Erwinia tasmaniensis Et1/99 plasmid pET45, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Erwinia.
The genome of Erwinia tasmaniensis strain Et1/99, a non-pathogenic bacterium in the genus Erwinia
Submitted (27-AUG-2007) Max Planck Institute for Molecular Genetics, proScience Ihnestrasse 73, D-14195 Berlin, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCU468132.1.\nThis project was carried out by\n*Max Planck Institute for Molecular Genetics, Berlin, Germany\n (principle investigator);\n*Julius Kuehn Institute for Plant Protection in Fruit Crops and\n Viticulture, Dossenheim, Germany\n-------------- Genome Center\n Center: Max Planck Institute for Molecular Genetics\n Center code: MPIMG\n--------------.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:11:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,784\nCDSs (total) :: 3,667\nGenes (coding) :: 3,584\nCDSs (with protein) :: 3,584\nGenes (RNA) :: 117\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 81\nncRNAs :: 14\nPseudo Genes (total) :: 83\nCDSs (without protein) :: 83\nPseudo Genes (ambiguous residues) :: 0 of 83\nPseudo Genes (frameshifted) :: 40 of 83\nPseudo Genes (incomplete) :: 52 of 83\nPseudo Genes (internal stop) :: 25 of 83\nPseudo Genes (multiple problems) :: 29 of 83\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012638432.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF017337.2
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_008324958.1
type IV conjugative transfer system protein TraL
COORDINATES: protein motif:HMM:NF017152.2
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: protein motif:HMM:NF010296.0
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_013512872.1
F-type conjugal transfer pilus assembly protein TraB
COORDINATES: similar to AA sequence:RefSeq:WP_013087204.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_004953910.1
COORDINATES: protein motif:HMM:NF021213.2
COORDINATES: similar to AA sequence:RefSeq:WP_014695882.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_000833231.1
conjugal transfer pilus assembly protein TraU
COORDINATES: protein motif:HMM:NF021209.2
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: protein motif:HMM:NF009016.0
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: protein motif:HMM:NF010257.0
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: protein motif:HMM:NF010288.0
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_014695895.1
conjugal transfer pilus assembly protein TraH
COORDINATES: protein motif:HMM:NF010295.2
conjugal transfer mating-pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_014063897.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02759.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: protein motif:HMM:TIGR02686.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013488.2
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040977.1
COORDINATES: similar to AA sequence:RefSeq:WP_012534781.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016191128.1
COORDINATES: similar to AA sequence:RefSeq:WP_001093608.1
COORDINATES: similar to AA sequence:RefSeq:WP_017346949.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF018148.2
COORDINATES: protein motif:HMM:NF022241.2
plasmid partitioning/stability family protein
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001159044.1
succinate dehydrogenase flavoprotein subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007888163.1