Psychrobacter urativorans strain R310.10B plasmid 3, complete sequence.
type: Entry
definition: Psychrobacter urativorans strain R310.10B plasmid 3, complete sequence.
sequence version: NZ_CP012709.1
sequence date: 2023-02-05
sequence: sequence
division: CON
label: NZ_CP012709.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04076494
keyword: RefSeq
source: Psychrobacter urativorans
organism: Psychrobacter urativorans
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Psychrobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP012709.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 19:09:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,519\nCDSs (total) :: 2,445\nGenes (coding) :: 2,418\nCDSs (with protein) :: 2,418\nGenes (RNA) :: 74\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 27\nCDSs (without protein) :: 27\nPseudo Genes (ambiguous residues) :: 0 of 27\nPseudo Genes (frameshifted) :: 10 of 27\nPseudo Genes (incomplete) :: 16 of 27\nPseudo Genes (internal stop) :: 10 of 27\nPseudo Genes (multiple problems) :: 7 of 27\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 24210
topology: circular
so has quality: SO_0000988
location: 1..24210
location: region:1-24210:1
RO_0002162: 45610

NZ_CP012709
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04076494
type: BioSample
SIO_000068: biosample

1
title: Complete genome of Psychrobacter urativorans R10.10B
author: See-Too, W.S.
author: Chan, K.G.
journal: Unpublished

2
title: Direct Submission
author: See-Too, W.S.
author: Chan, K.G.
journal: Submitted (21-SEP-2015) University of Malaya, Level 1, Microbiome Lab, HIR Building, Kuala Lumpur 50603, Malaysia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24210:1
position: 24210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24210:1:source
so part of: sequence
organism: Psychrobacter urativorans
mol type: genomic DNA
strain: R310.10B
isolation source: soil
plasmid: 3
country: Antarctica
collection date: 2010-12-15
collected by: Wah Seng See-Too

45610
type: Taxonomy
SIO_000068: taxonomy

AOC03_RS12115
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12115
old locus tag: AOC03_12095
so part of: sequence
location: complement(join(23038..24210,1..609))
location: region:1-24210:-1
so has part: feature:1-609:-1:exon
so has part: feature:23038-24210:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24210:-1
position: 24210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-609:-1:exon

position:609:-1
position: 609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:23038-24210:-1:exon

position:23038:-1
position: 23038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AOC03_RS12115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12115
old locus tag: AOC03_12095
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: glycosyltransferase family 2 protein
translation: MDINKTIDCNIRTLLINKGSVIINSVVLREIDNNERSANNNYFKPTGNLITSYVHKTAIDLNNSWPIKNGYHTSPIPLLSFQLMTRAEPAQMVIDTIESLLAIKADGDEILIIDNNHTNTELYEPLSRYCAGLDTRFKVRFYHVDRVDGFKSGALNLALQLMDQSCTHVVVVDSDYQALPHARTSIVAAIKRHSNHALLQFPQFYRDAGLADVHSELNHYFNHHLYRPFNRTRALSTGTYAVIYKEALVSLGGWSGASITEDAQMGVLMHRQGLHSQFIPEVIATGLLPTTLYDLITQRRRWIYGNMQVLSTYFSEITQPLTSFSSKEEKAQRSNYGLENKKLSIPRTAISRLGERTAYMRAHLSQLSAWVNFTGFFIVLHLCIILTTLGALITGADIDLHSLLTPLYAVYVSYTIFLGRRLWAYCHDRAPLNQQVNKDYIFSLRRQLRTWALHLNFWELGALSWLPVLWGRDKPFICTPKQKCIQTRQSLFTDNLKALPKLLLVLNVITAVLVAPFSPLYSPVLFSCSLIICLLKLWSAQVIFANYAYISEGVSLAIIKLSTPKKPASHCPALSTTTLISENLAKENKAFTP
SIO_010081: AOC03_RS12115
subclass of: SO_0000673
so part of: AOC03_RS12115
location: complement(join(23038..24210,1..609))
location: region:1-24210:-1
so has part: feature:1-609:-1:exon
so has part: feature:23038-24210:-1:exon

