Halogeometricum borinquense DSM 11551 plasmid pHBOR05, complete sequence.
type: Entry
definition: Halogeometricum borinquense DSM 11551 plasmid pHBOR05, complete sequence.
sequence version: NC_014737.1
sequence date: 2023-03-24
sequence: sequence
division: CON
label: NC_014737.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN00002580
keyword: RefSeq
source: Halogeometricum borinquense DSM 11551
organism: Halogeometricum borinquense DSM 11551
taxonomy: Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001695.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4082733\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Halogeometricum borinquense PR3, DSM 11551\nCulture Collection ID :: DSM 11551, ATCC 700274, JCM 10706\nGOLD Stamp ID :: Gc01108\nFunding Program :: DOE-GEBA 2007\nNumber of Reads :: 2826 Sanger\nAssembly Method :: Newbler, PGA\nSequencing Depth :: 9.7x Sanger; 21.8x 454\nGene Calling Method :: GeneMark, GenePRIMP\nIsolation Site :: Solar salterns of Cabo Rojo Puerto Rico\nIsolation Country :: Puerto Rico\nLatitude :: 18.088189\nLongitude :: -67.147095\nOxygen Requirement :: Aerobe\nCell Shape :: Pleomorphic-shaped\nMotility :: Motile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nTemperature Optimum :: 40C\nSalinity :: Halophile\nGram Staining :: gram-\nBiotic Relationship :: Free living\nDiseases :: None\nHabitat :: Solar saltern\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03…

sequence
subclass of: SO_0000155
sequence length: 17535
topology: circular
so has quality: SO_0000988
location: 1..17535
location: region:1-17535:1
RO_0002162: 469382

NC_014737
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN00002580
type: BioSample
SIO_000068: biosample

1
title: The complete plasmid5 of Halogeometricum borinquense DSM 11551
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Kyrpides, N.
author: Mavromatis, K.
author: Mikhailova, N.
author: Anderson, I.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Markowitz, V.
author: Cheng, J.-F.
author: Hugenholtz, P.
author: Woyke, T.
author: Wu, D.
author: Tindal, B.
author: Klenk, H.-P.
author: Eisen, J.A.
journal: Unpublished

2
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Kyrpides, N.
author: Mavromatis, K.
author: Mikhailova, N.
author: Anderson, I.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Markowitz, V.
author: Cheng, J.-F.
author: Hugenholtz, P.
author: Woyke, T.
author: Wu, D.
author: Tindal, B.
author: Klenk, H.-P.
author: Eisen, J.A.
journal: Submitted (10-AUG-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17535:1
position: 17535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17535:1:source
so part of: sequence
organism: Halogeometricum borinquense DSM 11551
mol type: genomic DNA
strain: DSM 11551
culture collection: DSM:11551
type material: type strain of Halogeometricum borinquense
plasmid: pHBOR05
note: type strain of Halogeometricum borinquense

469382
type: Taxonomy
SIO_000068: taxonomy

HBOR_RS19085
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19085
old locus tag: Hbor_37840
so part of: sequence
location: complement(485..1663)
location: region:485-1663:-1
so has part: feature:485-1663:-1:exon
subclass of: SO_0000010

9989630
type: Gene
SIO_000068: ncbigene

position:485:-1
position: 485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1663:-1
position: 1663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:485-1663:-1:exon

HBOR_RS19085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19085
old locus tag: Hbor_37840
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057207.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MSTQNPTDTTETKRKEEILAEFPDPHTTSKQYTGDQRCHDDFWDIKRAFGIPKMEWDATYTEEEAEGKAYAEAGERKLRKKLLPNIIFHDWDPDDHQLSVGGTDWLAVGPPGSGKSNLALWLAVRLMEANNEKVIWRASTSRSEWLPFAPWARVCLPKGVDIEARFVPKDPTQEGFEVDLEEIVREVVRYRDPVHLNHDLLKPGQFHVVYPDPKMRRLQEIYENDQEKQYDGLEFSEDDPLNHWWFGWMHARIAEGPHHWSSIMFDEIGDIAPEAARNDEYAHYQKVELLKDCWVDARKYGHSIFAFGHSEADIHSMIRRKIRWRVTMNGTANPTNSGDVVGFRRVPMEDDIMSSRDVGMFMPFSESEFQYPPVKAAHIPSPIDMTLKVSYA
SIO_010081: HBOR_RS19085
subclass of: SO_0000673
so part of: HBOR_RS19085
location: complement(485..1663)
location: region:485-1663:-1
so has part: feature:485-1663:-1:exon

