Methylobacterium nodulans ORS 2060 plasmid pMNOD05, complete sequence.
type: Entry
definition: Methylobacterium nodulans ORS 2060 plasmid pMNOD05, complete sequence.
sequence version: NC_011888.1
sequence date: 2023-04-24
sequence: sequence
division: CON
label: NC_011888.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN00000043
keyword: RefSeq
source: Methylobacterium nodulans ORS 2060
organism: Methylobacterium nodulans ORS 2060
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylobacterium.
reference: 1
references: 22887658
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001354.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4003783\nSource DNA and bacteria available from Christopher J. Marx\n(cmarx@oeb.harvard.edu)\nContacts: Christopher J. Marx (cmarx@oeb.harvard.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 02:07:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,718\nCDSs (total) :: 8,621\nGenes (coding) :: 8,153\nCDSs (with protein) :: 8,153\nGenes (RNA) :: 97\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 4\nPseudo Genes (total) :: 468\nCDSs (without protein) :: 468\nPseudo Genes (ambiguous residues) :: 0 of 468\nPseudo Genes (frameshifted) :: 194 of 468\nPseudo Genes (incomplete) :: 372 of 468\nPseudo Genes (internal stop) :…

sequence
subclass of: SO_0000155
sequence length: 20286
topology: circular
so has quality: SO_0000988
location: 1..20286
location: region:1-20286:1
RO_0002162: 460265

NC_011888
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN00000043
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequences of six strains of the genus Methylobacterium
author: Marx, C.J.
author: Bringel, F.
author: Chistoserdova, L.
author: Moulin, L.
author: Farhan Ul Haque, M.
author: Fleischman, D.E.
author: Gruffaz, C.
author: Jourand, P.
author: Knief, C.
author: Lee, M.C.
author: Muller, E.E.
author: Nadalig, T.
author: Peyraud, R.
author: Roselli, S.
author: Russ, L.
author: Goodwin, L.A.
author: Ivanova, N.
author: Kyrpides, N.
author: Lajus, A.
author: Land, M.L.
author: Medigue, C.
author: Mikhailova, N.
author: Nolan, M.
author: Woyke, T.
author: Stolyar, S.
author: Vorholt, J.A.
author: Vuilleumier, S.
journal: J Bacteriol
volume: 194
issue: 17
pages: 4746-4748
year: 2012
pubmed: 22887658

22887658
type: PubMed
SIO_000068: pubmed

2
title: Complete sequence of plamid5 of Methylobacterium nodulans ORS 2060
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Sims, D.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Ivanova, N.
author: Marx, C.J.
author: Richardson, P.
journal: Unpublished

3
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Sims, D.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Ivanova, N.
author: Marx, C.J.
author: Richardson, P.
journal: Submitted (06-JAN-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20286:1
position: 20286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20286:1:source
so part of: sequence
organism: Methylobacterium nodulans ORS 2060
mol type: genomic DNA
strain: ORS 2060
type material: type strain of Methylobacterium nodulans
plasmid: pMNOD05

460265
type: Taxonomy
SIO_000068: taxonomy

MNOD_RS45580
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS45580
old locus tag: Mnod_7729
so part of: sequence
location: complement(688..1323)
location: region:688-1323:-1
so has part: feature:688-1323:-1:exon
subclass of: SO_0000010

position:688:-1
position: 688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1323:-1
position: 1323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:688-1323:-1:exon

MNOD_RS45580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS45580
old locus tag: Mnod_7729
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: ArsR family transcriptional regulator
translation: MQTEPKSTPNSTLDAVHMSVSEIAERDGVSKTTVSLHVKRLCEKHDLHVERDHLGRVRKVNVAHYDFLRARFSDPSKVQAPKRELPVPGSDSYDEATRRRAWYDVEKRRLEVDELRGALIRRDRLVEAISSCGEALVRPLDLLSQEADNLAEIHTREGDHGLRKALRALGRRIRAEQATALKALAAGAQREDDPLPDNGVCTHEPASEIPR
SIO_010081: MNOD_RS45580
subclass of: SO_0000673
so part of: MNOD_RS45580
location: complement(688..1323)
location: region:688-1323:-1
so has part: feature:688-1323:-1:exon