WP_084785922.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-609:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:23038-24210:-1:exon

AOC03_RS12120
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12120
old locus tag: AOC03_12100
so part of: sequence
location: complement(1154..1573)
location: region:1154-1573:-1
so has part: feature:1154-1573:-1:exon
subclass of: SO_0000010

position:1154:-1
position: 1154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1573:-1
position: 1573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1154-1573:-1:exon

AOC03_RS12120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12120
old locus tag: AOC03_12100
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKDNLDLLFYERNLIDNGLQIMMTQNVKISVQSTDRLTEMYYKDLNTWLFELLSKVKSSNLDAYVDLSFNEINMIKSGLTLLDELTYGKSLEETEKDKAQSYADYKLKMTALREKISNIESYKMYGAHEKQRINSRLLI
SIO_010081: AOC03_RS12120
subclass of: SO_0000673
so part of: AOC03_RS12120
location: complement(1154..1573)
location: region:1154-1573:-1
so has part: feature:1154-1573:-1:exon

WP_062536843.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1154-1573:-1:exon

AOC03_RS12125
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12125
old locus tag: AOC03_12105
pseudo: true
so part of: sequence
location: complement(<2000..2557)
location: region:2000-2557:-1
so has part: feature:2000-2557:-1:exon
subclass of: SO_0000010

position:2000:-1
position: 2000
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:2557:-1
position: 2557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2000-2557:-1:exon

AOC03_RS12125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12125
old locus tag: AOC03_12105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004810939.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF421 domain-containing protein
SIO_010081: AOC03_RS12125
subclass of: SO_0000673
so part of: AOC03_RS12125
location: complement(<2000..2557)
location: region:2000-2557:-1
so has part: feature:2000-2557:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2000-2557:-1:exon

AOC03_RS12130
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12130
old locus tag: AOC03_12110
so part of: sequence
location: complement(2834..4171)
location: region:2834-4171:-1
so has part: feature:2834-4171:-1:exon
subclass of: SO_0000010

position:2834:-1
position: 2834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4171:-1
position: 4171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2834-4171:-1:exon

AOC03_RS12130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12130
old locus tag: AOC03_12110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010197378.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SidA/IucD/PvdA family monooxygenase
translation: MIDLIGIGLGPFNLSLAALLSNQPNITSKFFEQKSEFNWHKGMIFPHTTLQVPFMADLVTLIDPTSRYTFLNYLHIQHRLLKFYFLEDFEIYRKEYNHYCQWVAGQLSSAVFDTTVIKVALQENGNGFTVTVCEHGKVQTYMAKNIVIGTGSQPVLPPFLQSIAERAPHHCMHTANFSENFNFNSIRRSDTLTKILVLGSGQSAAEVYQVLFDQQFDENKNVKFQLDWITRSAGFFPMEYTPLGLEHFSPAYIDYFYSLPPTTKARVVSKQDLLHKGMSANTIRAVYHQLYERSIANQQTYSSLMSNCELLNATLGSTRNDRLSLTLRQHEQDHKSTAEYDCVIAGTGYKDELPQCLNRLFSAIEYDEFGQPKINRDYTLVYQNHLANHNNNSKIFVQNKETHTHGVGAGDLGLGAYRAGCIVNELMGKPIYDTETLDIFQKFGK
SIO_010081: AOC03_RS12130
subclass of: SO_0000673
so part of: AOC03_RS12130
location: complement(2834..4171)
location: region:2834-4171:-1
so has part: feature:2834-4171:-1:exon

WP_062536846.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2834-4171:-1:exon

AOC03_RS12135
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12135
old locus tag: AOC03_12115
so part of: sequence
location: 4555..5211
location: region:4555-5211:1
so has part: feature:4555-5211:1:exon
subclass of: SO_0000010

position:4555:1
position: 4555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5211:1
position: 5211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4555-5211:1:exon

