Candidatus Amoebophilus asiaticus 5a2, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.
The genome of the amoeba symbiont 'Candidatus Amoebophilus asiaticus' reveals common mechanisms for host cell interaction among amoeba-associated bacteria
Complete sequence of Candidatus Amoebophilus asiaticus 5a2
Submitted (22-APR-2009) Department of Microbial Ecology, University of Vienna, Althanstrasse 14, Wien 1090, Austria
Submitted (05-JUN-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001102.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4024151\nSource DNA and bacteria available from Matthias Horn\n(horn@microbial-ecology.net)\nContacts: Matthias Horn (horn@microbial-ecology.net)\n David Bruce (microbe@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LLNL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nAdditional Note: There is a 2,679 bp tandem repeat with 24.7 copies\nof a 108 bp repeat unit within the exported fasta file from\n1551970-1554648. There is a 14,510 bp tandemly duplicated region\nthat is 100% identical within the exported fasta file from\n213973-242992. There is also a 12,291 bp tandemly duplicated region\nthat is 100% identical within the exported fasta file from\n540862-565443.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 08:01:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,467\nCDSs (total) :: 1,427\nGenes (coding) :: 1,270\nCDSs (with protein) :: 1,270\nGenes (RNA) :: 40\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 35\nncRNAs :: 2\nPseudo Genes (total) :: 157\nCDSs (without protein) :: 157\nPseudo Genes (ambiguous residues) :: 0 of 157\nPseudo Genes (frameshifted) :: 78 of 157\nPseudo Genes (incomplete) :: 86 of 157\nPseudo Genes (internal stop) :: 65 of 157\nPseudo Genes (multiple problems) :: 58 of 157\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008631419.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
chromosomal replication initiator protein DnaA
COORDINATES: protein motif:HMM:NF024957.2
COORDINATES: similar to AA sequence:RefSeq:WP_009183145.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
COORDINATES: protein motif:HMM:NF025019.2
COORDINATES: similar to AA sequence:RefSeq:WP_017731352.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: protein motif:HMM:TIGR00088.1
GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF015684.2
COORDINATES: similar to AA sequence:RefSeq:WP_001229392.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472242.1
GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA]
polyribonucleotide nucleotidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014796981.1
COORDINATES: similar to AA sequence:RefSeq:WP_017729876.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009583285.1
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015028009.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472247.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013798.2
COORDINATES: protein motif:HMM:TIGR00536.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: protein motif:HMM:NF039966.1
COORDINATES: protein motif:HMM:NF014587.2
COORDINATES: protein motif:HMM:TIGR01972.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472996.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0009381 - excinuclease ABC activity [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF024339.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008198764.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009195092.1
COORDINATES: protein motif:HMM:NF012424.2
dihydrolipoamide acetyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012472259.1
GO:0004298 - threonine-type endopeptidase activity [Evidence IEA]
GO:0051603 - proteolysis involved in protein catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_086558298.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025001.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611597.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS5-like element ISCaa2 family transposase
COORDINATES: protein motif:HMM:NF019843.2
COORDINATES: similar to AA sequence:RefSeq:WP_019599329.1
GO:0008760 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:NF025488.2
COORDINATES: similar to AA sequence:RefSeq:WP_015264150.1
COORDINATES: protein motif:HMM:NF025010.2
SurA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012473124.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472370.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013514.2
COORDINATES: protein motif:HMM:NF016435.2
COORDINATES: similar to AA sequence:RefSeq:WP_012472346.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013454251.1
COORDINATES: similar to AA sequence:RefSeq:WP_017731309.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472274.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009186184.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012472276.1
COORDINATES: similar to AA sequence:RefSeq:WP_002698364.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF014525.2
COORDINATES: protein motif:HMM:NF013760.2
MotA/TolQ/ExbB proton channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015264805.1
COORDINATES: similar to AA sequence:RefSeq:WP_018479815.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611661.1
IS1-like element ISCaa4 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_019596618.1
GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045264 - plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011583588.1
COORDINATES: protein motif:HMM:TIGR01144.1
COORDINATES: protein motif:HMM:TIGR01145.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472289.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472290.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611879.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015194.2