WP_244424905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:688-1323:-1:exon

MNOD_RS45585
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS45585
old locus tag: Mnod_7730
so part of: sequence
location: complement(1448..1837)
location: region:1448-1837:-1
so has part: feature:1448-1837:-1:exon
subclass of: SO_0000010

position:1448:-1
position: 1448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1837:-1
position: 1837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1448-1837:-1:exon

MNOD_RS45585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS45585
old locus tag: Mnod_7730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRDPAPLGPDLLARLAALSEGPAMPRVVVTPVTRNVTPSAAKGVTGFYQQNQLLTTTVTPVTPVTPSEPMQCEWEERAAILEHDGGWSRAEAECIASRLLDLRATDAGAEELAALDCHLLAGVRARGR
SIO_010081: MNOD_RS45585
subclass of: SO_0000673
so part of: MNOD_RS45585
location: complement(1448..1837)
location: region:1448-1837:-1
so has part: feature:1448-1837:-1:exon

WP_012631419.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1448-1837:-1:exon

MNOD_RS41020
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41020
old locus tag: Mnod_7731
so part of: sequence
location: complement(1834..4272)
location: region:1834-4272:-1
so has part: feature:1834-4272:-1:exon
subclass of: SO_0000010

position:1834:-1
position: 1834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4272:-1
position: 4272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1834-4272:-1:exon

MNOD_RS41020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41020
old locus tag: Mnod_7731
inference: COORDINATES: protein motif:HMM:NF017826.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF927 domain-containing protein
translation: MPVPDNAPPAFPRRHRDHGEPAAVWAYPDAEGRVLFYACRFALADGGKTYCPLTLFEFPNGALRWIWKGPPVPRPLYGLDQLAARPEAYVLLCEGEKSADAARTLVPDYVAITSPNGSKNARYADWSPLRGRHVVIWPDADKPGLDYAHEAATLALRAGAFSVALVEPPADVSAVGWDAADALDEGWTAERAGQLVAAAKSFSAAGAGDPEGLLAATEGDTSAGTAPIDENLPPVARLRPEIKWPYGYRMTAKGLVFKPKQDEPGEWLSGPFDVHALVRTEEGTGWSLAISFRDPDGRLQTVVVALADIAAGDASDVRREMASKGLRLASGRGAKDRFVSALASLTVDLRAMLVSRSGWHANGEVYAAPNFTATTPEREAEPIVFRAEQQATGFRTSGTLGAWIEEVGALAAGQGRLLFSLGVAFAGPLLEPLGQEPGAFNLVGPSSCGKTTALRMAGSVWGGGGPLGFAATWRTTSNALEGTAAAHNDSLLALDELGMCEPRDLDAAAYALTGGSGKGRLKADGDLRTRQRWRIMVLSTGEITLAQRIAEGAVTRNVRAGQMVRFVDVPADAGQGLGLFDHLAGYGHGSELSNAIRDRTGRLYGTAGPAFVNALLAKREGALGTARALIAAFLAERMPAGAGGQVQRVGARFALVAAAGELATAFGLLPVERGAVTAAAESIFRQWLAQRGGTGASEDRDALKAVRDFLQRHAAARFIKAAHGLDEGSWRAQNVAGFRLGRDEENGDFVFHDAGWAEATQGLDPRAAADALASAGFLVLDARGKRKRAERIGQRTMRVYRVAASILDGEDV
SIO_010081: MNOD_RS41020
subclass of: SO_0000673
so part of: MNOD_RS41020
location: complement(1834..4272)
location: region:1834-4272:-1
so has part: feature:1834-4272:-1:exon

WP_198157716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1834-4272:-1:exon

MNOD_RS41025
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41025
old locus tag: Mnod_7732
so part of: sequence
location: complement(4352..4660)
location: region:4352-4660:-1
so has part: feature:4352-4660:-1:exon
subclass of: SO_0000010

position:4352:-1
position: 4352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4660:-1
position: 4660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4352-4660:-1:exon

