Natranaerobius thermophilus JW/NM-WN-LF plasmid pNTHE01, complete sequence.
type: Entry
definition: Natranaerobius thermophilus JW/NM-WN-LF plasmid pNTHE01, complete sequence.
sequence version: NC_010715.1
sequence date: 2023-02-22
sequence: sequence
division: CON
label: NC_010715.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598430
keyword: RefSeq
source: Natranaerobius thermophilus JW/NM-WN-LF
organism: Natranaerobius thermophilus JW/NM-WN-LF
taxonomy: Bacteria; Bacillota; Clostridia; Natranaerobiales; Natranaerobiaceae; Natranaerobius.
reference: 1
references: 21642468
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001035.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4044106\nSource DNA and bacteria available from Juergen Wiegel\n(jwiegel@uga.edu)\nContacts: Juergen Wiegel (jwiegel@uga.edu)\n David Bruce (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/22/2023 13:41:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,021\nCDSs (total) :: 2,954\nGenes (coding) :: 2,933\nCDSs (with protein) :: 2,933\nGenes (RNA) :: 67\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 4\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 21\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 3 of 21\nPseudo Genes (incomplete) :: 16 of 21\nPseudo Genes (inter…

sequence
subclass of: SO_0000155
sequence length: 17207
topology: circular
so has quality: SO_0000988
location: 1..17207
location: region:1-17207:1
RO_0002162: 457570

NC_010715
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598430
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of the anaerobic, halophilic alkalithermophile Natranaerobius thermophilus JW/NM-WN-LF
author: Zhao, B.
author: Mesbah, N.M.
author: Dalin, E.
author: Goodwin, L.
author: Nolan, M.
author: Pitluck, S.
author: Chertkov, O.
author: Brettin, T.S.
author: Han, J.
author: Larimer, F.W.
author: Land, M.L.
author: Hauser, L.
author: Kyrpides, N.
author: Wiegel, J.
journal: J Bacteriol
volume: 193
issue: 15
pages: 4023-4024
year: 2011
pubmed: 21642468

21642468
type: PubMed
SIO_000068: pubmed

2
title: Complete sequence of plasmid1 of Natranaerobius thermophilus JW/NM-WN-LF
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Chertkov, O.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Kuske, C.R.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Lykidis, A.
author: Mesbah, N.M.
author: Wiegel, J.
journal: Unpublished

3
title: Direct Submission
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Chertkov, O.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Kuske, C.R.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Lykidis, A.
author: Mesbah, N.M.
author: Wiegel, J.
journal: Submitted (04-APR-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17207:1
position: 17207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17207:1:source
so part of: sequence
organism: Natranaerobius thermophilus JW/NM-WN-LF
mol type: genomic DNA
strain: JW/NM-WN-LF
type material: type strain of Natranaerobius thermophilus
plasmid: pNTHE01
note: type strain of Natranaerobius thermophilus

457570
type: Taxonomy
SIO_000068: taxonomy

NTHER_RS16430
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS16430
so part of: sequence
location: complement(115..477)
location: region:115-477:-1
so has part: feature:115-477:-1:exon
subclass of: SO_0000010

position:115:-1
position: 115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:477:-1
position: 477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:115-477:-1:exon

NTHER_RS16430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS16430
inference: COORDINATES: protein motif:HMM:NF037202.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helicase
translation: MKGDPDDPETYEVNKIRFGKKDKKNDKSVIVYNDKIKLKNIPLEVYEYQVGGKSPIEWVIDRYQVKKDKKSGIVNDPNKWLEEHDDPRYIVDLIKRLVTLSLETQRIVNQLPDLDIDESN
SIO_010081: NTHER_RS16430
subclass of: SO_0000673
so part of: NTHER_RS16430
location: complement(115..477)
location: region:115-477:-1
so has part: feature:115-477:-1:exon

WP_158438318.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:115-477:-1:exon

NTHER_RS16315
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS16315
so part of: sequence
location: complement(461..1318)
location: region:461-1318:-1
so has part: feature:461-1318:-1:exon
subclass of: SO_0000010

position:461:-1
position: 461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1318:-1
position: 1318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461-1318:-1:exon