COORDINATES: similar to AA sequence:RefSeq:WP_013453643.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611288.1
IS5-like element ISCaa3 family transposase
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: similar to AA sequence:RefSeq:WP_018479617.1
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013455443.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025490.2
COORDINATES: protein motif:HMM:NF013700.2
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: protein motif:HMM:NF014114.2
COORDINATES: protein motif:HMM:NF012783.2
ATP-dependent Clp protease proteolytic subunit
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012853.2
COORDINATES: similar to AA sequence:RefSeq:WP_012472753.1
IS5-like element ISCaa6 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_014934531.1
GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-diacylglycerol--serine O-phosphatidyltransferase
COORDINATES: protein motif:HMM:NF009585.0
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019706028.1
COORDINATES: protein motif:HMM:NF019403.2
heparan-alpha-glucosaminide N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012472723.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018476027.1
zinc dependent phospholipase C family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012472318.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020526794.1
COORDINATES: protein motif:HMM:TIGR00472.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019599822.1
COORDINATES: similar to AA sequence:RefSeq:WP_017732402.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
3-oxoacyl-[acyl-carrier-protein] reductase
COORDINATES: similar to AA sequence:RefSeq:WP_012472325.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472326.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477071.1
COORDINATES: protein motif:HMM:NF012434.2
Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein
COORDINATES: protein motif:HMM:NF014795.2
COORDINATES: protein motif:HMM:NF020130.2
3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012695.2
COORDINATES: protein motif:HMM:TIGR00150.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: similar to AA sequence:RefSeq:WP_012472342.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011586513.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472344.1
COORDINATES: similar to AA sequence:RefSeq:WP_005853956.1
IS982-like element ISCaa5 family transposase
COORDINATES: protein motif:HMM:NF024736.2
COORDINATES: similar to AA sequence:RefSeq:WP_012472429.1
COORDINATES: similar to AA sequence:RefSeq:WP_014797101.1
COORDINATES: similar to AA sequence:RefSeq:WP_010609811.1
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472355.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472356.1
membrane protein insertion efficiency factor YidD
COORDINATES: similar to AA sequence:RefSeq:WP_012472357.1
COORDINATES: similar to AA sequence:RefSeq:WP_019945925.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF039724.1
COORDINATES: protein motif:HMM:NF025226.2
COORDINATES: similar to AA sequence:RefSeq:WP_012472362.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00492.1
GO:0008784 - alanine racemase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014772362.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472363.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010611734.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017731046.1
GO:0004540 - ribonuclease activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009197482.1
COORDINATES: similar to AA sequence:RefSeq:WP_015029076.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013454711.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
IS110-like element ISCaa7 family transposase
COORDINATES: protein motif:HMM:NF016260.2
GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
translocation/assembly module TamB domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009284132.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: similar to AA sequence:RefSeq:WP_010610019.1
COORDINATES: protein motif:HMM:NF025227.2
COORDINATES: similar to AA sequence:RefSeq:WP_014020034.1
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008629679.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472380.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010611192.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_019596889.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000101799.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472384.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014790280.1
COORDINATES: similar to AA sequence:RefSeq:WP_018109212.1
COORDINATES: similar to AA sequence:RefSeq:WP_017732345.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009578728.1
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472388.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472389.1
COORDINATES: similar to AA sequence:RefSeq:WP_010611199.1
COORDINATES: similar to AA sequence:RefSeq:WP_009578724.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472392.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472393.1
COORDINATES: similar to AA sequence:RefSeq:WP_009284809.1
COORDINATES: similar to AA sequence:RefSeq:WP_014798371.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472396.1
COORDINATES: similar to AA sequence:RefSeq:WP_007073026.1
COORDINATES: similar to AA sequence:RefSeq:WP_015264108.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472399.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472400.1
COORDINATES: similar to AA sequence:RefSeq:WP_015813794.1
COORDINATES: similar to AA sequence:RefSeq:WP_013455156.1
