Erwinia tasmaniensis Et1/99 plasmid pET49, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Erwinia.
The genome of Erwinia tasmaniensis strain Et1/99, a non-pathogenic bacterium in the genus Erwinia
Submitted (27-AUG-2007) Max Planck Institute for Molecular Genetics, proScience Ihnestrasse 73, D-14195 Berlin, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCU468131.1.\nThis project was carried out by\n*Max Planck Institute for Molecular Genetics, Berlin, Germany\n (principle investigator);\n*Julius Kuehn Institute for Plant Protection in Fruit Crops and\n Viticulture, Dossenheim, Germany\n-------------- Genome Center\n Center: Max Planck Institute for Molecular Genetics\n Center code: MPIMG\n--------------.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:11:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,784\nCDSs (total) :: 3,667\nGenes (coding) :: 3,584\nCDSs (with protein) :: 3,584\nGenes (RNA) :: 117\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 81\nncRNAs :: 14\nPseudo Genes (total) :: 83\nCDSs (without protein) :: 83\nPseudo Genes (ambiguous residues) :: 0 of 83\nPseudo Genes (frameshifted) :: 40 of 83\nPseudo Genes (incomplete) :: 52 of 83\nPseudo Genes (internal stop) :: 25 of 83\nPseudo Genes (multiple problems) :: 29 of 83\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_001050932.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001506553.1
COORDINATES: similar to AA sequence:RefSeq:WP_001000143.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012552790.1
COORDINATES: protein motif:HMM:NF019608.2
COORDINATES: protein motif:HMM:NF016491.2
COORDINATES: similar to AA sequence:RefSeq:WP_000432282.1
COORDINATES: similar to AA sequence:RefSeq:WP_000274524.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_001478088.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745331.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015697658.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: protein motif:HMM:NF022136.2
COORDINATES: similar to AA sequence:RefSeq:WP_013036394.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]; GO:0009306 - protein secretion [Evidence IEA]
PilN family type IVB pilus formation outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_013036395.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036396.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013036397.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036398.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013036399.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036400.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036401.1
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: similar to AA sequence:RefSeq:WP_013036403.1
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001078616.1
COORDINATES: similar to AA sequence:RefSeq:WP_000109868.1
COORDINATES: similar to AA sequence:RefSeq:WP_001243650.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998820.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF013014.2
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_012443234.1
putative addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:WP_011146555.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012443237.1
COORDINATES: similar to AA sequence:RefSeq:WP_002215731.1
COORDINATES: similar to AA sequence:RefSeq:WP_002215730.1
COORDINATES: similar to AA sequence:RefSeq:WP_001401654.1
COORDINATES: similar to AA sequence:RefSeq:WP_001025391.1
COORDINATES: similar to AA sequence:RefSeq:WP_012368908.1
COORDINATES: similar to AA sequence:RefSeq:WP_001487124.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000516401.1
COORDINATES: similar to AA sequence:RefSeq:WP_016529486.1
COORDINATES: protein motif:HMM:NF037421.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000963830.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745292.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501098.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037425.2