Sweet potato virus 2, complete genome.
type: Entry
definition: Sweet potato virus 2, complete genome.
sequence version: NC_017970.1
sequence date: 2018-08-13
sequence: sequence
division: VRL
label: NC_017970.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA485481
keyword: RefSeq
source: Sweet potato virus 2
organism: Sweet potato virus 2
taxonomy: Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus.
reference: 1
references: 22562225
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to JN613807.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000353
sequence length: 10731
topology: linear
so has quality: SO_0000987
location: 1..10731
location: region:1-10731:1
RO_0002162: 453050

NC_017970
type: RefSeq
SIO_000068: refseq

PRJNA485481
type: BioProject
SIO_000068: bioproject

1
title: Phylogenetic relationships of closely related potyviruses infecting sweet potato determined by genomic characterization of Sweet potato virus G and Sweet potato virus 2
author: Li, F.
author: Xu, D.
author: Abad, J.
author: Li, R.
journal: Virus Genes
volume: 45
issue: 1
pages: 118-125
year: 2012
pubmed: 22562225

22562225
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (25-MAY-2012) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Li, F.
author: Xu, D.
author: Abad, J.A.
author: Li, R.
journal: Submitted (23-AUG-2011) National Germplasm Resources Laboratory, USDA-ARS, 10300 Baltimore Ave., Beltsville, MD 20705, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10731:1
position: 10731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10731:1:source
so part of: sequence
organism: Sweet potato virus 2
mol type: genomic RNA
isolate: GWB-2
host: Ipomoea batatas cv. Beauregard
country: USA
collection date: 2001

453050
type: Taxonomy
SIO_000068: taxonomy

A329_gp1
type: Gene
subclass of: SO_0000704
RO_0002162: 453050
locus tag: A329_gp1
so part of: sequence
location: 118..10518
location: region:118-10518:1
so has part: feature:118-10518:1:exon
subclass of: SO_0000010

12978759
type: Gene
SIO_000068: ncbigene

position:118:1
position: 118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10518:1
position: 10518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:118-10518:1:exon