MNOD_RS41025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41025
old locus tag: Mnod_7732
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012290091.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRRRRIAFARIASAAAVHTEDIVRRWLPDGRREGAEWVCRNPLRSDRRAGSFKVNLRTGKWGDFATGNAGGDLISLAAFLQSISQAEAAVAVAGMVGVDAYE
SIO_010081: MNOD_RS41025
subclass of: SO_0000673
so part of: MNOD_RS41025
location: complement(4352..4660)
location: region:4352-4660:-1
so has part: feature:4352-4660:-1:exon

WP_012631421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4352-4660:-1:exon

MNOD_RS49815
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS49815
pseudo: true
so part of: sequence
location: complement(<5119..5304)
location: region:5119-5304:-1
so has part: feature:5119-5304:-1:exon
subclass of: SO_0000010

position:5119:-1
position: 5119
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:5304:-1
position: 5304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5119-5304:-1:exon

MNOD_RS49815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS49815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000152882.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: MNOD_RS49815
subclass of: SO_0000673
so part of: MNOD_RS49815
location: complement(<5119..5304)
location: region:5119-5304:-1
so has part: feature:5119-5304:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5119-5304:-1:exon

MNOD_RS41035
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41035
old locus tag: Mnod_7734
so part of: sequence
location: complement(5355..5564)
location: region:5355-5564:-1
so has part: feature:5355-5564:-1:exon
subclass of: SO_0000010

position:5355:-1
position: 5355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5564:-1
position: 5564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5355-5564:-1:exon

MNOD_RS41035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41035
old locus tag: Mnod_7734
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014286313.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MAQQNNTDDTLLNDVQAAEIACLSVRTLRAWRVRGFGPAYVKAGRAVRYRRSDLLAWIKARTVSPGEQA
SIO_010081: MNOD_RS41035
subclass of: SO_0000673
so part of: MNOD_RS41035
location: complement(5355..5564)
location: region:5355-5564:-1
so has part: feature:5355-5564:-1:exon

WP_012631423.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5355-5564:-1:exon

MNOD_RS45590
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS45590
old locus tag: Mnod_7735
so part of: sequence
location: complement(5747..6982)
location: region:5747-6982:-1
so has part: feature:5747-6982:-1:exon
subclass of: SO_0000010

position:5747:-1
position: 5747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6982:-1
position: 6982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5747-6982:-1:exon

MNOD_RS45590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS45590
old locus tag: Mnod_7735
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLPDLPIFEGERPDLNKREGYKPEGGPCVTSTAAALWWLFTPHKNGKPASDFDLGAALNARPYWQSWEKPNPSLNIDEDIEDLILATSKKTDQSVKLKPKRGNPEKIPSTYNVRHIISNGELSCLSYMNGGFEKLDCPYVYVRKSLAYAVGYAYDDLEIENKRRNDIPNNLGNVSAWLEQAKERLEKSIEKIAAIKLGPTPRKYARYDEPDLYRKTMIATDTSISDLKSAILLVESVSTKVDDQIKIVAQDGRPEKVWWLSFVVNCGVIWTTLTGVVPDVGQPGFQKFLENATKSLGGTREQFRRQIETARERLQVMDPWNQMDAERKGVLPPGQHPTTVLGRGEYDQLFNRWNRNIYSLIEGIKNGSDEAYTSLSITYTLADDEGKSKIRDMLEAHGLQDVGQKAVRRSH
SIO_010081: MNOD_RS45590
subclass of: SO_0000673
so part of: MNOD_RS45590
location: complement(5747..6982)
location: region:5747-6982:-1
so has part: feature:5747-6982:-1:exon

WP_157091887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5747-6982:-1:exon

MNOD_RS41040
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41040
old locus tag: Mnod_7736
so part of: sequence
location: complement(6996..7256)
location: region:6996-7256:-1
so has part: feature:6996-7256:-1:exon
subclass of: SO_0000010

position:6996:-1
position: 6996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7256:-1
position: 7256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6996-7256:-1:exon