NTHER_RS16315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS16315
inference: COORDINATES: protein motif:HMM:NF037202.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFKTFSAGLKTNRDTWVYNFSIEELDNNVSSMIKEFNEHVSLVNNNDITSNNLQDTVNNDPTKISWSGDLKKKLLKGEYYNQEYGNTLISTYRPFVKEWVYFSNLFNNSIYLLPILFPEPNIDNLVITIQAPGGTKDFSVLMVDNIPDLHLVGDTQAFPFYIYKTDKGSLFKEENLDNGSYITAPSGEHYICQKNVTDWALNEYRKRYGLDVTKEDIFYYVYGLLHSPDYRERYKHNLKRTLPHIPFVTSTEDFRSFSDAGRRLAELHLYYENLPLFDQINKRRP
SIO_010081: NTHER_RS16315
subclass of: SO_0000673
so part of: NTHER_RS16315
location: complement(461..1318)
location: region:461-1318:-1
so has part: feature:461-1318:-1:exon

WP_274377076.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:461-1318:-1:exon

NTHER_RS14835
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14835
old locus tag: Nther_2936
so part of: sequence
location: complement(1728..4874)
location: region:1728-4874:-1
so has part: feature:1728-4874:-1:exon
subclass of: SO_0000010

position:1728:-1
position: 1728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4874:-1
position: 4874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1728-4874:-1:exon

NTHER_RS14835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14835
old locus tag: Nther_2936
inference: COORDINATES: protein motif:HMM:NF016724.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase family protein
translation: MTTAQQLLNRLNEIARNTREQGDLFERFAVAYLKHDEYYGQLFSNIWRWSDWPGRGNETDTGIDIVAEEKETGKLWAIQAKFHEGQLSLNDISTFLALSGQERFSKRMLITTSSLSSNAESALNNQDKPVVVLTLSDLLNSSIDWEQFTWSDPENITLKERKDLYPFQKEAVDSTIKGFKRTNRGKLIMPPGSGKTFVSLKIAEKQEIAGPGGFVFFLAPSIALVEQTLRAWLSDTETPIKVFAVTSDHTVGQEDEYIDRTNVLTIPPTTNAEELANGVQNVSEDEMAVVVSTYHSIDVVSQAQDLGLPEFDVIFADEAHRTTGISDNQDASYYHKVHDEDFIKGSKRLYMTATPRVFVPRLREKVEEQGYEYFTMDDEDTYGEEFFRYGFGQAVDEGFLSDYKVIVFTVDEADVQRKLFSFLNQEDSPEVEEASKIIGVWNALSGRIKDENINAPLKRAVSFTNRIADSKKFASKFVNTIEAYQENIDEDVEDDSCNFDIRHVDGSTTATNRKLLLDWLREEPDPGESKVLSNAQVLKEGIDVPSLDAIVFLRPKRSTVDIVQAVGRAMRKAPGKEYGYVVIPVLVDPEEDAAEQLDNNEEFKKVWQILGALRSIDDRFDAEVRELSIKRGQTGETGESQGSDEDDSKLEVQSDKQTQLTMEDFTGRLFDAILGKLVERVGDRGYLETWAKDVAAASTRIERHINEALESETEYGQKAQNAFYEFLSALRNVINPTVTEEDARSMLVQHIITKPIFDAVFGEYEFLQQNPVSLSFESVADVFEVFVRKETRALDSFYRLVEVRAKGLDKESERQEFLRKLYDTFFKIAFPKTAELLGIVYTPVEAVNFLVKSADAALQDEFGQSLEDEDVVILEPFSGTGTFLAQLMHHISPEGLQRKYNDGEIWGNEILLLPYYIALANIESTYYEITGEYKHFDNLLLVDSFQLMEDRDKPQVELFPEQYAEQMEKQKEAKINVIISNPPWFAWQDDENRGIQSTDYELLDERIEESYAANSSARLKISLFDSYIRAIRMATDRIKGQRNYCFCN
SIO_010081: NTHER_RS14835
subclass of: SO_0000673
so part of: NTHER_RS14835
location: complement(1728..4874)
location: region:1728-4874:-1
so has part: feature:1728-4874:-1:exon