COORDINATES: similar to AA sequence:RefSeq:WP_010856292.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472404.1
COORDINATES: similar to AA sequence:RefSeq:WP_009194196.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472406.1
COORDINATES: similar to AA sequence:RefSeq:WP_011586511.1
COORDINATES: protein motif:HMM:NF014669.2
COORDINATES: similar to AA sequence:RefSeq:WP_010855490.1
GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024245.2
helix-hairpin-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019941471.1
COORDINATES: protein motif:HMM:NF008453.0
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014934396.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_014934399.1
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF024603.2
COORDINATES: similar to AA sequence:RefSeq:WP_012472732.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472779.1
COORDINATES: protein motif:HMM:TIGR03521.1
gliding motility-associated ABC transporter substrate-binding protein GldG
COORDINATES: similar to AA sequence:RefSeq:WP_020532756.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018344991.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB
COORDINATES: similar to AA sequence:RefSeq:WP_008198005.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472348.1
COORDINATES: similar to AA sequence:RefSeq:WP_008201238.1
COORDINATES: similar to AA sequence:RefSeq:WP_010887922.1
COORDINATES: similar to AA sequence:RefSeq:WP_017730243.1
COORDINATES: similar to AA sequence:RefSeq:WP_008202404.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017733336.1
GO:0043022 - ribosome binding [Evidence IEA]
GO:0017148 - negative regulation of translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00121.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012472268.1
COORDINATES: similar to AA sequence:RefSeq:WP_007660530.1
GO:0032977 - membrane insertase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00697.1
GO:1990397 - queuosine salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF006927.0
COORDINATES: similar to AA sequence:RefSeq:WP_018618458.1
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01981.1
GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00082.1
GO:0019843 - rRNA binding [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF012349.2
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020532418.1
GO:0008360 - regulation of cell shape [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017730035.1
GO:0008658 - penicillin binding [Evidence IEA]
penicillin-binding transpeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF010532.0
COORDINATES: similar to AA sequence:RefSeq:WP_010609813.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612132.1
IS5-like element ISCaa8 family transposase
COORDINATES: protein motif:HMM:TIGR03523.1
COORDINATES: similar to AA sequence:RefSeq:WP_017730372.1
COORDINATES: protein motif:HMM:TIGR03513.1
COORDINATES: similar to AA sequence:RefSeq:WP_017730374.1
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011586102.1
GO:0008963 - phospho-N-acetylmuramoyl-pentapeptide-transferase activity [Evidence IEA]
phospho-N-acetylmuramoyl-pentapeptide- transferase
COORDINATES: similar to AA sequence:RefSeq:WP_009581556.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012473033.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472470.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014934661.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008186 - ATP-dependent activity, acting on RNA [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011586944.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019596790.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472468.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF022072.2
COORDINATES: similar to AA sequence:RefSeq:WP_012472463.1
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: similar to AA sequence:RefSeq:WP_017731001.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011586842.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]; GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
COORDINATES: similar to AA sequence:RefSeq:WP_012472476.1
COORDINATES: similar to AA sequence:RefSeq:WP_009579207.1
COORDINATES: similar to AA sequence:RefSeq:WP_015333185.1
GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018477042.1
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0070006 - metalloaminopeptidase activity [Evidence IEA]
aminopeptidase P N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013455067.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472483.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF013702.2
GO:0016746 - acyltransferase activity [Evidence IEA]
1-acyl-sn-glycerol-3-phosphate acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017733464.1
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_015029417.1
trifunctional transcriptional activator/DNA repair protein Ada/methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011587069.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_009185358.1
GO:0008780 - acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_010609286.1
GO:0016836 - hydro-lyase activity [Evidence IEA]; GO:0008759 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO:0009245 - lipid A biosynthetic process [Evidence IEA]
bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_012472491.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0009245 - lipid A biosynthetic process [Evidence IEA]
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase
COORDINATES: protein motif:HMM:NF013942.2
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: similar to AA sequence:RefSeq:WP_013454707.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014633.2