AOC03_RS12135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12135
old locus tag: AOC03_12115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020443515.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVDKSVNQNSIESALESLENTTESLSNDAVTGVEVLKGDTVVYEDGDFDDYNAVNDYETDTEDKSDTEDKSDTKDKSDTKDKSDTKDKSDTKDEHSLTINSIYQWATKLKDEVMSDKDSKSVSDEEDKHGTTIANVYKWVSKLKDELISETSGMTHDVSEKAVAMLLNRLLDGMNAELEAFDKKIEDSEEPVDNAEEERNKIVAKQEKYQGMIDQLES
SIO_010081: AOC03_RS12135
subclass of: SO_0000673
so part of: AOC03_RS12135
location: 4555..5211
location: region:4555-5211:1
so has part: feature:4555-5211:1:exon

WP_062536847.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4555-5211:1:exon

AOC03_RS12140
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12140
old locus tag: AOC03_12120
so part of: sequence
location: complement(5561..6076)
location: region:5561-6076:-1
so has part: feature:5561-6076:-1:exon
subclass of: SO_0000010

position:5561:-1
position: 5561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6076:-1
position: 6076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5561-6076:-1:exon

AOC03_RS12140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12140
old locus tag: AOC03_12120
inference: COORDINATES: protein motif:HMM:NF038291.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication DNA-binding protein
translation: MKISVTKAAKEWSISRTTIYQKINDGELSRTSDKKIDTSEMLRVFGEPVSKKRTEQSVNTTHKTCFNSQGVQERSELKHQLELEKLKNEHLRQQVSAQKDLIENYQKQIDQLQNNLEKANASIHDFTQIRLLEFKRFEILNEPRSEQNDNTLTANSSTTEKKKKWWVFGKL
SIO_010081: AOC03_RS12140
subclass of: SO_0000673
so part of: AOC03_RS12140
location: complement(5561..6076)
location: region:5561-6076:-1
so has part: feature:5561-6076:-1:exon

WP_204247967.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5561-6076:-1:exon

AOC03_RS12145
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12145
old locus tag: AOC03_12125
so part of: sequence
location: complement(6312..7268)
location: region:6312-7268:-1
so has part: feature:6312-7268:-1:exon
subclass of: SO_0000010

position:6312:-1
position: 6312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7268:-1
position: 7268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6312-7268:-1:exon

AOC03_RS12145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12145
old locus tag: AOC03_12125
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKPVSHEQDLYDELRNLVTTLSPIIVMLNGLIEQADNVVADRLNTSLDKIDRQVYDVTVAIKKLSSTASVTSQSLSEYQALTLEQLQVAVTAFTKNELPSRYDDKIKALINEIKQQLDIAVTSVVTAKNKSLEDQVGIIKEVADKLSTSATNLALFTSQYQAGHEQIIKDIETLETATKTRIAQVKEDADKDLDKIYKSIESMSIKRIAAAAAAATAAVVMSVVGLVFWYVPSFDEVAEMRHQQAELQRGIDELEMGWQQAFDKAISAKTVFACDVNKEKPDVISWCVRADSNTFLRDDKGVVYYKIAELKERRAAE
SIO_010081: AOC03_RS12145
subclass of: SO_0000673
so part of: AOC03_RS12145
location: complement(6312..7268)
location: region:6312-7268:-1
so has part: feature:6312-7268:-1:exon

WP_062536849.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6312-7268:-1:exon

AOC03_RS12150
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12150
old locus tag: AOC03_12130
so part of: sequence
location: complement(7299..9932)
location: region:7299-9932:-1
so has part: feature:7299-9932:-1:exon
subclass of: SO_0000010

position:7299:-1
position: 7299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9932:-1
position: 9932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7299-9932:-1:exon