MNOD_RS41040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41040
old locus tag: Mnod_7736
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017276142.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MSDERPLEPEQCRAARAIVGWSRADLAERCGVAASTLADFEAGKREPYARTLADVRRTLEGAGVIFISADEAGGPGVRRSLEAPGA
SIO_010081: MNOD_RS41040
subclass of: SO_0000673
so part of: MNOD_RS41040
location: complement(6996..7256)
location: region:6996-7256:-1
so has part: feature:6996-7256:-1:exon

WP_012631425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6996-7256:-1:exon

MNOD_RS41045
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41045
old locus tag: Mnod_7737
so part of: sequence
location: 7829..8557
location: region:7829-8557:1
so has part: feature:7829-8557:1:exon
subclass of: SO_0000010

position:7829:1
position: 7829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8557:1
position: 8557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7829-8557:1:exon

MNOD_RS41045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41045
old locus tag: Mnod_7737
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003604846.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFSEELRRSIERAPRDSLPTLSAALWKAFGAGAITEAEADALSRLIEARKTVIAAPAAPARRKLTGSRPRAPESLERRRRWCASSYLPPALAARFTPAEVAALSVIAVEAGHAGKCDLPIGRIAALAGVSESSVRNAVRAARGLGLVRVEERRVSAFRNDTNLVSVVSREWRAWLMRRAERGGCKSLKGTNKKGIDTAREAPVRPLQGAIGRRMAEPKSPNAGGLRFAVAPPSAGKTHARRS
SIO_010081: MNOD_RS41045
subclass of: SO_0000673
so part of: MNOD_RS41045
location: 7829..8557
location: region:7829-8557:1
so has part: feature:7829-8557:1:exon

WP_012631426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7829-8557:1:exon

MNOD_RS41050
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41050
old locus tag: Mnod_7738
so part of: sequence
location: complement(8862..9122)
location: region:8862-9122:-1
so has part: feature:8862-9122:-1:exon
subclass of: SO_0000010

position:8862:-1
position: 8862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9122:-1
position: 9122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8862-9122:-1:exon

MNOD_RS41050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41050
old locus tag: Mnod_7738
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012290082.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALTARPVRPSPKPADDVDAFISKGGTVPAASAGDKPGKAAQHPLKFPPGDLFERLERAREASAVKLPRNTWILQAIAEKLERDGG
SIO_010081: MNOD_RS41050
subclass of: SO_0000673
so part of: MNOD_RS41050
location: complement(8862..9122)
location: region:8862-9122:-1
so has part: feature:8862-9122:-1:exon

WP_012631427.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8862-9122:-1:exon

MNOD_RS41055
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41055
old locus tag: Mnod_7739
so part of: sequence
location: complement(9138..9800)
location: region:9138-9800:-1
so has part: feature:9138-9800:-1:exon
subclass of: SO_0000010

position:9138:-1
position: 9138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9800:-1
position: 9800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9138-9800:-1:exon

MNOD_RS41055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41055
old locus tag: Mnod_7739
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012290081.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MITVVGGTKGGSGKSTVATNLAIMLAAAGRDVLLVDADDQETSTDFTNLREATRPGGAGYTCVALTGPAVRTGVQRLAPKHAHVIIDTGGRDTVSQRAALSICQTYLVPFAPRSFDVWTLDKVAELVEEARAINPSLRALAFINRADARGNENAEAADLIRTKPALEFVPTALGTRKAYAHAAAAGLSVTELRPQDPKASEEIAALFGYLFDIPAISDRH
SIO_010081: MNOD_RS41055
subclass of: SO_0000673
so part of: MNOD_RS41055
location: complement(9138..9800)
location: region:9138-9800:-1
so has part: feature:9138-9800:-1:exon

WP_012631428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9138-9800:-1:exon

MNOD_RS41060
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41060
old locus tag: Mnod_7740
so part of: sequence
location: complement(9914..10720)
location: region:9914-10720:-1
so has part: feature:9914-10720:-1:exon
subclass of: SO_0000010

position:9914:-1
position: 9914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10720:-1
position: 10720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9914-10720:-1:exon