COORDINATES: protein motif:HMM:NF017917.2
COORDINATES: protein motif:HMM:NF014477.2
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472499.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: similar to AA sequence:RefSeq:WP_007653822.1
COORDINATES: protein motif:HMM:TIGR00200.1
CinA family nicotinamide mononucleotide deamidase-related protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00010
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018477485.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002705341.1
GO:0008839 - 4-hydroxy-tetrahydrodipicolinate reductase [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate reductase
COORDINATES: protein motif:HMM:NF040144.1
COORDINATES: similar to AA sequence:RefSeq:WP_013455863.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_003097243.1
COORDINATES: similar to AA sequence:RefSeq:WP_001030000.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015266171.1
COORDINATES: similar to AA sequence:RefSeq:WP_009581723.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS5-like element ISCaa9 family transposase
COORDINATES: protein motif:HMM:NF013152.2
GO:0003796 - lysozyme activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025224.2
leucine-rich repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009184701.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase carboxyltransferase subunit alpha
COORDINATES: protein motif:HMM:NF013672.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014020130.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006261 - DNA-templated DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009196649.1
GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
alpha-ketoacid dehydrogenase subunit alpha/beta
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: similar to AA sequence:RefSeq:WP_012473150.1
COORDINATES: similar to AA sequence:RefSeq:WP_009581912.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012581.2
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015029771.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF036995.2
DUF1016 N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF018009.2
PDDEXK nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF023428.2
replication-associated recombination protein A
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF036423.2
Arm DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013124.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611641.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611659.1
COORDINATES: protein motif:HMM:NF025063.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611365.1
COORDINATES: similar to AA sequence:RefSeq:WP_010609720.1
COORDINATES: similar to AA sequence:RefSeq:WP_009195654.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015267823.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472979.1
COORDINATES: similar to AA sequence:RefSeq:WP_009582099.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
COORDINATES: protein motif:HMM:TIGR00188.1
GO:0004526 - ribonuclease P activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01251.1
GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02453.1
COORDINATES: similar to AA sequence:RefSeq:WP_009194053.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_002996718.1
COORDINATES: protein motif:HMM:TIGR00657.1
GO:0004072 - aspartate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006778.0
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019344.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014036.2
COORDINATES: similar to AA sequence:RefSeq:WP_020530932.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013455875.1
COORDINATES: similar to AA sequence:RefSeq:WP_009194572.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009194808.1
COORDINATES: similar to AA sequence:RefSeq:WP_010608224.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012686.2
COORDINATES: similar to AA sequence:RefSeq:WP_019943268.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009195716.1
COORDINATES: similar to AA sequence:RefSeq:WP_018474874.1
permease-like cell division protein FtsX
COORDINATES: protein motif:HMM:NF013340.2
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_012472576.1
COORDINATES: similar to AA sequence:RefSeq:WP_010610122.1
COORDINATES: similar to AA sequence:RefSeq:WP_020527186.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472579.1
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015813189.1
COORDINATES: similar to AA sequence:RefSeq:WP_019599049.1
GO:0009030 - thiamine-phosphate kinase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019301.2
COORDINATES: similar to AA sequence:RefSeq:WP_009056595.1
COORDINATES: protein motif:HMM:NF025021.2
COORDINATES: similar to AA sequence:RefSeq:WP_014020117.1
COORDINATES: protein motif:HMM:TIGR01951.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
transcription antitermination factor NusB
COORDINATES: similar to AA sequence:RefSeq:WP_118996738.1
COORDINATES: similar to AA sequence:RefSeq:WP_013928522.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025486.2
COORDINATES: protein motif:HMM:NF014645.2
GO:0009029 - tetraacyldisaccharide 4'-kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015814588.1
GO:0051540 - metal cluster binding [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
Nif3-like dinuclear metal center hexameric protein
COORDINATES: protein motif:HMM:NF014630.2
C4-type zinc ribbon domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017730176.1
COORDINATES: similar to AA sequence:RefSeq:WP_009578606.1
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:NF013862.2
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012472613.1