AOC03_RS12150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12150
old locus tag: AOC03_12130
inference: COORDINATES: protein motif:HMM:NF015354.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MNNQGFHLSVTAISKAKNHSVVAKSAYNSGSKLISKLTGVVHDYTSKTKDSTLQLKDSRGETYTKVIEPNLVHTALITPAIAGNLVVTREGFWNAIEQVETRKNAQFGTEIDVMFPEGIGAEQRIELVETYSQTLSDRYNVLVDVAIHRPHSHVQHKQDGQVAELTTNNFHAHILLSSREILADGEHGYGLSKRKNWSQWSTTERLSKGLNGRGDELKYIRTLWAELANERLPENKAITEKSYREQGINRLPKMKLGKSLYKDVLKGNRSLINEYNETIDEINAYIEQSGLVIDYNDSGRIDLEYNVQTVNGKPVHYKKRKPFARIDLSQIRLVSPAAEPELELEPSPCDIDADNAKAVARLLALSDDIEQQKKMARSALLSTINKLDEELAHQAKQTITILKNTENLPGYGQEVGQDYQAAQEKMRALARQVHTQDESHALDAALGLVEQFRENNTLQTSRSVNHLQDQLEQIDSRVRDNKKVLDTLVPLNNKVMTEYKALKVTQKPFITQLAALETDFKALDWIDIEKTELQRHWREAFEDLQAIDVTNNMETYHKFAAFADLDVDQIKSLEQEREALSALKAIEINAEAENRLTALVSEVQVFKTVNDNDIKQLKQQITTSEKTYQRLSPFYEQRRELLDKSEAVIAQDDELHDEITSTKTTQLNADRLTEWRTRTMALHQQLIKAHEQAEREKKAKRERAEEEKRRQAQLEKERQQAALEQARITETAQYRDRFDDLLVQVNARVDAMDFKAIETAATVIAAAEKLAAEAFILETLTQTDSLTSLQKNLRDTEAKRMAIDVAQSTQTLRQALDKMPDDPRKIETLNELNARFEQVPEIRSGAQNLTQTLVVQVLEIENTLHAQARRYSSPRPF
SIO_010081: AOC03_RS12150
subclass of: SO_0000673
so part of: AOC03_RS12150
location: complement(7299..9932)
location: region:7299-9932:-1
so has part: feature:7299-9932:-1:exon

WP_062536851.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7299-9932:-1:exon

AOC03_RS12155
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12155
old locus tag: AOC03_12135
so part of: sequence
location: 10194..10505
location: region:10194-10505:1
so has part: feature:10194-10505:1:exon
subclass of: SO_0000010

position:10194:1
position: 10194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10505:1
position: 10505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10194-10505:1:exon

AOC03_RS12155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12155
old locus tag: AOC03_12135
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIISDDLFAVKMKQLQALKNEINQDKEELYKVMGEWLANALGDNDNNELQAIFLDSHDNPKYLRLKKHRDLLETVANKLNKLESETKVVSSGFTPPKSAESN
SIO_010081: AOC03_RS12155
subclass of: SO_0000673
so part of: AOC03_RS12155
location: 10194..10505
location: region:10194-10505:1
so has part: feature:10194-10505:1:exon

WP_062536853.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10194-10505:1:exon

AOC03_RS12160
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12160
old locus tag: AOC03_12140
so part of: sequence
location: 11202..12155
location: region:11202-12155:1
so has part: feature:11202-12155:1:exon
subclass of: SO_0000010

position:11202:1
position: 11202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12155:1
position: 12155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11202-12155:1:exon

AOC03_RS12160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12160
old locus tag: AOC03_12140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020444565.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSNDVELYEKKYPEKWIVMQNTITQAFREMSIDEKRIIILASPLVRISNATEKTPIDITASEFAKLSEIDTNSAYKQMKTASRKLMKRTFIYEDKDGDDTEVQWVIRSKYANGYISMHFTDEVIYLLQVFNSFNPYTKYLKDDVLSLKLSYSIDLYHLAKKHEAMGGFSMTLDEYRQELGTPKSYARINNLKENAVDGPIKEINGKTDIDISYENIKRGRTVVGLKFTVKAKPKSKGLESLNQNDESREIPSLTIKQIDRFAPLLANYSPFGSHAPSGKSTQEVISWLHTQLRDEAFLKTHKKHLLAVGYTHPKQSS
SIO_010081: AOC03_RS12160
subclass of: SO_0000673
so part of: AOC03_RS12160
location: 11202..12155
location: region:11202-12155:1
so has part: feature:11202-12155:1:exon