WP_006057207.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:485-1663:-1:exon

HBOR_RS19090
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19090
old locus tag: Hbor_37850
so part of: sequence
location: complement(1660..2463)
location: region:1660-2463:-1
so has part: feature:1660-2463:-1:exon
subclass of: SO_0000010

9989608
type: Gene
SIO_000068: ncbigene

position:1660:-1
position: 1660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2463:-1
position: 2463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1660-2463:-1:exon

HBOR_RS19090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19090
old locus tag: Hbor_37850
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSDTDREIASTSRPALSKLEADHDDLVTRLRDGFESSEDLLFWLQEVSVATLGCFPDEDLTDAFVESNSKACLIVGPDRHNTLLDEPTDLQTAKRFRLGFEETFLLPAFRQSYRKLRKNANEYVRPEDRPVTRATDPVALRPALEELHERQRETIEDVLGGFEDEEELLDWVRGLIGASYGQIDRDVITGLRMSDRVSRDNLLSDPSMEYSLNDGKGSAWFRKSLVAVQLLPAFNAGVRKLVDRAGEETSEEEEDENGDVGDHISV
SIO_010081: HBOR_RS19090
subclass of: SO_0000673
so part of: HBOR_RS19090
location: complement(1660..2463)
location: region:1660-2463:-1
so has part: feature:1660-2463:-1:exon

WP_006057206.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1660-2463:-1:exon

HBOR_RS19095
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19095
old locus tag: Hbor_37860
so part of: sequence
location: complement(2460..3248)
location: region:2460-3248:-1
so has part: feature:2460-3248:-1:exon
subclass of: SO_0000010

9989609
type: Gene
SIO_000068: ncbigene

position:2460:-1
position: 2460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3248:-1
position: 3248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2460-3248:-1:exon

HBOR_RS19095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19095
old locus tag: Hbor_37860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057205.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSESAPSRKDFGRPALRRLEEEHDDLVAELRAGFDSLDEVIFWCQRLSMRTLGCLDDGLYQQFGNERVLWSTLITSPERERYGHDTVSLEAAEEFRLLVEATYVLPATRSAFRKLRGSAGEYFGDDKDDTVTVADEQFIAMRPALDHLEERQKETLSQLLDGIEGGKPELLDWLRDLNGATFGQIDSEFQVRAFKESRVTQEVLLDEFEDPSAARKTRQLFAFEFLLPAFNAGVRKLVGKAGEDTVEEEEDDQSAGDHIDV
SIO_010081: HBOR_RS19095
subclass of: SO_0000673
so part of: HBOR_RS19095
location: complement(2460..3248)
location: region:2460-3248:-1
so has part: feature:2460-3248:-1:exon

WP_006057205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2460-3248:-1:exon

HBOR_RS19100
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19100
old locus tag: Hbor_37870
so part of: sequence
location: complement(3245..4390)
location: region:3245-4390:-1
so has part: feature:3245-4390:-1:exon
subclass of: SO_0000010

9989610
type: Gene
SIO_000068: ncbigene

position:3245:-1
position: 3245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4390:-1
position: 4390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3245-4390:-1:exon

HBOR_RS19100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19100
old locus tag: Hbor_37870
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEPPEDAGDRDAQSRLEEELDRPRGILTTADREYLTHPEGSLDLTEQTARKRRSRIRERVYNAILDFDYLAKLPEDERRPVFEKVRDGWVNGTSSVALRRLFKFVYLGLKSVGLERGFGNVLERAIEDAEKEFARGHGDHVEVDVTFDVEVESRTTSEELEERYEEGEKLSLEEQSVLAREKDYGLTDEMMMDSPYFDPDRENPGEAAFEAMMRDRAENLRAQDAPEEDIPEFDEDMDLPEHQRRVSPLIEGSMMATPIPQSIPMNFDQLYEDLSKVLVWALRDDIDKTDIGFEEFHDVQELMPNPVIIQTYYENAGDEFAIDEDDQLKEFVTLWDAVLAAAGWERPEGFDGLLEAMDFTPDKYDSERLDALLTELEGGR
SIO_010081: HBOR_RS19100
subclass of: SO_0000673
so part of: HBOR_RS19100
location: complement(3245..4390)
location: region:3245-4390:-1
so has part: feature:3245-4390:-1:exon