COORDINATES: similar to AA sequence:RefSeq:WP_013455435.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018476370.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009281815.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011585700.1
COORDINATES: similar to AA sequence:RefSeq:WP_012473473.1
COORDINATES: protein motif:HMM:NF015714.2
COORDINATES: similar to AA sequence:RefSeq:WP_012472990.1
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: protein motif:HMM:NF018476.2
GO:0004519 - endonuclease activity [Evidence IEA]
type II toxin-antitoxin system YoeB family toxin
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF012234.2
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009581275.1
COORDINATES: similar to AA sequence:RefSeq:WP_019596831.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0008168 - methyltransferase activity [Evidence IEA]
GO:0046118 - 7-methylguanosine biosynthetic process [Evidence IEA]; GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
COORDINATES: protein motif:HMM:NF012700.2
COORDINATES: similar to AA sequence:RefSeq:WP_009578787.1
GH3 auxin-responsive promoter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015813577.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472643.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007654458.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
ATP-dependent protease ATPase subunit HslU
COORDINATES: protein motif:HMM:TIGR00067.1
GO:0008881 - glutamate racemase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009284707.1
GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]
GO:0006165 - nucleoside diphosphate phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472648.1
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:NF018537.2
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015920 - lipopolysaccharide transport [Evidence IEA]
LPS export ABC transporter periplasmic protein LptC
COORDINATES: protein motif:HMM:NF014826.2
COORDINATES: protein motif:HMM:NF015251.2
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012472654.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472655.1
GO:0008097 - 5S rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
50S ribosomal protein L25/general stress protein Ctc
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: similar to AA sequence:RefSeq:WP_013410178.1
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: similar to AA sequence:RefSeq:WP_009581854.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha
COORDINATES: protein motif:HMM:TIGR00611.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
All proteins in this family for which functions are known are DNA-binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017539.2
COORDINATES: protein motif:HMM:NF022150.2
COORDINATES: similar to AA sequence:RefSeq:WP_012472674.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017731304.1
COORDINATES: similar to AA sequence:RefSeq:WP_019595854.1
COORDINATES: similar to AA sequence:RefSeq:WP_010855246.1
GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019156.2
COORDINATES: similar to AA sequence:RefSeq:WP_012472686.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472680.1
COORDINATES: protein motif:HMM:TIGR00048.1
GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
COORDINATES: protein motif:HMM:TIGR00595.1
GO:0005658 - alpha DNA polymerase:primase complex [Evidence IEA]
GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024906.2
COORDINATES: protein motif:HMM:NF017416.2
COORDINATES: similar to AA sequence:RefSeq:WP_010608921.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_013407255.1
COORDINATES: similar to AA sequence:RefSeq:WP_009581536.1
COORDINATES: protein motif:HMM:NF024379.2
COORDINATES: protein motif:HMM:NF015325.2
COORDINATES: protein motif:HMM:NF017044.2
COORDINATES: similar to AA sequence:RefSeq:WP_009580120.1
ribonucleoside-diphosphate reductase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010608161.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: protein motif:HMM:NF012946.2
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005687610.1
COORDINATES: similar to AA sequence:RefSeq:WP_012473118.1
COORDINATES: similar to AA sequence:RefSeq:WP_012473063.1
IS481-like element ISCaa11 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_014934536.1
COORDINATES: similar to AA sequence:RefSeq:WP_014934192.1
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: similar to AA sequence:RefSeq:WP_010852991.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009185919.1
COORDINATES: similar to AA sequence:RefSeq:WP_009582902.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472731.1
COORDINATES: similar to AA sequence:RefSeq:WP_020604206.1
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013926434.1
COORDINATES: protein motif:HMM:TIGR00255.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472739.1
COORDINATES: similar to AA sequence:RefSeq:WP_011584052.1
COORDINATES: similar to AA sequence:RefSeq:WP_009284938.1
COORDINATES: similar to AA sequence:RefSeq:WP_019989303.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: similar to AA sequence:RefSeq:WP_010608568.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
COORDINATES: similar to AA sequence:RefSeq:WP_011584832.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018474299.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477938.1
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: similar to AA sequence:RefSeq:WP_019942460.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472754.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020602070.1
YifB family Mg chelatase-like AAA ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_002693904.1
COORDINATES: similar to AA sequence:RefSeq:WP_017731363.1