WP_052292022.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1728-4874:-1:exon

NTHER_RS14840
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14840
old locus tag: Nther_2937
so part of: sequence
location: complement(4962..5192)
location: region:4962-5192:-1
so has part: feature:4962-5192:-1:exon
subclass of: SO_0000010

position:4962:-1
position: 4962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5192:-1
position: 5192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4962-5192:-1:exon

NTHER_RS14840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14840
old locus tag: Nther_2937
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKRKAINQLLEDSDSNTKIQEYSEEEEGVNNNKTKKKATFELDSDLHTQLKIYAARQNKKMVDVVEEALKEYMKD
SIO_010081: NTHER_RS14840
subclass of: SO_0000673
so part of: NTHER_RS14840
location: complement(4962..5192)
location: region:4962-5192:-1
so has part: feature:4962-5192:-1:exon

WP_012443508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4962-5192:-1:exon

NTHER_RS14845
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14845
old locus tag: Nther_2938
so part of: sequence
location: complement(5170..5946)
location: region:5170-5946:-1
so has part: feature:5170-5946:-1:exon
subclass of: SO_0000010

position:5170:-1
position: 5170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5946:-1
position: 5946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5170-5946:-1:exon

NTHER_RS14845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14845
old locus tag: Nther_2938
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015759710.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MGTTISFGIQKGGVGKTTTTAITSYILSKEHKTLAVDFDSQGNLTRFLTQQNIYNFTEKTVLEAVKAKDPRPYIYKISDNLHILPAEDFLATFSRFLYQEYQGNKALLLKETLDVVREQYNYITIDLPPHLGDQTINGLSASDYAVVLLQSEPFALDALDRYLEVLMGVQKKANSNMKLIGILSTMLDSRAAIDSEIINKARKDYEDVVFETIIRRRNRIKEFSLFGIEERTKVDREALKYYKNFTKELISRVQKKGN
SIO_010081: NTHER_RS14845
subclass of: SO_0000673
so part of: NTHER_RS14845
location: complement(5170..5946)
location: region:5170-5946:-1
so has part: feature:5170-5946:-1:exon

WP_012443509.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5170-5946:-1:exon

NTHER_RS14850
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14850
old locus tag: Nther_2939
so part of: sequence
location: 6156..6617
location: region:6156-6617:1
so has part: feature:6156-6617:1:exon
subclass of: SO_0000010

position:6156:1
position: 6156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6617:1
position: 6617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6156-6617:1:exon

NTHER_RS14850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14850
old locus tag: Nther_2939
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIIKEKAELYKQSREEVNRKIEVWENEIFDLVENKLQEIVSEIGSIEGLKVTVGESPMARSVRLTFGVGPYGKVDDEAFIKRGGSLLFIPKLNGGILVSTSSPSIESDERILVEEEKKPLENYNDPNKITEDKVEKHVEEFFDDLINWWDTL
SIO_010081: NTHER_RS14850
subclass of: SO_0000673
so part of: NTHER_RS14850
location: 6156..6617
location: region:6156-6617:1
so has part: feature:6156-6617:1:exon

WP_012443510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6156-6617:1:exon

NTHER_RS14855
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14855
old locus tag: Nther_2940
so part of: sequence
location: 6819..7046
location: region:6819-7046:1
so has part: feature:6819-7046:1:exon
subclass of: SO_0000010

position:6819:1
position: 6819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7046:1
position: 7046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6819-7046:1:exon

NTHER_RS14855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14855
old locus tag: Nther_2940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012745108.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MRYPNCVSLHRQKKGITQEQLAREVDVSLNTIKNVEHGKTNPRVTTAIRISQVIGISVEELFAPKDQFISLKSER
SIO_010081: NTHER_RS14855
subclass of: SO_0000673
so part of: NTHER_RS14855
location: 6819..7046
location: region:6819-7046:1
so has part: feature:6819-7046:1:exon

WP_012443511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6819-7046:1:exon