WP_144018737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3245-4390:-1:exon

HBOR_RS19105
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19105
old locus tag: Hbor_37880
so part of: sequence
location: 4811..5074
location: region:4811-5074:1
so has part: feature:4811-5074:1:exon
subclass of: SO_0000010

9989611
type: Gene
SIO_000068: ncbigene

position:4811:1
position: 4811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5074:1
position: 5074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4811-5074:1:exon

HBOR_RS19105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19105
old locus tag: Hbor_37880
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVRRLTVDEAAQRNWDDPEALEELHVRRGWAPADIARKFQTDAATVREELKRQNLFQKDQSLPPKQGLARKLWEMGTDPDAGGEKA
SIO_010081: HBOR_RS19105
subclass of: SO_0000673
so part of: HBOR_RS19105
location: 4811..5074
location: region:4811-5074:1
so has part: feature:4811-5074:1:exon

WP_013446657.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4811-5074:1:exon

HBOR_RS19110
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19110
old locus tag: Hbor_37890
so part of: sequence
location: 5071..5313
location: region:5071-5313:1
so has part: feature:5071-5313:1:exon
subclass of: SO_0000010

9989612
type: Gene
SIO_000068: ncbigene

position:5071:1
position: 5071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5313:1
position: 5313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5071-5313:1:exon

HBOR_RS19110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19110
old locus tag: Hbor_37890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057202.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSAGTSPSGSVAEIVEDLGGTDTVTVDLPGVVVEAVDAACCAALGCRVSEPLSRVTIDGFGTRVLCPDHVEHLIEREVEA
SIO_010081: HBOR_RS19110
subclass of: SO_0000673
so part of: HBOR_RS19110
location: 5071..5313
location: region:5071-5313:1
so has part: feature:5071-5313:1:exon

WP_006057202.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5071-5313:1:exon

HBOR_RS19115
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19115
old locus tag: Hbor_37900
so part of: sequence
location: 5630..6943
location: region:5630-6943:1
so has part: feature:5630-6943:1:exon
subclass of: SO_0000010

9989613
type: Gene
SIO_000068: ncbigene

position:5630:1
position: 5630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6943:1
position: 6943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5630-6943:1:exon

HBOR_RS19115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19115
old locus tag: Hbor_37900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057201.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAGDEVPDVEAGTEELLDEAEEIDSDDGMTARMRRENQLLGRAVDYVAAWSEDGAISSANANALADALASELAHYTKTDIKDEFTDVFVDDGSGANGIPFDELIEQRLQEVKVVSTTDAKQGLVWRWHFSDGVQLETEKSKDEGRKHYDWTAWKEDYFEALISLGKGERIAPPSRERRDSNDWKEFLSEILLDRAETVEHVGPRTEAVEHLRDYVNRQTAYADVKDMRDRQGIWMDAPPADDDGEAATDGGGPSQIRVPTQAVKRICDQAGIETRALQIELDARSETLPDVAGVSDYEYVDGQRVSFWCLDAGFAEPAEFVEEPESPAEQAAREQEEEAEEAQTDVGAVDDKDDSDGTESEQETDDVTEDGDEGDEDAHDGPATSDETESAEDDVDGHTEDERPPEDAPDDGPANDFESGITGGFGIDPDDDDEGGE
SIO_010081: HBOR_RS19115
subclass of: SO_0000673
so part of: HBOR_RS19115
location: 5630..6943
location: region:5630-6943:1
so has part: feature:5630-6943:1:exon

WP_006057201.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5630-6943:1:exon

HBOR_RS19120
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19120
old locus tag: Hbor_37910
so part of: sequence
location: 6952..8832
location: region:6952-8832:1
so has part: feature:6952-8832:1:exon
subclass of: SO_0000010

9989614
type: Gene
SIO_000068: ncbigene

position:6952:1
position: 6952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8832:1
position: 8832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6952-8832:1:exon