COORDINATES: protein motif:HMM:TIGR02273.1
GO:0006364 - rRNA processing [Evidence IEA]
Essential for efficient processing of 16S rRNA; Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010611246.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
COORDINATES: similar to AA sequence:RefSeq:WP_008631265.1
COORDINATES: protein motif:HMM:NF039650.1
FtsL-like putative cell division protein
COORDINATES: similar to AA sequence:RefSeq:WP_012472766.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012478.2
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
FKBP-type peptidyl-prolyl cis-trans isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_018476746.1
bifunctional oligoribonuclease/PAP phosphatase NrnA
COORDINATES: protein motif:HMM:TIGR00810.1
COORDINATES: protein motif:HMM:NF016290.2
GO:0019867 - outer membrane [Evidence IEA]
GO:0043165 - Gram-negative-bacterium-type cell outer membrane assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014773862.1
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF013854.2
non-canonical purine NTP pyrophosphatase
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: similar to AA sequence:RefSeq:WP_014934650.1
IS6-like element ISCaa16 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012472780.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
COORDINATES: protein motif:HMM:NF015951.2
COORDINATES: similar to AA sequence:RefSeq:WP_012472783.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome biogenesis GTP-binding protein YihA/YsxC
COORDINATES: protein motif:HMM:TIGR02037.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0005515 - protein binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018479608.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008198113.1
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00135.1
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
COORDINATES: similar to AA sequence:RefSeq:WP_009195983.1
COORDINATES: protein motif:HMM:NF039496.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472790.1
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012472791.1
COORDINATES: similar to AA sequence:RefSeq:WP_015267306.1
COORDINATES: similar to AA sequence:RefSeq:WP_014934318.1
COORDINATES: protein motif:HMM:NF001955.0
GO:0004427 - inorganic diphosphate phosphatase activity [Evidence IEA]; GO:0009678 - pyrophosphate hydrolysis-driven proton transmembrane transporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017732059.1
COORDINATES: protein motif:HMM:NF013827.2
rhomboid family intramembrane serine protease
COORDINATES: protein motif:HMM:NF024575.2
COORDINATES: similar to AA sequence:RefSeq:WP_018476946.1
COORDINATES: similar to AA sequence:RefSeq:WP_000809131.1
COORDINATES: protein motif:HMM:NF014523.2
COORDINATES: similar to AA sequence:RefSeq:WP_011584153.1
COORDINATES: protein motif:HMM:NF040057.1
COORDINATES: protein motif:HMM:NF013117.2
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013452679.1
COORDINATES: similar to AA sequence:RefSeq:WP_018341616.1
COORDINATES: similar to AA sequence:RefSeq:WP_007654747.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: similar to AA sequence:RefSeq:WP_017731735.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477034.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011583504.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017731625.1
pyruvate dehydrogenase complex E1 component subunit beta
COORDINATES: protein motif:HMM:TIGR00159.1
GO:0004016 - adenylate cyclase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472817.1
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: protein motif:HMM:TIGR00705.1
GO:0008233 - peptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013453696.1
COORDINATES: protein motif:HMM:NF013283.2
COORDINATES: similar to AA sequence:RefSeq:WP_020530971.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472824.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018473009.1
Lrp/AsnC family transcriptional regulator
COORDINATES: protein motif:HMM:NF018621.2
COORDINATES: similar to AA sequence:RefSeq:WP_013453585.1
COORDINATES: protein motif:HMM:NF018980.2
COORDINATES: protein motif:HMM:NF015168.2
COORDINATES: protein motif:HMM:NF024571.2
COORDINATES: protein motif:HMM:NF013427.2
TraR/DksA family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009581786.1
COORDINATES: protein motif:HMM:NF037928.2
COORDINATES: similar to AA sequence:RefSeq:WP_012472853.1
COORDINATES: similar to AA sequence:RefSeq:WP_016627252.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472851.1
COORDINATES: protein motif:HMM:NF024724.2
COORDINATES: protein motif:HMM:NF014051.2
COORDINATES: similar to AA sequence:RefSeq:WP_015813158.1
GO:0004518 - nuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472858.1
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00613.1
COORDINATES: protein motif:HMM:NF013915.2
prolipoprotein diacylglyceryl transferase
COORDINATES: protein motif:HMM:NF014657.2
COORDINATES: similar to AA sequence:RefSeq:WP_014934569.1
COORDINATES: protein motif:HMM:NF022472.2
COORDINATES: similar to AA sequence:RefSeq:WP_019988875.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472870.1
COORDINATES: similar to AA sequence:RefSeq:WP_009583530.1
acetyl-CoA carboxylase biotin carboxyl carrier protein
COORDINATES: similar to AA sequence:RefSeq:WP_010609497.1
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: protein motif:HMM:NF013844.2
COORDINATES: similar to AA sequence:RefSeq:WP_012473350.1
COORDINATES: similar to AA sequence:RefSeq:WP_014934544.1