NTHER_RS14860
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14860
old locus tag: Nther_2941
so part of: sequence
location: complement(7565..9490)
location: region:7565-9490:-1
so has part: feature:7565-9490:-1:exon
subclass of: SO_0000010

position:7565:-1
position: 7565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9490:-1
position: 9490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7565-9490:-1:exon

NTHER_RS14860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14860
old locus tag: Nther_2941
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQQGEEKIKQLKEFLAKFHGQDGEVYFQMVGDDHNPQIPKKDFNTGKLKEPKVTVDQLENVWDRLCNYHKQGYKVYFKLNSGGYLDKDIYNITAHCVDIDFHHEDDPEELEKKKNEKIEMLKNLPLPPSIIVVSPRGVHAYWLMQKQEDKTPKQIVQEINQFKYVQDALAAYFNSCTGVNLLCQGMRLPSFKGKIIETSDRRYTQEELLRHYYAEPKPKKKKEKESNQKITNDIPSATPNTIDKPKTSQVAEEVYYNYHDFFEVAKQKDLREYIGLNVPLNENFSCIYHDDQKPSARMGISEKGHYRYRCFADGCGANNPYGLTIIDLMQLNGITDFSQIIRTISETFNMKLISNEWCQKEKEKYIANMNFIKEEMTRENMYHTYQLFRHAIPIINEMLTMGITKVTPSLCSKDGLSMFFISNRYIAKRTKKWLERVNQYVNLLIWLGVFRLEQPSSNSKIYQDSVKRAEESGKEKAKEIGYKKEFSYNVISYYSMPNLYEIKQELEEKAEQLRKKYRYSISAMSEAYVANHQYPTEEIYAAEFTPNFKKSAMIRDKLLKKAKEQLGHKGYTCWQNFIRLKVKGKRVPREQVKIEFKRIEPILINELGCVKRKANKTLKQMYQLDGYPWIIVTPEVNQRVG
SIO_010081: NTHER_RS14860
subclass of: SO_0000673
so part of: NTHER_RS14860
location: complement(7565..9490)
location: region:7565-9490:-1
so has part: feature:7565-9490:-1:exon

WP_012443512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7565-9490:-1:exon

NTHER_RS14865
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14865
old locus tag: Nther_2942
so part of: sequence
location: complement(9737..10216)
location: region:9737-10216:-1
so has part: feature:9737-10216:-1:exon
subclass of: SO_0000010

position:9737:-1
position: 9737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10216:-1
position: 10216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9737-10216:-1:exon

NTHER_RS14865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14865
old locus tag: Nther_2942
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDELNQENEQLLQKNRQLEVELSEQESRLNKQLQNQKEIERQKNVELKELRDRLQKTENDCIGYKKAYEKWREKAKELSGEKEEDQGKWHDGMMRLEFKDGYAIGVYMLGISENQKPQDAERFAQMQIEEMQGVKELIGVTWSQGHGWTMIVRFEKNVF
SIO_010081: NTHER_RS14865
subclass of: SO_0000673
so part of: NTHER_RS14865
location: complement(9737..10216)
location: region:9737-10216:-1
so has part: feature:9737-10216:-1:exon

WP_012443513.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9737-10216:-1:exon

NTHER_RS14870
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14870
old locus tag: Nther_2943
so part of: sequence
location: complement(10337..10900)
location: region:10337-10900:-1
so has part: feature:10337-10900:-1:exon
subclass of: SO_0000010

position:10337:-1
position: 10337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10900:-1
position: 10900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10337-10900:-1:exon

NTHER_RS14870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14870
old locus tag: Nther_2943
inference: COORDINATES: protein motif:HMM:NF024803.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MEDHITLSEAEQKTGVPARTIRRYIQKHGQYIPFEKQDRKYMIAEYALPMITKIRELYDQGMTVAQVDQKLDNDGDSMLVEVDRVTESSAMDGKKLKEFFQAVLNEHDKKLDQKVKQSEERILNQIQEEQRQIYNSNQLDHQKTRKKLEEEIANIEEIKKLNKTIEELRNEMKELKKPWWKKIFRKD
SIO_010081: NTHER_RS14870
subclass of: SO_0000673
so part of: NTHER_RS14870
location: complement(10337..10900)
location: region:10337-10900:-1
so has part: feature:10337-10900:-1:exon