WP_084785921.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11202-12155:1:exon

AOC03_RS12165
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12165
old locus tag: AOC03_12145
so part of: sequence
location: 12240..12473
location: region:12240-12473:1
so has part: feature:12240-12473:1:exon
subclass of: SO_0000010

position:12240:1
position: 12240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12473:1
position: 12473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12240-12473:1:exon

AOC03_RS12165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12165
old locus tag: AOC03_12145
inference: COORDINATES: protein motif:HMM:TIGR02384.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MTTTNYNIRLEQELKDSAFSVFESYGLTPSQAIKLFLTQVAQTNTVPLSFDYQARANVKTLDEALETKAVMNTVVSQ
SIO_010081: AOC03_RS12165
subclass of: SO_0000673
so part of: AOC03_RS12165
location: 12240..12473
location: region:12240-12473:1
so has part: feature:12240-12473:1:exon

WP_062536855.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12240-12473:1:exon

AOC03_RS12170
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12170
old locus tag: AOC03_12150
so part of: sequence
location: 12595..12942
location: region:12595-12942:1
so has part: feature:12595-12942:1:exon
subclass of: SO_0000010

position:12595:1
position: 12595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12942:1
position: 12942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12595-12942:1:exon

AOC03_RS12170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12170
old locus tag: AOC03_12150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011954793.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MWTVITTELFNQWFDQQDESTQEKVLAALVVLEQQGPSLGRPLVDTVYDSKFTNMKELRVQHRGKPLRAFFAFDPKRQAIVLCIGDKGNKKRFYKEMLATADQQYECHLKTLGDL
SIO_010081: AOC03_RS12170
subclass of: SO_0000673
so part of: AOC03_RS12170
location: 12595..12942
location: region:12595-12942:1
so has part: feature:12595-12942:1:exon

WP_062536857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12595-12942:1:exon

AOC03_RS12175
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12175
old locus tag: AOC03_12155
so part of: sequence
location: 12944..13246
location: region:12944-13246:1
so has part: feature:12944-13246:1:exon
subclass of: SO_0000010

position:12944:1
position: 12944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13246:1
position: 13246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12944-13246:1:exon

AOC03_RS12175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12175
old locus tag: AOC03_12155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001140617.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: XRE family transcriptional regulator
translation: MTKTLQEMLADRSLDSRARIQQLAEQLLLENQLSRIREELEISQQELAQTMGIKQPSLSAIENRGNDLKISTMKKYVEAMGGKLRIDVELPTGKHIGFNV
SIO_010081: AOC03_RS12175
subclass of: SO_0000673
so part of: AOC03_RS12175
location: 12944..13246
location: region:12944-13246:1
so has part: feature:12944-13246:1:exon

WP_062536859.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12944-13246:1:exon

AOC03_RS12180
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12180
old locus tag: AOC03_12160
so part of: sequence
location: complement(13473..14093)
location: region:13473-14093:-1
so has part: feature:13473-14093:-1:exon
subclass of: SO_0000010

position:13473:-1
position: 13473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14093:-1
position: 14093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13473-14093:-1:exon

AOC03_RS12180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12180
old locus tag: AOC03_12160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015848528.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MFIRAYLRASTKEQDAKRARAELVVFAKEHHHKIAAFYIENESGATLLRPQLMQLIEDAHEGDIILVEQIDRLARLNPADWDTLKRMLSEKKLSVVSKELPTSYMAFQSEDNTEFMSSMLQAINAMLLDMLAAIARKDYEDRRRRQQEGIIRAKAEGKYLGRRKDVEKRKIIASLLKAGHSYTDIQRTAHCSRQLIAVVSKELKLI
SIO_010081: AOC03_RS12180
subclass of: SO_0000673
so part of: AOC03_RS12180
location: complement(13473..14093)
location: region:13473-14093:-1
so has part: feature:13473-14093:-1:exon