GO:0006950 - response to stress [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009583543.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472888.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009579038.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017733540.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472896.1
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009583647.1
COORDINATES: similar to AA sequence:RefSeq:WP_009583648.1
COORDINATES: similar to AA sequence:RefSeq:WP_017730769.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00215.1
GO:0008915 - lipid-A-disaccharide synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013927128.1
COORDINATES: protein motif:HMM:NF012636.2
COORDINATES: similar to AA sequence:RefSeq:WP_012472908.1
COORDINATES: similar to AA sequence:RefSeq:WP_019986884.1
COORDINATES: similar to AA sequence:RefSeq:WP_008197839.1
COORDINATES: similar to AA sequence:RefSeq:WP_008624459.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0030983 - mismatched DNA binding [Evidence IEA]
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF016289.2
COORDINATES: similar to AA sequence:RefSeq:WP_017732894.1
GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
crossover junction endodeoxyribonuclease RuvC
COORDINATES: protein motif:HMM:NF012657.2
ubiquitin carboxyl-terminal hydrolase family protein
COORDINATES: protein motif:HMM:NF013927.2
COORDINATES: protein motif:HMM:NF012568.2
COORDINATES: similar to AA sequence:RefSeq:WP_019945935.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611877.1
COORDINATES: similar to AA sequence:RefSeq:WP_010610099.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
COORDINATES: similar to AA sequence:RefSeq:WP_007657239.1
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
COORDINATES: protein motif:HMM:NF015871.2
COORDINATES: similar to AA sequence:RefSeq:WP_010611635.1
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010611636.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: similar to AA sequence:RefSeq:WP_015812854.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472940.1
GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IEA]
phosphatidylserine decarboxylase family protein
COORDINATES: protein motif:HMM:NF013661.2
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017730791.1
polysaccharide biosynthesis C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018472694.1
GO:0008837 - diaminopimelate epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472951.1
GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013454313.1
COORDINATES: protein motif:HMM:NF015406.2
COORDINATES: similar to AA sequence:RefSeq:WP_009579620.1
GO:0051301 - cell division [Evidence IEA]
FtsW/RodA/SpoVE family cell cycle protein
COORDINATES: similar to AA sequence:RefSeq:WP_020531376.1
GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_008623890.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012298.2
tetratricopeptide repeat-containing protein kinase family protein
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: protein motif:HMM:NF014704.2
COORDINATES: similar to AA sequence:RefSeq:WP_009580031.1
COORDINATES: similar to AA sequence:RefSeq:WP_019600281.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF019339.2
COORDINATES: similar to AA sequence:RefSeq:WP_009195363.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472974.1
COORDINATES: protein motif:HMM:NF024769.2
COORDINATES: similar to AA sequence:RefSeq:WP_011585114.1
COORDINATES: similar to AA sequence:RefSeq:WP_011585115.1
COORDINATES: similar to AA sequence:RefSeq:WP_012473059.1
COORDINATES: similar to AA sequence:RefSeq:WP_009579302.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019945013.1
COORDINATES: protein motif:HMM:NF016451.2
COORDINATES: similar to AA sequence:RefSeq:WP_012472991.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472253.1
COORDINATES: protein motif:HMM:NF014165.2
COORDINATES: similar to AA sequence:RefSeq:WP_044282811.1
COORDINATES: protein motif:HMM:TIGR01188.1
daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: similar to AA sequence:RefSeq:WP_009583175.1
IS200/IS605-like element ISCaa10 family transposase
COORDINATES: protein motif:HMM:NF012253.2
COORDINATES: similar to AA sequence:RefSeq:WP_017733639.1
COORDINATES: protein motif:HMM:NF040179.1
IS481-like element ISCaa12 family transposase
COORDINATES: protein motif:HMM:NF014581.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF023922.2
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:TIGR01784.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: protein motif:HMM:NF013970.2
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF033537.1
COORDINATES: protein motif:HMM:NF012936.2
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014814.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_012473039.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: similar to AA sequence:RefSeq:WP_009583176.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: similar to AA sequence:RefSeq:WP_018477274.1
COORDINATES: protein motif:HMM:NF025953.2
COORDINATES: similar to AA sequence:RefSeq:WP_012473057.1
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_012473060.1
bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_012473061.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012473062.1
COORDINATES: similar to AA sequence:RefSeq:WP_001138014.1
COORDINATES: protein motif:HMM:NF019984.2
group II intron maturase-specific domain-containing protein
IS5-like element ISCaa13 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_020530718.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008198268.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015266150.1
GO:0016790 - thiolester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008200498.1
GO:0003678 - DNA helicase activity [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: protein motif:HMM:NF036757.2
