembly Name :: VT_Fvar_27725\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 27x\nSequencing Technology :: Illumina, MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 02:18:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,136\nCDSs (total) :: 3,053\nGenes (coding) :: 3,042\nCDSs (with protein) :: 3,042\nGenes (RNA) :: 83\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 3\nPseudo Genes (total) :: 11\nCDSs (without protein) :: 11\nPseudo Genes (ambiguous residues) :: 0 of 11\nPseudo Genes (frameshifted) :: 2 of 11\nPseudo Genes (incomplete) :: 8 of 11\nPseudo Genes (internal stop) :: 3 of 11\nPseudo Genes (multiple problems) :: 2 of 11\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024835.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005551304.1
COORDINATES: protein motif:HMM:NF013670.2
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012507658.1
COORDINATES: protein motif:HMM:NF028094.2
COORDINATES: protein motif:HMM:NF016302.2
COORDINATES: protein motif:HMM:NF017386.2
COORDINATES: protein motif:HMM:NF015736.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:TIGR01593.1
COORDINATES: protein motif:HMM:NF025253.2
GO:0098024 - virus tail, fiber [Evidence IEA]
GO:0046718 - viral entry into host cell [Evidence IEA]; GO:0019062 - virion attachment to host cell [Evidence IEA]
COORDINATES: protein motif:HMM:NF023657.2
COORDINATES: protein motif:HMM:NF023181.2