WP_062536861.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13473-14093:-1:exon

AOC03_RS12185
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
gene: map
locus tag: AOC03_RS12185
old locus tag: AOC03_12165
so part of: sequence
location: complement(14285..15058)
location: region:14285-15058:-1
so has part: feature:14285-15058:-1:exon
subclass of: SO_0000010

position:14285:-1
position: 14285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15058:-1
position: 15058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14285-15058:-1:exon

AOC03_RS12185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
gene: map
locus tag: AOC03_RS12185
old locus tag: AOC03_12165
EC number: 3.4.11.18
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008046935.1
GO process: GO:0036211 - protein modification process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I methionyl aminopeptidase
translation: MDKVVVKNAAELEVMRESGRLLASVFDYLDEKITVGISTMDINDLAERYIVDQLGARPASKGQYGYQYALNTSVNNVVCHGIPSDHQILKSGDIVNVDITLEQGGFIADSSKMYLIGEVLPLAKRLVDKTYKAMWEGIRVVKPGATLGDVGHAIQSYAEQQGYSVVREYCGHGIGREMHEEPQVLHYGHQGKGLVLQEGMTFTIEPMINQGKAKVKVKKDGWTVITNDKKLSAQWEHTIAVTSDGYEVLTLRNDETI
SIO_010081: AOC03_RS12185
subclass of: SO_0000673
so part of: AOC03_RS12185
location: complement(14285..15058)
location: region:14285-15058:-1
so has part: feature:14285-15058:-1:exon

WP_062536863.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14285-15058:-1:exon

AOC03_RS12190
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12190
old locus tag: AOC03_12170
so part of: sequence
location: complement(15051..15257)
location: region:15051-15257:-1
so has part: feature:15051-15257:-1:exon
subclass of: SO_0000010

position:15051:-1
position: 15051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15257:-1
position: 15257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15051-15257:-1:exon

AOC03_RS12190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12190
old locus tag: AOC03_12170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015817789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParD-like family protein
translation: MGIVKIDDDLHEEIRKASSVMVRSINAQAEYWMKIGMLAESNPTMSYNQIINEQMRQADINVGNLIDG
SIO_010081: AOC03_RS12190
subclass of: SO_0000673
so part of: AOC03_RS12190
location: complement(15051..15257)
location: region:15051-15257:-1
so has part: feature:15051-15257:-1:exon

WP_062536865.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15051-15257:-1:exon

AOC03_RS12195
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12195
old locus tag: AOC03_12175
so part of: sequence
location: complement(15498..16025)
location: region:15498-16025:-1
so has part: feature:15498-16025:-1:exon
subclass of: SO_0000010

position:15498:-1
position: 15498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16025:-1
position: 16025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15498-16025:-1:exon

AOC03_RS12195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12195
old locus tag: AOC03_12175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011356527.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rrf2 family transcriptional regulator
translation: MAHISTGVEYSLHCLLYLTRPPTGVEEASVRSLAELQGVSNEFLAKLFTKMAKAGLVVATEGVKGGFRLAREPNNITVYDVVIAIDGEKVLFDCREIRGRCAIFDNKAPAWATEGICSIHAVMQMAEKAMHNELKQHTLADLAKRTTDKAHASYGIQVIEWLSHSSAERGINKDK
SIO_010081: AOC03_RS12195
subclass of: SO_0000673
so part of: AOC03_RS12195
location: complement(15498..16025)
location: region:15498-16025:-1
so has part: feature:15498-16025:-1:exon

WP_062536867.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15498-16025:-1:exon

AOC03_RS12200
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12200
old locus tag: AOC03_12180
so part of: sequence
location: 16479..17108
location: region:16479-17108:1
so has part: feature:16479-17108:1:exon
subclass of: SO_0000010

position:16479:1
position: 16479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17108:1
position: 17108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16479-17108:1:exon