HBOR_RS19120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19120
old locus tag: Hbor_37910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057200.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MDLEDIEITGIEDVPVTESLAYHGPPGTGKTSKSAARVAKLIQDHDYGIEDVAWVTYRRSLARDTLARLASWDIIDPSELENPSDGATRYIGTAHAVANRCASIGEGVVEPWHRSDFCEKRGMQFWTSEPWEDSAGKLLFRVLDYLANANTTPEDKAALRECPHTDDLRDHWQGDIVEAWYEWEDYKGQMNIIDFHEMLKRPLQEGESPGRPILVIDEYHDVTALMDALFRSWMEDAEIVIVAGDPHQVVNAYDGASPAFFEDLDLPTVLLDTTYRVPEEHWALATRMLADAHTPPAVTRDGRGRVNDINSPRFEHSEENGWVNLPGRDTPGSPGWICEKFGREETLFLTRTRMQADGVGAALEAAGIPYRSQPELHGWNTEETDIRLAVHNALQKIEGYSPANFRYGGNKAFGEYTGNNKNPADISLKNSEAAALLEATSAHDLDITRSDANDLVEELRDDEDGHLTLREFDDYVTKSFWERYTAGAGSVNRLNKGPFGSGSSGERELRALRAALNRQDGPISPDSISCHAITIHASKGMEADDVVVYDGISNRILREIQVNDESRRNEYRTWYVALSRAKKRLHVMRDGFAWTNSIIPENLQAAAREAYQEGHVDGDLPGGETA
SIO_010081: HBOR_RS19120
subclass of: SO_0000673
so part of: HBOR_RS19120
location: 6952..8832
location: region:6952-8832:1
so has part: feature:6952-8832:1:exon

WP_006057200.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6952-8832:1:exon

HBOR_RS19125
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19125
old locus tag: Hbor_37920
so part of: sequence
location: 8829..10118
location: region:8829-10118:1
so has part: feature:8829-10118:1:exon
subclass of: SO_0000010

9989615
type: Gene
SIO_000068: ncbigene

position:8829:1
position: 8829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10118:1
position: 10118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8829-10118:1:exon

HBOR_RS19125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19125
old locus tag: Hbor_37920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057199.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTGAFTVPMETSRRYIPEEMKEFDHWVLWSPEFGKQIMAPWVTGHCYPASWGEQETERPETTFEKAKMLADLPTEEVHRTYPFPPKDGEEEPHVPERIIPTFLLLHDPPEPPLMQVDFDDVRDPASGCVSEEVEEIVERLDAFTEVSQSGEGLHVFVRAELPGGLGKFIAELDDVGEIEMYDHGRVVGATWRHVEGTPTDVPERQDVVEDLIKTYESEEYRQRRLRSSSEDASETDWNSDVSGIEAAIRNRENDSSSSGRSPYFDIDIRSIADTGDFSRYRRETPGDEWQGPHPAHGPMHSDPEECTNFGVEPSGNTWFCFAHNAGGRAIELAAVLADEVDVSCADIPKRGAGQGWLGDRPVKMLKTCLWLRDHAGVPDDTKPPHAALLGVADVEDLYVRDRDRGILGEKNAELCRRVFDEMTLDYFE
SIO_010081: HBOR_RS19125
subclass of: SO_0000673
so part of: HBOR_RS19125
location: 8829..10118
location: region:8829-10118:1
so has part: feature:8829-10118:1:exon

WP_006057199.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8829-10118:1:exon

HBOR_RS19130
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19130
old locus tag: Hbor_37930
so part of: sequence
location: 10627..11295
location: region:10627-11295:1
so has part: feature:10627-11295:1:exon
subclass of: SO_0000010

9989616
type: Gene
SIO_000068: ncbigene

position:10627:1
position: 10627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11295:1
position: 11295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10627-11295:1:exon

HBOR_RS19130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19130
old locus tag: Hbor_37930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057198.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MGTGHFNKDRITHLERYRPLEPDQIPTWKEAAKDGKPIEELLGLTLLHTGIRRTTMAHMTEAWLNLDDEENPHVKIPPRQECTLGRGKQGSGGDTKNTGQPCYNCREKRPGYWKPKSHHGVRPIPIREEDVEEILRNYFSVHDTVGGREKVNYYVEKISDRADLGREVTPHDLRNTYGTRLARKGFTPHEIMHLMGHSSIGIARFYIKMSGTRLGLAYDEKW
SIO_010081: HBOR_RS19130
subclass of: SO_0000673
so part of: HBOR_RS19130
location: 10627..11295
location: region:10627-11295:1
so has part: feature:10627-11295:1:exon

