Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' plasmid p74, complete sequence.
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'
Bacteria; Spirochaetota; Spirochaetia; Leptospirales; Leptospiraceae; Leptospira.
Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis
Submitted (24-JUL-2007) Unit de Biologie des Spirochetes, Institut Pasteur, 28 rue du docteur Roux, 75724 Paris Cedex 15, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP000788.1.\nGenomic DNA from the sequenced strain is available from our\nLaboratory: Mathieu Picardeau. Unit de Biologie des Spiroch tes,\nInstitut Pasteur, 28 rue du docteur Roux, 75724 Paris Cedex 15,\nFrance. Tel: 33 (1) 45 68 83 68. Fax: 33 (1) 40 61 30 01. E-mail:\nmpicard@pasteur.fr.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 11:39:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,716\nCDSs (total) :: 3,673\nGenes (coding) :: 3,658\nCDSs (with protein) :: 3,658\nGenes (RNA) :: 43\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 35\nncRNAs :: 2\nPseudo Genes (total) :: 15\nCDSs (without protein) :: 15\nPseudo Genes (ambiguous residues) :: 0 of 15\nPseudo Genes (frameshifted) :: 4 of 15\nPseudo Genes (incomplete) :: 9 of 15\nPseudo Genes (internal stop) :: 3 of 15\nPseudo Genes (multiple problems) :: 1 of 15\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002974819.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020777342.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_012476862.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002990338.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476756.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002974825.1
COORDINATES: similar to AA sequence:RefSeq:WP_015679054.1
COORDINATES: similar to AA sequence:RefSeq:WP_015683175.1
pyrimidine/purine nucleoside phosphorylase
COORDINATES: similar to AA sequence:RefSeq:WP_004788220.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476761.1
7TM diverse intracellular signaling domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004787974.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476763.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476764.1
heme ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012476765.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476766.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012476767.1
COORDINATES: similar to AA sequence:RefSeq:WP_020778275.1
COORDINATES: similar to AA sequence:RefSeq:WP_020768893.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476770.1
GO:0009338 - exodeoxyribonuclease V complex [Evidence IEA]
GO:0008854 - exodeoxyribonuclease V activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012476771.1
COORDINATES: protein motif:HMM:NF016169.2
COORDINATES: similar to AA sequence:RefSeq:WP_015679049.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012476774.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476775.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476776.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476777.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012476087.1
GO:0004803 - transposase activity [Evidence IEA]
ISNCY-like element ISLbi1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012476779.1
COORDINATES: similar to AA sequence:RefSeq:WP_002992042.1
LA_2444/LA_4059 family outer membrane protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002774824.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476783.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476784.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012476787.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476788.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476789.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476790.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476791.1
COORDINATES: similar to AA sequence:RefSeq:WP_002974848.1
COORDINATES: similar to AA sequence:RefSeq:WP_002974822.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476794.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015683154.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_012476796.1
1.7.17 : Formyl-tetrahydrofolate biosynthesis
1.5.3.9 : Riboflavin (Vitamin B2), FAD, FMN
COORDINATES: similar to AA sequence:RefSeq:WP_012476797.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476798.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012476799.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476800.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476801.1
GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
3.1.2.4.3 : Two-component regulatory systems (external signal)
COORDINATES: similar to AA sequence:RefSeq:WP_012476802.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012476803.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476804.1
1.6.6 : Osmoregulated periplasmic glucan
COORDINATES: similar to AA sequence:RefSeq:WP_002974823.1
COORDINATES: similar to AA sequence:RefSeq:WP_015679076.1
COORDINATES: similar to AA sequence:RefSeq:WP_015679047.1
glucans biosynthesis glucosyltransferase MdoH
COORDINATES: similar to AA sequence:RefSeq:WP_012476808.1
COORDINATES: similar to AA sequence:RefSeq:WP_015679055.1
COORDINATES: similar to AA sequence:RefSeq:WP_015679062.1