AOC03_RS12200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12200
old locus tag: AOC03_12180
inference: COORDINATES: protein motif:HMM:NF014573.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)H-dependent oxidoreductase
translation: MKKILVINASPSQNDSYSRLLTERFIEQWKQRNPDDTFIFRELGNVNIPHVNQLWVKAAFTPEEARSDKDKQAILFSDELVKELQDADVVVFGSPMHNLSVPSTLKAYIDQIIRMGVTTSLVPGTPDSPYVGLLDNKKAYLFLARGGCGFGKGEAYEHMDFQEPYLKAILQMLGITDVTTVNVNYTAMKAELRLDSYTHAQEQVDALFN
SIO_010081: AOC03_RS12200
subclass of: SO_0000673
so part of: AOC03_RS12200
location: 16479..17108
location: region:16479-17108:1
so has part: feature:16479-17108:1:exon

WP_062536869.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16479-17108:1:exon

AOC03_RS12205
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12205
old locus tag: AOC03_12185
so part of: sequence
location: complement(17254..18045)
location: region:17254-18045:-1
so has part: feature:17254-18045:-1:exon
subclass of: SO_0000010

position:17254:-1
position: 17254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18045:-1
position: 18045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17254-18045:-1:exon

AOC03_RS12205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12205
old locus tag: AOC03_12185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019519776.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ankyrin repeat domain-containing protein
translation: MKIFYKMSASVLISTMLLTGCSSLNTHNTVDKTEVVKSSQVAPIPQVGFRYSDAENFDLANEDKLSWRIFYDKPSTGTDAKWFDAVKRGDLATIKYMVNNGQDLEAKDTGSLNQTALGWAAFIGYEDIVDYLVDKGADIYAKDDGDVYNVMKSAVLGGNTVIVKKAHRLLSDKAPVNLNDQAIEDDGETFIMVAASNNRIETVKYLLAQGANPNLVATTQDKTMQSYNQSAYSYACTRGHVEMQKLLASKGVVNHRTGKASCQ
SIO_010081: AOC03_RS12205
subclass of: SO_0000673
so part of: AOC03_RS12205
location: complement(17254..18045)
location: region:17254-18045:-1
so has part: feature:17254-18045:-1:exon

WP_227514347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17254-18045:-1:exon

AOC03_RS12210
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12210
old locus tag: AOC03_12190
so part of: sequence
location: 18517..18894
location: region:18517-18894:1
so has part: feature:18517-18894:1:exon
subclass of: SO_0000010

position:18517:1
position: 18517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18894:1
position: 18894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18517-18894:1:exon

AOC03_RS12210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12210
old locus tag: AOC03_12190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011279464.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNSKAADNNKHDNTKGSDAKDSKDTKGSDAKDSKDTKGSDAKDSKDTKGSDAKDSKDTKGSDAKDSKDTKGSDAKDSKDSDDEDTSLVDTATTKAKEVVGSVAEKAADMIVSAGKKIEEARKED
SIO_010081: AOC03_RS12210
subclass of: SO_0000673
so part of: AOC03_RS12210
location: 18517..18894
location: region:18517-18894:1
so has part: feature:18517-18894:1:exon

WP_062536871.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18517-18894:1:exon

AOC03_RS12215
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12215
old locus tag: AOC03_12195
so part of: sequence
location: complement(19236..20234)
location: region:19236-20234:-1
so has part: feature:19236-20234:-1:exon
subclass of: SO_0000010

position:19236:-1
position: 19236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20234:-1
position: 20234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19236-20234:-1:exon

AOC03_RS12215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12215
old locus tag: AOC03_12195
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF021616.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MTLTTNAQPSTMPVSIITTCYGRNRHLYNLLSSLSHSSVRPNEVIIINDDADPAQLAQYPLNIVQLPTVATKQLNDNIALELSKTALKTGFDIGRNRNVGAAHATNKSLIFLDVDCVVSPSFIEQLTAKLQRHPEALLMGQPRYLTRPLTDAENILLQKGKLSVIHLDKLSVYNPYRHNIGDNLNNHLECENSIEQTQDYGAFWSLCFAISRAQFDHIGGFDIHYVGYGAEDTDFAFKARELDIIFYLTNDVIYHQQHSVYRPPLNHLASIVINANRFYDKWQHWPMTGWLAEFAQMRLIEWEAEQLHPISIIRHSTKAEIDKAYCPDAPYV
SIO_010081: AOC03_RS12215
subclass of: SO_0000673
so part of: AOC03_RS12215
location: complement(19236..20234)
location: region:19236-20234:-1
so has part: feature:19236-20234:-1:exon