A329_gp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 453050
locus tag: A329_gp1
codon start: 1
product: polyprotein
translation: MACVTNGTAFARKKKMTWKECCNKWGRAAMEQQQGKGSAYTTEVSRDQLAANIFAFIPTTEWHSYYVARVGLSANALKLKYAISFGEKYEHGAIFNRCPECDCAIDEHYCDECEIRFKKADDNIIKNMNETAKALGGWENYYAATWKQFEAAKYDMEQIAPTAGMLERRAKEAEKLLGKKAKRHEIAEVQQLWEEFEAAKELEAEEETFFEHEASLSSIPEPTTYEEAFPQLKVTSDVSINTSQASEVVEDNLGFFFGEIPAKIALPTIPILEILPAAPILNLNGELNDIAEVKQPEVIDEVCVTTQPKETDIIQSGLKKYELVNGKFQKVKKLPKTLYPWGDRETTPGKTQHAMVTKWVRKKMSEEADKEEKIWSAWEHTKKQQLEKRLDLKVKWRYGMFRLVKKTRKDNQRQRQKQRAMLEQKKLEMMPQQIVSTISIGGGLAPSHMKEATQKSGMIFCTPSMKKRKLFKPLVISNGNLDNLTQAVLKIACKKEMNVEFIGKRVIKGDYTRKENVRHLRLQLKHMKGLRHSIDLRIPSGLQALIVKAARVAAWKKIYNTQNVVKGMSGFVLNPQRLQGKTGHAPQGIFVVRGAFKGVLYDARMKIGRSILPYMEQFSQTGDRFWNGYDQMYRVLRGNDQDHTCKSDLDVNEAGKLAAVMQHLCLPMNRITCLTCANKILEMSSSEWVEHIRMFVNSKLEFIRKECPNYKHVHWMIETMTKNLVHENKNLKAFNEIQQLIGDRTDAPFSTVNEINKILVKGGKIKAEEFLQASEHLLEVARYLKNRTENIKKGSLVSFRNKISQKAHLNLSLMCDNQLDKNGNLIWGDRGYHSKRFLSNYFEVVEPEQGYEKHIIRQNPNGARKLAIGKLIVSTNFSVFREQMKGEPIPKLKLDNHCTSLREGNFVYPCCCVTMDDGTPIESEFKLPTKNHLVIGNSGDPKYVDMPPEVDKKMYIAKEGYCYVNIFLAMLVNINESDAKDFTKQVRDILMEKLGKWPSMYDVATACAWISIFYPETRNAELPRILVDHNTKTMHVIDSFGSLTTGYHVLKANTVSQLIQFSSNSLDSEMKHYLVGGIVGVSKDEERCLRSIIRSVFKPELMHQILEEDPYVLLLSILSPRVLLALFNSGSLDRSLEKWLTKDQEVSTILGILIELSRKVTVARTLDEQLNVIEGHASYLIDNLWIEGRKTVAHALSYKIARGLSEKREANKVLYEQGHRITAFISSHEMMEKIWDQLLLEAWNELSWQEKCCSMMRSLKYAKPLQGGFPQVNIGGLRDKVGESLTTLHTKSAVIGKECKKSVIDNVASLYKSIIRNTINVTLSTVRLLMPDILKFVNILLVINLLLQIAKTAKSMNQKTKQMKIDLGEFMLDQEIEKINVIYNSMCSKEGKLPTKEEFLEKVEYLNPQLLGTAKWLVYAYDSDVFHQAKSAKESSYERIIAFIALVLMVIDAERSDCVYKSLNKLKGLMGTIGDGVYHQSLDDISNEFEEKKLTIDFELQSDESHINSESDSTFGDWWKKQLETNNVIPHYRTEGHFMEFTRANAVSVANTIAMSPHKDLLIRGAVGSGKSTGLPFYLSRKGRVLLVEPTRPLAENVHRQLAGEPFMIQSTLRMRGLSVFGSAPISIMTSGFAFNYYAHNPDQLREYEFVIFDECHVNDAHAMAFRCLLHEHAFNGKVLKVSATPPGREVEFSTQYPVKIKTEERLSFQAFVDAQGTGSNSDVISSADNILVYVASYNDVDELSKLLIDRGHKVTNVDGRTMKVGNVEIITSGTSNKKHFIVATNIIENGVTLNIEAVVDFGTKVTVYLDVDSRMIRPCKGPITYGERIQRLGRVGRNKVGIALRIGFTERGLCEIPQTVATEAAFLSFAYGLPVMTNNVSTSLLSTCTVRQARTVLQFELTPFYTVNLVRYDGSMHQAIHNLLKKYKLRDSEIVLNKLAIPNRGITGWLSVCDYIRIGQRMDLDDSIRIPFLNNAMPVRLHQEIWDVIQKYKHEAGFG…
SIO_010081: A329_gp1
subclass of: SO_0000673
so part of: A329_gp1
location: 118..10518
location: region:118-10518:1
so has part: feature:118-10518:1:exon

YP_006382460.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:118-10518:1:exon

A329_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 453050
locus tag: A329_gp1
product: P1 protein
SIO_010081: A329_gp1
subclass of: SO_0000673
so part of: A329_gp1
location: 118..1971
location: region:118-1971:1
so has part: feature:118-1971:1:exon

YP_006438188.1
type: Protein
SIO_000068: ncbiprotein

position:1971:1
position: 1971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:118-1971:1:exon

A329_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 453050
locus tag: A329_gp1
product: HC-Pro protein
SIO_010081: A329_gp1
subclass of: SO_0000673
so part of: A329_gp1
location: 1972..3345
location: region:1972-3345:1
so has part: feature:1972-3345:1:exon

YP_006438189.1
type: Protein
SIO_000068: ncbiprotein

position:1972:1
position: 1972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3345:1
position: 3345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1972-3345:1:exon

A329_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 453050
locus tag: A329_gp1
product: P3 protein
SIO_010081: A329_gp1
subclass of: SO_0000673
so part of: A329_gp1
location: 3346..4401
location: region:3346-4401:1
so has part: feature:3346-4401:1:exon