WP_006057198.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10627-11295:1:exon

HBOR_RS19135
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19135
old locus tag: Hbor_37940
so part of: sequence
location: 11289..12107
location: region:11289-12107:1
so has part: feature:11289-12107:1:exon
subclass of: SO_0000010

9989617
type: Gene
SIO_000068: ncbigene

position:11289:1
position: 11289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12107:1
position: 12107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11289-12107:1:exon

HBOR_RS19135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19135
old locus tag: Hbor_37940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057197.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MVEEKTLTDYNGRPLADASQPLDQEQLAAWREAALEADGVKRLAGLLSPYTGLRNSTVAHLRPSWVVYKTKIPEIVVPSEAPCNLGNGDDACYRCQVNRDGTWKPESPHGARRVPVPDEDVVEALRDYFALYDKLRTEQRLRTYLKDLVKDASLQRDVNAHALRHTYGTILARKGFEIETMRQAMGYSMDEDNGRFAVRRYIQFVDEREEERYACGADRAQGGTCEMPVDTPDARCYVHDDRVITCSATNRYGEPCHRIVDQLTQRCAFHQD
SIO_010081: HBOR_RS19135
subclass of: SO_0000673
so part of: HBOR_RS19135
location: 11289..12107
location: region:11289-12107:1
so has part: feature:11289-12107:1:exon

WP_006057197.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11289-12107:1:exon

HBOR_RS19785
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19785
so part of: sequence
location: complement(12228..12824)
location: region:12228-12824:-1
so has part: feature:12228-12824:-1:exon
subclass of: SO_0000010

40927994
type: Gene
SIO_000068: ncbigene

position:12228:-1
position: 12228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12824:-1
position: 12824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12228-12824:-1:exon

HBOR_RS19785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19785
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIRERNIIRDRLQPGDIVLYDGFQVEGERWRVVELEDDHRFLGFGPLDVEEEDLVVRRLQFTNVEEIVPRDDPGGVEDAPSTEPRPPASLPKYVVEAVERQGADRLRDLADWAEERAAFLEAEAREQLEEPPAEGEVDDVEEDVDGDDLDEVPDGVSVNVYKMKVPCGPGCDGCPHGPYRYAKWREGDKVRTKYLGK
SIO_010081: HBOR_RS19785
subclass of: SO_0000673
so part of: HBOR_RS19785
location: complement(12228..12824)
location: region:12228-12824:-1
so has part: feature:12228-12824:-1:exon

WP_006057196.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12228-12824:-1:exon

HBOR_RS19145
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19145
old locus tag: Hbor_37960
so part of: sequence
location: 13032..13430
location: region:13032-13430:1
so has part: feature:13032-13430:1:exon
subclass of: SO_0000010

9989619
type: Gene
SIO_000068: ncbigene

position:13032:1
position: 13032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13430:1
position: 13430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13032-13430:1:exon

HBOR_RS19145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19145
old locus tag: Hbor_37960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057195.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTVEETLKQRFTGLPSDQNAVDASCCKRCREYGSLEEMEFDENERVYATVAWKKNLRGEASWELIGLFHQDHGDVADLPEDPRRPCAVLEVTLEPSNALPRFGQIDGAAFTLGQVDVLDTAGVVARKTVAAD
SIO_010081: HBOR_RS19145
subclass of: SO_0000673
so part of: HBOR_RS19145
location: 13032..13430
location: region:13032-13430:1
so has part: feature:13032-13430:1:exon

WP_006057195.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13032-13430:1:exon

HBOR_RS19150
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19150
old locus tag: Hbor_37970
so part of: sequence
location: complement(13427..13846)
location: region:13427-13846:-1
so has part: feature:13427-13846:-1:exon
subclass of: SO_0000010

9989620
type: Gene
SIO_000068: ncbigene

position:13427:-1
position: 13427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13846:-1
position: 13846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13427-13846:-1:exon

HBOR_RS19150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19150
old locus tag: Hbor_37970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057194.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEDDVDPENPRPEGHYPRFRDNEWHYVPDELAQTISLGPAGDGEPGQDWVLTYTPEKRNPDDREKVLVRLTPRALHELYIETKGLSNDARMHGHSAECDLCGKQVDFDRAIPNARGEPCHKRCWSEYTGAPQWFEEQG
SIO_010081: HBOR_RS19150
subclass of: SO_0000673
so part of: HBOR_RS19150
location: complement(13427..13846)
location: region:13427-13846:-1
so has part: feature:13427-13846:-1:exon

WP_006057194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13427-13846:-1:exon

HBOR_RS19160
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19160
old locus tag: Hbor_37990
so part of: sequence
location: complement(14055..14684)
location: region:14055-14684:-1
so has part: feature:14055-14684:-1:exon
subclass of: SO_0000010

9989622
type: Gene
SIO_000068: ncbigene

position:14055:-1
position: 14055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14684:-1
position: 14684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14055-14684:-1:exon

HBOR_RS19160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19160
old locus tag: Hbor_37990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005559789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MSTTETTQAKSWMKPDQVKRVRSVCLSETFPTYLQQRNYAMITVLADTGLRVSELVDLDVGDLHLDAERPHIYLPSHKQKGRPGDATVYLDDFGDVYSARDTLKQYLTGRWKEPENGALFPSRESDRATPRSVQRVVKRAAQAADVTPQVKSVATEDSEPSPEDVTPHTFRHSVAYRIIVEQGGRLEDVQRHLRHSSRETTDRIYSHLV
SIO_010081: HBOR_RS19160
subclass of: SO_0000673
so part of: HBOR_RS19160
location: complement(14055..14684)
location: region:14055-14684:-1
so has part: feature:14055-14684:-1:exon

WP_013446660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14055-14684:-1:exon

HBOR_RS19165
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19165
old locus tag: Hbor_38000
so part of: sequence
location: 14873..15148
location: region:14873-15148:1
so has part: feature:14873-15148:1:exon
subclass of: SO_0000010

9989623
type: Gene
SIO_000068: ncbigene

position:14873:1
position: 14873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15148:1
position: 15148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14873-15148:1:exon

HBOR_RS19165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19165
old locus tag: Hbor_38000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057214.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MSEADTPPDKTTVNIRITETFLADVDGAWEDLGYNSRSEFIRDVLRDAVKHPDFNRADLKAMLAGEVDIQEGRTHTSDEVKAEYGLDGEDE
SIO_010081: HBOR_RS19165
subclass of: SO_0000673
so part of: HBOR_RS19165
location: 14873..15148
location: region:14873-15148:1
so has part: feature:14873-15148:1:exon

WP_006057214.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14873-15148:1:exon

HBOR_RS19170
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19170
old locus tag: Hbor_38010
so part of: sequence
location: 15152..15436
location: region:15152-15436:1
so has part: feature:15152-15436:1:exon
subclass of: SO_0000010

9989624
type: Gene
SIO_000068: ncbigene

position:15152:1
position: 15152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15436:1
position: 15436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15152-15436:1:exon

HBOR_RS19170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19170
old locus tag: Hbor_38010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057213.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MSDDWRWELTDTAERQFGSLDEYARERIASKLDEIVDDQWREPSDYLEPLQGAPHQKLRIGPFRLGCRADRDKKILYVLRIRKRGGDAYRGDDD
SIO_010081: HBOR_RS19170
subclass of: SO_0000673
so part of: HBOR_RS19170
location: 15152..15436
location: region:15152-15436:1
so has part: feature:15152-15436:1:exon

WP_006057213.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15152-15436:1:exon

HBOR_RS19175
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19175
old locus tag: Hbor_38020
so part of: sequence
location: complement(15433..15972)
location: region:15433-15972:-1
so has part: feature:15433-15972:-1:exon
subclass of: SO_0000010

9989625
type: Gene
SIO_000068: ncbigene

position:15433:-1
position: 15433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15972:-1
position: 15972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15433-15972:-1:exon