MNOD_RS41060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41060
old locus tag: Mnod_7740
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006334038.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TIGR02391 family protein
translation: MAEKCFKQSELEAIAAALGDTSQGLSHPDIAFLLSSCEMRDPSPSLSKRRRLYNAFAEHQNATQSRRAVLAFIRRAMRPERFARAPESYEPLRANLNNALAFVGLEVDETGTLRSSDRAQTLTEAQRRARDLRADLAGRGIHPDVLAFCRAELLADNYFHAVLEATKSVADKLRSRTGLTDDGSVLVDRTLCGDPPLLAINALRSDSEKSEQRGFANLVKGAFGMFRNVTAHEARVRWTMQKSDAEDLLTLVSLIHRRLDTCWMPPRT
SIO_010081: MNOD_RS41060
subclass of: SO_0000673
so part of: MNOD_RS41060
location: complement(9914..10720)
location: region:9914-10720:-1
so has part: feature:9914-10720:-1:exon

WP_012631429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9914-10720:-1:exon

MNOD_RS41065
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41065
old locus tag: Mnod_7741
so part of: sequence
location: complement(10901..11257)
location: region:10901-11257:-1
so has part: feature:10901-11257:-1:exon
subclass of: SO_0000010

position:10901:-1
position: 10901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11257:-1
position: 11257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10901-11257:-1:exon

MNOD_RS41065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41065
old locus tag: Mnod_7741
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPIIMTPDGPAIWTDAGPLKLVRTAHGTAVQTPAGLVLISSALKAAFVVDEMVQTGDVEAAEGEPCRFTFKCSPAAFDILGSWGAEAEDEEDDGSEEPDNRDLPRSLSSCEAAPAVAA
SIO_010081: MNOD_RS41065
subclass of: SO_0000673
so part of: MNOD_RS41065
location: complement(10901..11257)
location: region:10901-11257:-1
so has part: feature:10901-11257:-1:exon

WP_012631430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10901-11257:-1:exon

MNOD_RS41070
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41070
old locus tag: Mnod_7742
so part of: sequence
location: complement(11565..11765)
location: region:11565-11765:-1
so has part: feature:11565-11765:-1:exon
subclass of: SO_0000010

position:11565:-1
position: 11565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11765:-1
position: 11765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11565-11765:-1:exon

MNOD_RS41070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41070
old locus tag: Mnod_7742
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALPAKRPPGRPPGRRPVAARHSVRLDGARQEALARLAERRGQSVHSLIIEAIDDLIRKPDGVGLS
SIO_010081: MNOD_RS41070
subclass of: SO_0000673
so part of: MNOD_RS41070
location: complement(11565..11765)
location: region:11565-11765:-1
so has part: feature:11565-11765:-1:exon

WP_157091888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11565-11765:-1:exon

MNOD_RS41075
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41075
old locus tag: Mnod_7743
so part of: sequence
location: 12341..13129
location: region:12341-13129:1
so has part: feature:12341-13129:1:exon
subclass of: SO_0000010

position:12341:1
position: 12341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13129:1
position: 13129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12341-13129:1:exon

MNOD_RS41075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41075
old locus tag: Mnod_7743
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKIASLISHERLATFVAIAGTDRDAIELHRLAMALNGSLSPVLGVIEVALRNATCERLRATFGVPDWLTNPPPPFAWHGEERNAIRRATGQAQRAVYTKKSSADKKALDAIAFPGGVPAGLSHEARSKARQRAIQPTFGQVIAQLTLYFWKRLLSADYDATLWQRSLKRMFPDKSLSRGVVAAQLEVLYQARNRIAHHEPIYGARLAKILQAIEFVAQRFESNHPDPNGILAQMLASYMPGLQHDAQVLEALIARFRVPLT
SIO_010081: MNOD_RS41075
subclass of: SO_0000673
so part of: MNOD_RS41075
location: 12341..13129
location: region:12341-13129:1
so has part: feature:12341-13129:1:exon

WP_050783660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12341-13129:1:exon

MNOD_RS41080
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41080
old locus tag: Mnod_7744
pseudo: true
so part of: sequence
location: complement(13126..>13341)
location: region:13126-13341:-1
so has part: feature:13126-13341:-1:exon
subclass of: SO_0000010

position:13126:-1
position: 13126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13341:-1
position: 13341
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13126-13341:-1:exon

