Bordetella flabilis strain AU10664 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.
Complete genome sequences of Bordetella bronchialis and Bordetella flabilis
Submitted (17-JUN-2016) Pediatrics-Infectious and Communicable Diseases, University of Michigan, 1150 West Medical Center Drive, MSRB III, Room 8323, Ann Arbor, MI 48109-0646, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP016173.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.5.0\nGenome Coverage :: 150 X\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 23:26:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,364\nCDSs (total) :: 5,302\nGenes (coding) :: 5,275\nCDSs (with protein) :: 5,275\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 27\nCDSs (without protein) :: 27\nPseudo Genes (ambiguous residues) :: 0 of 27\nPseudo Genes (frameshifted) :: 10 of 27\nPseudo Genes (incomplete) :: 21 of 27\nPseudo Genes (internal stop) :: 1 of 27\nPseudo Genes (multiple problems) :: 5 of 27\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF016670.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR02779.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012746465.1
COORDINATES: similar to AA sequence:RefSeq:WP_010928635.1
COORDINATES: similar to AA sequence:RefSeq:WP_015026471.1
COORDINATES: similar to AA sequence:RefSeq:WP_012206503.1
COORDINATES: protein motif:HMM:NF017736.2
COORDINATES: protein motif:HMM:NF019064.2
COORDINATES: protein motif:HMM:NF016785.2
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF013632.2
COORDINATES: protein motif:HMM:NF020384.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:TIGR03021.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF018562.2
COORDINATES: protein motif:HMM:TIGR02520.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]; GO:0009306 - protein secretion [Evidence IEA]
PilN family type IVB pilus formation outer membrane protein
COORDINATES: protein motif:HMM:NF022136.2
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: similar to AA sequence:RefSeq:WP_016489296.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017172460.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019097477.1
COORDINATES: similar to AA sequence:RefSeq:WP_017170384.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172462.1
type IVB secretion system protein IcmJDotN
COORDINATES: similar to AA sequence:RefSeq:WP_014592472.1
COORDINATES: protein motif:HMM:NF023713.2
DotH/IcmK family type IV secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_014592476.1
DotI/IcmL family type IV secretion protein
COORDINATES: protein motif:HMM:NF028126.2
Members of this family include DotD of type IVB secretion systems and TraH of plasmid conjugative plasmid systems, both lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017170375.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014592463.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172466.1
COORDINATES: similar to AA sequence:RefSeq:WP_017170368.1
COORDINATES: similar to AA sequence:RefSeq:WP_017170367.1
COORDINATES: similar to AA sequence:RefSeq:WP_017119270.1
COORDINATES: protein motif:HMM:TIGR04346.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF023351.2
inverse autotransporter beta domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002556029.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005622172.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011875430.1
COORDINATES: similar to AA sequence:RefSeq:WP_018079126.1
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: similar to AA sequence:RefSeq:WP_003804716.1
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]; GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]
flagellar transcriptional regulator FlhD
COORDINATES: similar to AA sequence:RefSeq:WP_012355822.1
COORDINATES: protein motif:HMM:NF013014.2
COORDINATES: protein motif:HMM:NF037521.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017170432.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017170430.1
COORDINATES: protein motif:HMM:NF013704.2
COORDINATES: protein motif:HMM:NF023926.2
COORDINATES: similar to AA sequence:RefSeq:WP_009683799.1
COORDINATES: similar to AA sequence:RefSeq:WP_011988585.1
COORDINATES: similar to AA sequence:RefSeq:WP_018605946.1
COORDINATES: similar to AA sequence:RefSeq:WP_014726296.1
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011236665.1
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF037909.2
COORDINATES: similar to AA sequence:RefSeq:WP_018746212.1
COORDINATES: similar to AA sequence:RefSeq:WP_011988594.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172437.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172438.1
strawberry notch C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017170404.1