YP_006438190.1
type: Protein
SIO_000068: ncbiprotein

position:3346:1
position: 3346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4401:1
position: 4401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3346-4401:1:exon

A329_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 453050
locus tag: A329_gp1
product: 6K1 protein
SIO_010081: A329_gp1
subclass of: SO_0000673
so part of: A329_gp1
location: 4402..4557
location: region:4402-4557:1
so has part: feature:4402-4557:1:exon

YP_006438191.1
type: Protein
SIO_000068: ncbiprotein

position:4402:1
position: 4402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4557:1
position: 4557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4402-4557:1:exon

A329_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 453050
locus tag: A329_gp1
product: CI protein
SIO_010081: A329_gp1
subclass of: SO_0000673
so part of: A329_gp1
location: 4558..6486
location: region:4558-6486:1
so has part: feature:4558-6486:1:exon

YP_006438192.1
type: Protein
SIO_000068: ncbiprotein

position:4558:1
position: 4558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6486:1
position: 6486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4558-6486:1:exon

A329_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 453050
locus tag: A329_gp1
product: 6K2 protein
SIO_010081: A329_gp1
subclass of: SO_0000673
so part of: A329_gp1
location: 6487..6645
location: region:6487-6645:1
so has part: feature:6487-6645:1:exon

YP_006438193.1
type: Protein
SIO_000068: ncbiprotein

position:6487:1
position: 6487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6645:1
position: 6645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6487-6645:1:exon

A329_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 453050
locus tag: A329_gp1
product: NIa-VPg protein
SIO_010081: A329_gp1
subclass of: SO_0000673
so part of: A329_gp1
location: 6646..7227
location: region:6646-7227:1
so has part: feature:6646-7227:1:exon

YP_006438194.1
type: Protein
SIO_000068: ncbiprotein

position:6646:1
position: 6646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7227:1
position: 7227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6646-7227:1:exon

A329_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 453050
locus tag: A329_gp1
product: NIa-Pro protein
SIO_010081: A329_gp1
subclass of: SO_0000673
so part of: A329_gp1
location: 7228..7956
location: region:7228-7956:1
so has part: feature:7228-7956:1:exon

YP_006438195.1
type: Protein
SIO_000068: ncbiprotein

position:7228:1
position: 7228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7956:1
position: 7956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7228-7956:1:exon

A329_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 453050
locus tag: A329_gp1
product: NIb protein
SIO_010081: A329_gp1
subclass of: SO_0000673
so part of: A329_gp1
location: 7957..9519
location: region:7957-9519:1
so has part: feature:7957-9519:1:exon

YP_006438196.1
type: Protein
SIO_000068: ncbiprotein

position:7957:1
position: 7957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9519:1
position: 9519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7957-9519:1:exon

A329_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 453050
locus tag: A329_gp1
product: coat protein
SIO_010081: A329_gp1
subclass of: SO_0000673
so part of: A329_gp1
location: 9520..10515
location: region:9520-10515:1
so has part: feature:9520-10515:1:exon

YP_006438197.1
type: Protein
SIO_000068: ncbiprotein

position:9520:1
position: 9520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10515:1
position: 10515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9520-10515:1:exon

A329_gp2
type: Gene
subclass of: SO_0000704
RO_0002162: 453050
locus tag: A329_gp2
so part of: sequence
location: <3816..4007
location: region:3816-4007:1
so has part: feature:3816-4007:1:exon
subclass of: SO_0000010

13036848
type: Gene
SIO_000068: ncbigene

position:3816:1
position: 3816
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:4007:1
position: 4007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3816-4007:1:exon

A329_gp2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 453050
locus tag: A329_gp2
codon start: 1
product: PIPO
translation: NLGSTFAGSMERVKLAGKVLFNDALVKVCKTFTRRFSPSKYRRFERQSRRITYYITHKECCDR
SIO_010081: A329_gp2
subclass of: SO_0000673
so part of: A329_gp2
location: <3816..4007
location: region:3816-4007:1
so has part: feature:3816-4007:1:exon

YP_006438187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3816-4007:1:exon