WP_062536873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19236-20234:-1:exon

AOC03_RS12220
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12220
old locus tag: AOC03_12200
so part of: sequence
location: complement(20288..21565)
location: region:20288-21565:-1
so has part: feature:20288-21565:-1:exon
subclass of: SO_0000010

position:20288:-1
position: 20288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21565:-1
position: 21565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20288-21565:-1:exon

AOC03_RS12220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12220
old locus tag: AOC03_12200
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRIGYYAHHHGSGHCRQADKLAALLPSAWLQSLTVFTSLDTDAYTFKTITEAQIVRLSPEDERLDDVLPGRAGQYWQPECLHYSPVGNPDIQTRSWQLLDGMRQRNIDLMIIDVSVEVAMFCRAVSMPYLYVRLAGNRDDAPHLNAFAGALGLLVPYPQVLESAMTPNWIRQKSLYLDFLTSANAPNVTYDGFIDILTKLPSHTNACKSIKTLAQHSDDIKKDKCRPLIVTVIKGYGGHEAIDAKLSELRHVMPNAFIISLGPIDDDKRNYVDIATHVSDVTTFIAHSDLLLMACGLNSIAQVYPYATPLIVLPDDRPHQEQELMADALITQGRALSWQQFMNQTSNTSEREIHQNILSSLSNTSKDIDTNPYKQNKDQYHCQNSGQSNAAAHTFMTSLTQYSSIKLWFQQWLLPQLDLIPERIK
SIO_010081: AOC03_RS12220
subclass of: SO_0000673
so part of: AOC03_RS12220
location: complement(20288..21565)
location: region:20288-21565:-1
so has part: feature:20288-21565:-1:exon

WP_062536875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20288-21565:-1:exon

AOC03_RS12225
type: Gene
subclass of: SO_0000704
RO_0002162: 45610
locus tag: AOC03_RS12225
old locus tag: AOC03_12205
so part of: sequence
location: complement(21622..22944)
location: region:21622-22944:-1
so has part: feature:21622-22944:-1:exon
subclass of: SO_0000010

position:21622:-1
position: 21622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22944:-1
position: 22944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21622-22944:-1:exon

AOC03_RS12225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 45610
locus tag: AOC03_RS12225
old locus tag: AOC03_12205
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF024831.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MPPLTAKQTSPLINNYYTTPTHNKDNDNNDSTPRLRIAVIAHYLYPIAEPYAGGLEMITQLICDELVDQGHQVLLYAHPDSQTQAELVPLLSRMQFDAMVYDDEHEMVGMCRDEMYQYLLYQQAMSDIIARDQRGEIDVVHNHSLYHVPMLLGQAFGARFFTTFHTPIFPHLRLALLTLKQGTQTQFTAISHHQQQLFAEFVPSQVVYNGIDVQSFKSNIQDIAEEVYFWYGRICPEKGTHLAMQYCKAAGKRLIIAGPKSNEAYFHQEIGPLLAQDGMDDTPLLFDYVGHLTKAQINEYLCQATAMLFTSTWDEPYGLTLAESLACGTPVIGFDVGAASEIVTADTGIIVPKADQKAFIQAFNDIGDISRQACRQRAEQFCSVAAMVEGYVELYIDTLSDDKPNQHLPIERQTSFSAENALYNVKSDIDTHSRTQTADF
SIO_010081: AOC03_RS12225
subclass of: SO_0000673
so part of: AOC03_RS12225
location: complement(21622..22944)
location: region:21622-22944:-1
so has part: feature:21622-22944:-1:exon

WP_062536877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21622-22944:-1:exon