Pseudarthrobacter chlorophenolicus A6 plasmid pACHL02, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Pseudarthrobacter.
Complete sequence of plasmid2 of Arthrobacter chlorophenolicus A6
Submitted (06-JAN-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001343.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4024171\nSource DNA and bacteria available from Janet Jansson\n(janet.jansson@microbe.slu.se)\nSource DNA available from Janet Jansson\n(janet.jansson@microbe.slu.se)\nContacts: Janet Jansson (janet.jansson@microbe.slu.se)\n David Bruce (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-PGF\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 01:56:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,722\nCDSs (total) :: 4,614\nGenes (coding) :: 4,568\nCDSs (with protein) :: 4,568\nGenes (RNA) :: 108\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 89\nncRNAs :: 4\nPseudo Genes (total) :: 46\nCDSs (without protein) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 23 of 46\nPseudo Genes (incomplete) :: 25 of 46\nPseudo Genes (internal stop) :: 2 of 46\nPseudo Genes (multiple problems) :: 4 of 46\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudarthrobacter chlorophenolicus
COORDINATES: similar to AA sequence:RefSeq:WP_013603098.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012623487.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689751.1
COORDINATES: similar to AA sequence:RefSeq:WP_014923435.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623490.1
COORDINATES: similar to AA sequence:RefSeq:WP_009357594.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017199313.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762465.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603121.1
COORDINATES: similar to AA sequence:RefSeq:WP_014908720.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF025056.2
GO:0003953 - NAD+ nucleosidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611781.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISAcl2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_003990907.1
COORDINATES: similar to AA sequence:RefSeq:WP_014316116.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003849952.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002854075.1
GO:0018942 - organometal metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018760059.1
COORDINATES: similar to AA sequence:RefSeq:WP_014805449.1
COORDINATES: similar to AA sequence:RefSeq:WP_017611627.1
COORDINATES: protein motif:HMM:NF012926.2
COORDINATES: protein motif:HMM:NF022986.2
COORDINATES: similar to AA sequence:RefSeq:WP_020489003.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
GO:0006006 - glucose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011776989.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014805443.1
cytochrome c biogenesis CcdA family protein
COORDINATES: protein motif:HMM:NF020123.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011689632.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689631.1
COORDINATES: similar to AA sequence:RefSeq:WP_014319630.1
COORDINATES: similar to AA sequence:RefSeq:WP_014317383.1
COORDINATES: protein motif:HMM:NF025273.2
COORDINATES: similar to AA sequence:RefSeq:WP_005438382.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00379
cyclic di-AMP (ydaO/yuaA leader) riboswitch senses the signaling molecule cyclic di-AMP; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF013700.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021214.2
COORDINATES: similar to AA sequence:RefSeq:WP_018772500.1
COORDINATES: similar to AA sequence:RefSeq:WP_018772499.1
COORDINATES: similar to AA sequence:RefSeq:WP_018780311.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006292296.1
COORDINATES: similar to AA sequence:RefSeq:WP_018779732.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623536.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_013603139.1
COORDINATES: similar to AA sequence:RefSeq:WP_014740092.1
GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024950.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011777321.1
GO:0004040 - amidase activity [Evidence IEA]; GO:0042834 - peptidoglycan binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011777320.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689683.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689812.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777317.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689680.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689679.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689678.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347385.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762605.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018762604.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623556.1
COORDINATES: similar to AA sequence:RefSeq:WP_005271013.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009358117.1
COORDINATES: similar to AA sequence:RefSeq:WP_009358118.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0018506 - maleylacetate reductase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009358119.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777278.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024921.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009358122.1
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: protein motif:HMM:NF015649.2
BTAD domain-containing putative transcriptional regulator
COORDINATES: protein motif:HMM:NF019013.2
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009358125.1
4-hydroxyphenylacetate 3-hydroxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009358126.1
COORDINATES: similar to AA sequence:RefSeq:WP_009358127.1
TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013602991.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
beta-ketoacyl-[acyl-carrier-protein] synthase family protein
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012623567.1
COORDINATES: similar to AA sequence:RefSeq:WP_013953673.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623570.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013677019.1
COORDINATES: similar to AA sequence:RefSeq:WP_008357954.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623572.1
COORDINATES: protein motif:HMM:NF025878.2
COORDINATES: similar to AA sequence:RefSeq:WP_009359507.1
COORDINATES: similar to AA sequence:RefSeq:WP_009359506.1
COORDINATES: similar to AA sequence:RefSeq:WP_005168815.1
COORDINATES: similar to AA sequence:RefSeq:WP_009359504.1
GO:0042597 - periplasmic space [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009359503.1
COORDINATES: similar to AA sequence:RefSeq:WP_009359502.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0006635 - fatty acid beta-oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009359501.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012623576.1
COORDINATES: similar to AA sequence:RefSeq:WP_014923460.1
COORDINATES: similar to AA sequence:RefSeq:WP_012630905.1
COORDINATES: protein motif:HMM:NF024949.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_005054971.1
COORDINATES: similar to AA sequence:RefSeq:WP_005268748.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777186.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623597.1
GO:0016301 - kinase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016442589.1
COORDINATES: similar to AA sequence:RefSeq:WP_004113181.1
COORDINATES: similar to AA sequence:RefSeq:WP_017739844.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016442592.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004113178.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020075702.1
COORDINATES: similar to AA sequence:RefSeq:WP_018189684.1
COORDINATES: similar to AA sequence:RefSeq:WP_009321196.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018189891.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013861323.1
COORDINATES: similar to AA sequence:RefSeq:WP_018763303.1
COORDINATES: similar to AA sequence:RefSeq:WP_012039533.1
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005504866.1
GO:0006002 - fructose 6-phosphate metabolic process [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012630816.1
COORDINATES: similar to AA sequence:RefSeq:WP_008357175.1
COORDINATES: protein motif:HMM:NF024808.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017830811.1
COORDINATES: similar to AA sequence:RefSeq:WP_020385706.1
COORDINATES: similar to AA sequence:RefSeq:WP_018598549.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: protein motif:HMM:NF019542.2
COORDINATES: similar to AA sequence:RefSeq:WP_011777307.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018762475.1
GO:0003676 - nucleic acid binding [Evidence IEA]
helicase associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018762485.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762484.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011689583.1
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_018762481.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751467.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751468.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603105.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689580.1
COORDINATES: similar to AA sequence:RefSeq:WP_005268113.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603102.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623620.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013603100.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762473.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein