Nocardia terpenica strain NC_YFY_NT001 plasmid p_NC_YFY_NT001, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia.
Comparative genomics between pathogenic Norcardia
Submitted (09-OCT-2017) Clinical Laboratory, The First Affiliated Hospital of Nanchang University, Yongwai Street, Nanchang 330006, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP023779.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: smrt hgap3 v. smrt v2.3 HGAP3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 147.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/31/2022 02:42:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,092\nCDSs (total) :: 8,025\nGenes (coding) :: 7,924\nCDSs (with protein) :: 7,924\nGenes (RNA) :: 67\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 101\nCDSs (without protein) :: 101\nPseudo Genes (ambiguous residues) :: 0 of 101\nPseudo Genes (frameshifted) :: 25 of 101\nPseudo Genes (incomplete) :: 86 of 101\nPseudo Genes (internal stop) :: 4 of 101\nPseudo Genes (multiple problems) :: 12 of 101\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014985712.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014581.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF027584.2
COORDINATES: similar to AA sequence:RefSeq:WP_014348363.1
COORDINATES: similar to AA sequence:RefSeq:WP_006719933.1
COORDINATES: protein motif:HMM:TIGR00621.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: similar to AA sequence:RefSeq:WP_011210843.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037528.2
COORDINATES: protein motif:HMM:NF036700.2
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: similar to AA sequence:RefSeq:WP_009242151.1
COORDINATES: similar to AA sequence:RefSeq:WP_006246296.1
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007075470.1
COORDINATES: similar to AA sequence:RefSeq:WP_005086319.1
COORDINATES: similar to AA sequence:RefSeq:WP_005086320.1
COORDINATES: protein motif:HMM:NF014898.2
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: protein motif:HMM:NF019443.2
COORDINATES: similar to AA sequence:RefSeq:WP_011209737.1
DNA-directed RNA polymerase subunit beta
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_011212360.1
COORDINATES: protein motif:HMM:NF013265.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011207675.1
COORDINATES: similar to AA sequence:RefSeq:WP_019925557.1
COORDINATES: similar to AA sequence:RefSeq:WP_014985722.1
COORDINATES: similar to AA sequence:RefSeq:WP_014351785.1
COORDINATES: similar to AA sequence:RefSeq:WP_014986523.1
COORDINATES: similar to AA sequence:RefSeq:WP_019927086.1