WP_041368135.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10337-10900:-1:exon

NTHER_RS14875
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14875
old locus tag: Nther_2944
so part of: sequence
location: complement(11002..11481)
location: region:11002-11481:-1
so has part: feature:11002-11481:-1:exon
subclass of: SO_0000010

position:11002:-1
position: 11002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11481:-1
position: 11481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11002-11481:-1:exon

NTHER_RS14875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14875
old locus tag: Nther_2944
inference: COORDINATES: protein motif:HMM:NF024139.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MNEKMLTVEEVAEQAGVHVESVRRWIRSGRLPASLPSRYHGYQVKEKDLQDFLQKKNKVQQKGQIEAEQVLRSLADAYNKYQQDEYLRIAYGVAELSGLLPDFQKRWSSGQSDFEIDRLLEQRETVLRNLEKNLGEKTRAKEEKTLKKIEGKLILKHYS
SIO_010081: NTHER_RS14875
subclass of: SO_0000673
so part of: NTHER_RS14875
location: complement(11002..11481)
location: region:11002-11481:-1
so has part: feature:11002-11481:-1:exon

WP_012443515.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11002-11481:-1:exon

NTHER_RS14880
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14880
old locus tag: Nther_2945
so part of: sequence
location: complement(11561..12511)
location: region:11561-12511:-1
so has part: feature:11561-12511:-1:exon
subclass of: SO_0000010

position:11561:-1
position: 11561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12511:-1
position: 12511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11561-12511:-1:exon

NTHER_RS14880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14880
old locus tag: Nther_2945
inference: COORDINATES: protein motif:HMM:NF024244.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: integrase domain-containing protein
translation: MSNPLEQQLEKLYRHCRQGSKGYRIDSVKRAKEFARYIHDEYKVQNFKNIKDQHVASFVKYQQDKGNSDATIKNKLSSIRFFHDQVSNPRHQISDNKTLQEKYDFKFNKTPEIKEEVNRAWHEKEVDKAVEVATEMGREDVKDAITLAKNTGLRISEVTCMERRQAEQALKTGVMPVDRGTKGGRERVVPINTNSEREREVREVLEKRLSETERGGRLFTEYDQKAHQATRSIQDFLINNQDKFATVEGIELRGSTGDGSTNLNFHGLRYCYAQERKDELLNEHLGDRQKAAEDLSLEMGHNRTDVLRTYLAGESL
SIO_010081: NTHER_RS14880
subclass of: SO_0000673
so part of: NTHER_RS14880
location: complement(11561..12511)
location: region:11561-12511:-1
so has part: feature:11561-12511:-1:exon

WP_012443516.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11561-12511:-1:exon

NTHER_RS14885
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14885
old locus tag: Nther_2946
so part of: sequence
location: complement(13634..14074)
location: region:13634-14074:-1
so has part: feature:13634-14074:-1:exon
subclass of: SO_0000010

position:13634:-1
position: 13634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14074:-1
position: 14074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13634-14074:-1:exon

NTHER_RS14885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14885
old locus tag: Nther_2946
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGEQEKKTKACDSCKEEIKQDASACPYCGEKQVSKGAVVGCLVIIALIVIGVAIFLFNIIGNGEGVAILQAVDFAEEAIGYDMSYDHDDLVVNEIHEDYYQVNGKISRVHDNKHFRMQSQVEFLEDKDKWRLRYLNIDGDVVHDSR
SIO_010081: NTHER_RS14885
subclass of: SO_0000673
so part of: NTHER_RS14885
location: complement(13634..14074)
location: region:13634-14074:-1
so has part: feature:13634-14074:-1:exon

WP_012443517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13634-14074:-1:exon

NTHER_RS14890
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14890
old locus tag: Nther_2947
so part of: sequence
location: complement(14100..14576)
location: region:14100-14576:-1
so has part: feature:14100-14576:-1:exon
subclass of: SO_0000010

position:14100:-1
position: 14100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14576:-1
position: 14576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14100-14576:-1:exon