MNOD_RS41080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41080
old locus tag: Mnod_7744
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018264047.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
SIO_010081: MNOD_RS41080
subclass of: SO_0000673
so part of: MNOD_RS41080
location: complement(13126..>13341)
location: region:13126-13341:-1
so has part: feature:13126-13341:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13126-13341:-1:exon

MNOD_RS45595
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS45595
old locus tag: Mnod_7745
so part of: sequence
location: complement(13469..14413)
location: region:13469-14413:-1
so has part: feature:13469-14413:-1:exon
subclass of: SO_0000010

position:13469:-1
position: 13469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14413:-1
position: 14413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13469-14413:-1:exon

MNOD_RS45595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS45595
old locus tag: Mnod_7745
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAAAAWDVISLACAPFGAALAVYKMAAIFKHSQRLNEAILEWLTNSNPRSTVHSQYLLIRKQLFGDKFTSWRRSTAIIIVFCMVLCFLVVSYLFTPDHTVDFFSVAVLRYMMLYSYAWINFPVTSTFILIIAFIISHVSFIIFDYITLRVYSFGNSLSLYLGLILISYLIIGTITIFLACFTPYVLLPSTIPDNFHDLIASSLTRIPDTIAEIQKPRNPDDYGDMVARFTLTGILGTGAMCFAAVFISTVFNLVYAFALGVLKADYILRSQYVWNQDQILKEPVEYISAAMSIIVFIIFMLGSVAYGLIFLVSD
SIO_010081: MNOD_RS45595
subclass of: SO_0000673
so part of: MNOD_RS45595
location: complement(13469..14413)
location: region:13469-14413:-1
so has part: feature:13469-14413:-1:exon

WP_012631433.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13469-14413:-1:exon

MNOD_RS45600
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS45600
old locus tag: Mnod_7746
so part of: sequence
location: 14863..15516
location: region:14863-15516:1
so has part: feature:14863-15516:1:exon
subclass of: SO_0000010

position:14863:1
position: 14863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15516:1
position: 15516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14863-15516:1:exon

MNOD_RS45600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS45600
old locus tag: Mnod_7746
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015007838.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTSFVAYFRVSTTRQGRSGLGLDAQRIAVERYTGGRGELIAEYTEVESGRKDGRPQLAAAIDLCRKRKAVLVIAKLDRLARNVAFISNLMESRVEFIAADMPEAQRVTVHLIAAIAEHEREVISKRTKEALAAAKARGVRLGNPRPNPAKATSQAAERAAQFRVAILPLVQSFKAGGRSLRAIAADLNARQVPTLNGGRWHAATVSSILKKSVQTQM
SIO_010081: MNOD_RS45600
subclass of: SO_0000673
so part of: MNOD_RS45600
location: 14863..15516
location: region:14863-15516:1
so has part: feature:14863-15516:1:exon

WP_012631434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14863-15516:1:exon

MNOD_RS45605
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS45605
old locus tag: Mnod_7747
so part of: sequence
location: 15545..17230
location: region:15545-17230:1
so has part: feature:15545-17230:1:exon
subclass of: SO_0000010

position:15545:1
position: 15545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17230:1
position: 17230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15545-17230:1:exon

