Halogeometricum borinquense DSM 11551 plasmid pHBOR05, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.
The complete plasmid5 of Halogeometricum borinquense DSM 11551
Submitted (10-AUG-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001695.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4082733\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Halogeometricum borinquense PR3, DSM 11551\nCulture Collection ID :: DSM 11551, ATCC 700274, JCM 10706\nGOLD Stamp ID :: Gc01108\nFunding Program :: DOE-GEBA 2007\nNumber of Reads :: 2826 Sanger\nAssembly Method :: Newbler, PGA\nSequencing Depth :: 9.7x Sanger; 21.8x 454\nGene Calling Method :: GeneMark, GenePRIMP\nIsolation Site :: Solar salterns of Cabo Rojo Puerto Rico\nIsolation Country :: Puerto Rico\nLatitude :: 18.088189\nLongitude :: -67.147095\nOxygen Requirement :: Aerobe\nCell Shape :: Pleomorphic-shaped\nMotility :: Motile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nTemperature Optimum :: 40C\nSalinity :: Halophile\nGram Staining :: gram-\nBiotic Relationship :: Free living\nDiseases :: None\nHabitat :: Solar saltern\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 13:46:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,929\nCDSs (total) :: 3,869\nGenes (coding) :: 3,822\nCDSs (with protein) :: 3,822\nGenes (RNA) :: 60\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 2\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 27 of 47\nPseudo Genes (incomplete) :: 26 of 47\nPseudo Genes (internal stop) :: 11 of 47\nPseudo Genes (multiple problems) :: 14 of 47\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Halogeometricum borinquense
COORDINATES: similar to AA sequence:RefSeq:WP_006057207.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006057205.1
COORDINATES: similar to AA sequence:RefSeq:WP_006057202.1
COORDINATES: similar to AA sequence:RefSeq:WP_006057201.1
COORDINATES: similar to AA sequence:RefSeq:WP_006057200.1
COORDINATES: similar to AA sequence:RefSeq:WP_006057199.1
COORDINATES: similar to AA sequence:RefSeq:WP_006057198.1
COORDINATES: similar to AA sequence:RefSeq:WP_006057197.1
COORDINATES: similar to AA sequence:RefSeq:WP_006057195.1
COORDINATES: similar to AA sequence:RefSeq:WP_006057194.1
COORDINATES: similar to AA sequence:RefSeq:WP_005559789.1
COORDINATES: similar to AA sequence:RefSeq:WP_006057214.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006057213.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006057212.1
COORDINATES: similar to AA sequence:RefSeq:WP_006057211.1
COORDINATES: similar to AA sequence:RefSeq:WP_006057209.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006057208.1