NTHER_RS14890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14890
old locus tag: Nther_2947
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKKTQLILVGIILILGMTVHAIYEELNDKQEKTDNDKEQKEEVQVSITEEVKTETTKIIEDYNEVVDTTIEKEANDITLYLVIHREADAKQLGEDFIRSFASNASIHGEGDIEGPDSESLGGIWEHYSGDIYIGYDADPFLHGVIQDTRDNIRWFEI
SIO_010081: NTHER_RS14890
subclass of: SO_0000673
so part of: NTHER_RS14890
location: complement(14100..14576)
location: region:14100-14576:-1
so has part: feature:14100-14576:-1:exon

WP_012443518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14100-14576:-1:exon

NTHER_RS14895
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14895
old locus tag: Nther_2948
so part of: sequence
location: complement(14609..14797)
location: region:14609-14797:-1
so has part: feature:14609-14797:-1:exon
subclass of: SO_0000010

position:14609:-1
position: 14609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14797:-1
position: 14797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14609-14797:-1:exon

NTHER_RS14895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14895
old locus tag: Nther_2948
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKEMYIKGDTYEKQKSCFTELGITDYEGYFVSEYEFIGQEEVVQYYGYSGDTWGEFIISVEN
SIO_010081: NTHER_RS14895
subclass of: SO_0000673
so part of: NTHER_RS14895
location: complement(14609..14797)
location: region:14609-14797:-1
so has part: feature:14609-14797:-1:exon

WP_012443519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14609-14797:-1:exon

NTHER_RS14900
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14900
old locus tag: Nther_2949
so part of: sequence
location: complement(14951..15559)
location: region:14951-15559:-1
so has part: feature:14951-15559:-1:exon
subclass of: SO_0000010

position:14951:-1
position: 14951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15559:-1
position: 15559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14951-15559:-1:exon

NTHER_RS14900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14900
old locus tag: Nther_2949
inference: COORDINATES: protein motif:HMM:NF012464.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MNNYYGYIRVSTDEQNESRQLQALKQFEKDHEVKLTIFMDKLTGKCFSEREQYQALKKVVAPGDVIVIKELDRLGRTYDQIKQELTEFRNINVQVVILDLPTFTDVKDQKLGKLLNNLMVELLSYFAEKEHERITERVREGVRQAQKEGKPIGRPKRKLPKNFSKWYPEWKNGDMTAVEFARIMGVSKPTIYRYIRHYENHN
SIO_010081: NTHER_RS14900
subclass of: SO_0000673
so part of: NTHER_RS14900
location: complement(14951..15559)
location: region:14951-15559:-1
so has part: feature:14951-15559:-1:exon

WP_012443520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14951-15559:-1:exon

NTHER_RS14905
type: Gene
subclass of: SO_0000704
RO_0002162: 457570
locus tag: NTHER_RS14905
old locus tag: Nther_2950
so part of: sequence
location: complement(16034..16729)
location: region:16034-16729:-1
so has part: feature:16034-16729:-1:exon
subclass of: SO_0000010

position:16034:-1
position: 16034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16729:-1
position: 16729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16034-16729:-1:exon

NTHER_RS14905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 457570
locus tag: NTHER_RS14905
old locus tag: Nther_2950
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDLKEAVAKAKSSKKKRNKPIIILVLLLVLSIGMNLYLAYPYIYTYFFGRPLIGFEYLQSEMSFFEGALTDLIDEVENDQSGREQDNTDYETHRELWSDVVNHSRNIQRVAGSMNNDPTFLLSGISRDNLETLTGEIRNAHGLLAYYKVKAAARTDEEFFQFENDELEDLRAIAKVHELVVDKIEVNPAYDGNVGGEIIYEPDLFDSLKKPNEYIRNRRSEEKLYPGNIN
SIO_010081: NTHER_RS14905
subclass of: SO_0000673
so part of: NTHER_RS14905
location: complement(16034..16729)
location: region:16034-16729:-1
so has part: feature:16034-16729:-1:exon

WP_012443521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16034-16729:-1:exon