MNOD_RS45605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS45605
old locus tag: Mnod_7747
inference: COORDINATES: protein motif:HMM:NF015210.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF262 domain-containing protein
translation: MTTFIQTAHELVGDLLSRQIHYHVPEHQRDYSWTEDEVSQFWEDIWEGSKRDSEHFLGPAVVRTIPPGHSYEIIDGQQRLTTTLILLAALRNSYLERGDSLGGTLQSTYFGHIDRRTRETIPKFTMNSTNNETFKNFIAEIKPMKDFENAEKNRKTKLSNKRLLQAYIFLKGKVDELTMASGTFSSAPLADIEDFLKEKLSVIQIVVSDEADAFALFETLNERGIELSILDLLKNHFFKVADKSRETVKQRWFETLSNLDENVGSKFIRHYWVSKNGRVQAGRLYRVLRDSAKNKADVLRLSEDLLHDSRLYSALTVSDDELWDGRPQQVRDDISTLKLLNASQCLPVLLAAHRKMEDGHFDRVLHLMMVMAVRYSLICQYRTGALEIAYADIAHKISSGELRRAGAVRRELSDLYPRDDDFRSHFCSREIKTAKHARFLLRALDATSTGGIISPVSDAASVNLEHIAPKTKNQHWSIGDLKGESYEGWVYRIGNQALLEKTLNHSIGNGSFTEKKVAFSQSQIALTKPVADRDSWTTAEIQARQVQLADLAVKCWRYDVD
SIO_010081: MNOD_RS45605
subclass of: SO_0000673
so part of: MNOD_RS45605
location: 15545..17230
location: region:15545-17230:1
so has part: feature:15545-17230:1:exon

WP_012631435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15545-17230:1:exon

MNOD_RS48645
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS48645
so part of: sequence
location: complement(17920..18063)
location: region:17920-18063:-1
so has part: feature:17920-18063:-1:exon
subclass of: SO_0000010

position:17920:-1
position: 17920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18063:-1
position: 18063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17920-18063:-1:exon

MNOD_RS48645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS48645
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPAFARTIVRALAEAELAIQAARRLQELAAANLPSAESFHIRPLPPA
SIO_010081: MNOD_RS48645
subclass of: SO_0000673
so part of: MNOD_RS48645
location: complement(17920..18063)
location: region:17920-18063:-1
so has part: feature:17920-18063:-1:exon

WP_157091890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17920-18063:-1:exon

MNOD_RS41085
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41085
old locus tag: Mnod_7749
so part of: sequence
location: complement(18278..19204)
location: region:18278-19204:-1
so has part: feature:18278-19204:-1:exon
subclass of: SO_0000010

position:18278:-1
position: 18278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19204:-1
position: 19204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18278-19204:-1:exon

MNOD_RS41085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41085
old locus tag: Mnod_7749
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012290095.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKSNLRTVPTITLRNGADVIADLESKHRAAEGGLATAKAALQAATAKYEAALGEGRDAAIAARQVRTDAEVDLDIARRAVETLARQVADAHEALRLAEIEHKRSEAERLRSVFEETARRGLGVMSVEGRAIIRAWAEAELAIQAARQAQGAGGPHIPSAEEFRSVPRGHRKEIRRTRVTRWLRPGTREPYPDAIEQMIVRKGDRGWLRNTSMTGGGQEITERGEFDRITYARPTSPIYMPLLIESLCVPALVGGQVPGWMPTEALDPRTILARLADLEHAPAPKEPEQETVDVFVHPVGAEPAEASD
SIO_010081: MNOD_RS41085
subclass of: SO_0000673
so part of: MNOD_RS41085
location: complement(18278..19204)
location: region:18278-19204:-1
so has part: feature:18278-19204:-1:exon

WP_012631436.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18278-19204:-1:exon

MNOD_RS41090
type: Gene
subclass of: SO_0000704
RO_0002162: 460265
locus tag: MNOD_RS41090
old locus tag: Mnod_7750
so part of: sequence
location: complement(19263..19703)
location: region:19263-19703:-1
so has part: feature:19263-19703:-1:exon
subclass of: SO_0000010

position:19263:-1
position: 19263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19703:-1
position: 19703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19263-19703:-1:exon

MNOD_RS41090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 460265
locus tag: MNOD_RS41090
old locus tag: Mnod_7750
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTLTPPSHGGSSANTAGWPINEERNARAMAFHQTGKLTTPGAAHPPSTASRNAPAEQPFAVTVTAGLQPGGRGEAAAAARPVVHDAGRTPAERSFAELVTADLQKQERSAGAARLITGEAVRVSAEQSFADVVTADLRSAPRPGRA
SIO_010081: MNOD_RS41090
subclass of: SO_0000673
so part of: MNOD_RS41090
location: complement(19263..19703)
location: region:19263-19703:-1
so has part: feature:19263-19703:-1:exon

WP_012631437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19263-19703:-1:exon