HBOR_RS19175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19175
old locus tag: Hbor_38020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057212.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGRTTIQVSDELADELHERKERGDSYEDVIWRLIEEGDQSASQEPPESPHSRTERRDAPSPPPEQEAAESPQESVQEDAEDVLRSLDLSGSGSKYEARVETVLAFYEHLRDHPGERVSKGDLEDLVEECGLDVAYASFGSFWGNWVKKNESQGRDFNTLTQLPGVEMDGDDYVYTGESA
SIO_010081: HBOR_RS19175
subclass of: SO_0000673
so part of: HBOR_RS19175
location: complement(15433..15972)
location: region:15433-15972:-1
so has part: feature:15433-15972:-1:exon

WP_241432441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15433-15972:-1:exon

HBOR_RS19180
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19180
old locus tag: Hbor_38030
so part of: sequence
location: 16166..16594
location: region:16166-16594:1
so has part: feature:16166-16594:1:exon
subclass of: SO_0000010

9989626
type: Gene
SIO_000068: ncbigene

position:16166:1
position: 16166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16594:1
position: 16594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16166-16594:1:exon

HBOR_RS19180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19180
old locus tag: Hbor_38030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057211.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSANDCNGHNGHDTDDCTATEPNWESVARSALAELFFTRKLELQNSLGTIEARLGRFSDDDLTAEHIRQFRNDFYDLQRLVEEDIVPLVDGVEPYEQATMNLTAGQKAKALDLRWEDVRDLPRKSEIEDEEEEETEGDDADE
SIO_010081: HBOR_RS19180
subclass of: SO_0000673
so part of: HBOR_RS19180
location: 16166..16594
location: region:16166-16594:1
so has part: feature:16166-16594:1:exon

WP_006057211.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16166-16594:1:exon

HBOR_RS20510
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS20510
old locus tag: Hbor_38040
so part of: sequence
location: 16581..16715
location: region:16581-16715:1
so has part: feature:16581-16715:1:exon
subclass of: SO_0000010

79382661
type: Gene
SIO_000068: ncbigene

position:16581:1
position: 16581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16715:1
position: 16715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16581-16715:1:exon

HBOR_RS20510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS20510
old locus tag: Hbor_38040
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRTSDARVTARMRRTESGEVLREYIVDGVAYGSIDAVKTALGGA
SIO_010081: HBOR_RS20510
subclass of: SO_0000673
so part of: HBOR_RS20510
location: 16581..16715
location: region:16581-16715:1
so has part: feature:16581-16715:1:exon

WP_006057210.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16581-16715:1:exon

HBOR_RS19185
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19185
old locus tag: Hbor_38050
so part of: sequence
location: 16720..16938
location: region:16720-16938:1
so has part: feature:16720-16938:1:exon
subclass of: SO_0000010

9989628
type: Gene
SIO_000068: ncbigene

position:16720:1
position: 16720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16938:1
position: 16938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16720-16938:1:exon

HBOR_RS19185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19185
old locus tag: Hbor_38050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057209.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AbrB/MazE/SpoVT family DNA-binding domain-containing protein
translation: MQEHWSRRGYLGSVAGLAGALAGVSNSDRDREEDDADAQTPGLQTITLRIPKEVADDLDVEAGDSVLYQGTN
SIO_010081: HBOR_RS19185
subclass of: SO_0000673
so part of: HBOR_RS19185
location: 16720..16938
location: region:16720-16938:1
so has part: feature:16720-16938:1:exon

WP_006057209.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16720-16938:1:exon

HBOR_RS19190
type: Gene
subclass of: SO_0000704
RO_0002162: 469382
locus tag: HBOR_RS19190
old locus tag: Hbor_38060
so part of: sequence
location: 16986..17246
location: region:16986-17246:1
so has part: feature:16986-17246:1:exon
subclass of: SO_0000010

9989629
type: Gene
SIO_000068: ncbigene

position:16986:1
position: 16986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17246:1
position: 17246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16986-17246:1:exon

HBOR_RS19190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 469382
locus tag: HBOR_RS19190
old locus tag: Hbor_38060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006057208.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDDDTAEITVTYRPDDQRAEVRCDYPGDDPEDRDDRVRQLFEAVYEAASDELEDEGLHVIAGGEVTDAENAVAHSFGTDDDVPTI
SIO_010081: HBOR_RS19190
subclass of: SO_0000673
so part of: HBOR_RS19190
location: 16986..17246
location: region:16986-17246:1
so has part: feature:16986-17246:1:exon

WP_006057208.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16986-17246:1:exon