Legionella israelensis strain L18-01051 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.
Diverse conjugative elements silence natural transformation in Legionella species
Submitted (15-JUL-2019) Bacteriology, Hospices Civils de Lyon, 103 grande rue de la Croix Rousse, Lyon 69004, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP041669.1.\nBacteria and source DNA available from French National reference\ncenter for Legionella.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 21-MAY-2019\nAssembly Method :: Unicycler v. 2019-05-21\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 90.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 03:36:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,806\nCDSs (total) :: 2,751\nGenes (coding) :: 2,728\nCDSs (with protein) :: 2,728\nGenes (RNA) :: 55\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 23\nCDSs (without protein) :: 23\nPseudo Genes (ambiguous residues) :: 0 of 23\nPseudo Genes (frameshifted) :: 12 of 23\nPseudo Genes (incomplete) :: 11 of 23\nPseudo Genes (internal stop) :: 4 of 23\nPseudo Genes (multiple problems) :: 3 of 23\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Unilabs, Enviromental Microbiology / Stavanger University Hospital, Dep. of Microbiology (Norway)
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003637183.1
GO:0003676 - nucleic acid binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010654595.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF027788.2
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004348421.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611486.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014626.2
GO:0008233 - peptidase activity [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003637171.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637170.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637169.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_003637168.1
COORDINATES: similar to AA sequence:RefSeq:WP_015961555.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014842401.1
COORDINATES: similar to AA sequence:RefSeq:WP_015961554.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014842399.1
COORDINATES: protein motif:HMM:NF017333.2
COORDINATES: similar to AA sequence:RefSeq:WP_019350375.1
COORDINATES: similar to AA sequence:RefSeq:WP_019233016.1
COORDINATES: protein motif:HMM:TIGR02762.1
type IV conjugative transfer system protein TraL
COORDINATES: protein motif:HMM:NF017152.2
type IV conjugative transfer system protein TraE
COORDINATES: protein motif:HMM:TIGR02756.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_011212609.1
COORDINATES: protein motif:HMM:TIGR02746.1
COORDINATES: protein motif:HMM:NF021213.2
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_016529742.1
conjugal transfer pilus assembly protein TraU
COORDINATES: protein motif:HMM:TIGR02742.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: protein motif:HMM:NF018666.2
COORDINATES: protein motif:HMM:TIGR02739.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: protein motif:HMM:NF025105.2
COORDINATES: similar to AA sequence:RefSeq:WP_019233002.1
COORDINATES: protein motif:HMM:NF010295.2
conjugal transfer mating-pair stabilization protein TraG
COORDINATES: protein motif:HMM:TIGR02759.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: protein motif:HMM:TIGR02760.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_014845131.1
COORDINATES: similar to AA sequence:RefSeq:WP_015961531.1
COORDINATES: protein motif:HMM:NF027059.2
type II toxin-antitoxin system MqsR family toxin
COORDINATES: protein motif:HMM:TIGR03830.1
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: protein motif:HMM:NF016701.2
GO:0016846 - carbon-sulfur lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018578522.1
COORDINATES: similar to AA sequence:RefSeq:WP_019218423.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018577267.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611583.1
COORDINATES: protein motif:HMM:NF012798.2
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611931.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012247.2
COORDINATES: similar to AA sequence:RefSeq:WP_005771875.1