COORDINATES: similar to AA sequence:RefSeq:WP_012473259.1
IS1182-like element ISCaa15 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012473090.1
COORDINATES: protein motif:HMM:NF037660.2
COORDINATES: similar to AA sequence:RefSeq:WP_012473085.1
COORDINATES: similar to AA sequence:RefSeq:WP_012473084.1
COORDINATES: similar to AA sequence:RefSeq:WP_015810427.1
COORDINATES: protein motif:HMM:NF013986.2
BadF/BadG/BcrA/BcrD ATPase family protein
COORDINATES: protein motif:HMM:NF014200.2
GO:0004175 - endopeptidase activity [Evidence IEA]; GO:0009002 - serine-type D-Ala-D-Ala carboxypeptidase activity [Evidence IEA]
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
COORDINATES: protein motif:HMM:NF014017.2
COORDINATES: protein motif:HMM:NF013212.2
COORDINATES: similar to AA sequence:RefSeq:WP_018479840.1
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008629885.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010611530.1
transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012473104.1
IS110-like element ISCaa14 family transposase
COORDINATES: protein motif:HMM:NF013698.2
COORDINATES: similar to AA sequence:RefSeq:WP_009582768.1
COORDINATES: similar to AA sequence:RefSeq:WP_009194369.1
COORDINATES: similar to AA sequence:RefSeq:WP_020529492.1
COORDINATES: similar to AA sequence:RefSeq:WP_012472716.1
COORDINATES: similar to AA sequence:RefSeq:WP_010609325.1
COORDINATES: similar to AA sequence:RefSeq:WP_009194371.1
COORDINATES: similar to AA sequence:RefSeq:WP_014773503.1
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002004.0
COORDINATES: protein motif:HMM:TIGR00751.1
GO:0046428 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
1,4-dihydroxy-2-naphthoate octaprenyltransferase
COORDINATES: protein motif:HMM:TIGR00225.1
COORDINATES: similar to AA sequence:RefSeq:WP_009185072.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF012709.2
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007656699.1
COORDINATES: similar to AA sequence:RefSeq:WP_009581078.1
COORDINATES: similar to AA sequence:RefSeq:WP_014020111.1
COORDINATES: similar to AA sequence:RefSeq:WP_013455590.1
COORDINATES: similar to AA sequence:RefSeq:WP_009580653.1
COORDINATES: similar to AA sequence:RefSeq:WP_018478129.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018478128.1
metal ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009582875.1
GO:0046872 - metal ion binding [Evidence IEA]
zinc ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013452843.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013452841.1
GO:0016740 - transferase activity [Evidence IEA]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012473147.1
COORDINATES: similar to AA sequence:RefSeq:WP_009196620.1
COORDINATES: similar to AA sequence:RefSeq:WP_003222311.1
COORDINATES: protein motif:HMM:NF014443.2
GO:0015379 - potassium:chloride symporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015957.2
COORDINATES: similar to AA sequence:RefSeq:WP_015812785.1
COORDINATES: similar to AA sequence:RefSeq:WP_148204967.1
GO:0003747 - translation release factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012473158.1
GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF014618.2
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007659301.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012473078.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_020529634.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01214.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017729998.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006423.0
bifunctional phosphoglucose/phosphomannose isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_002695847.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF025431.2
COORDINATES: similar to AA sequence:RefSeq:WP_014934609.1
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: protein motif:HMM:NF018543.2
COORDINATES: protein motif:HMM:NF039278.1
COORDINATES: protein motif:HMM:NF039279.1
COORDINATES: protein motif:HMM:TIGR01646.1
type VI secretion system tip protein VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_014934904.1
COORDINATES: protein motif:HMM:NF016829.2
COORDINATES: protein motif:HMM:NF039901.1
contractile injection system tape measure protein
COORDINATES: similar to AA sequence:RefSeq:WP_019989034.1
COORDINATES: similar to AA sequence:RefSeq:WP_007658043.1
COORDINATES: protein motif:HMM:NF012717.2
COORDINATES: protein motif:HMM:TIGR00247.1
GO:0008932 - lytic endotransglycosylase activity [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00765.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020527881.1
COORDINATES: similar to AA sequence:RefSeq:WP_010856005.1
COORDINATES: similar to AA sequence:RefSeq:WP_018472710.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014934787.1
COORDINATES: similar to AA sequence:RefSeq:WP_009581560.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: protein motif:HMM:NF013401.2
COORDINATES: protein motif:HMM:TIGR01082.1
GO:0008763 - UDP-N-acetylmuramate-L-alanine ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01133.1
GO:0050511 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity [Evidence IEA]
undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017732224.1
GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
DNA topoisomerase (ATP-hydrolyzing) subunit B
COORDINATES: protein motif:HMM:NF014619.2
COORDINATES: protein motif:HMM:NF012575.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00080.1
GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]
protein-L-isoaspartate O-methyltransferase
COORDINATES: protein motif:HMM:NF013933.2
COORDINATES: similar to AA sequence:RefSeq:WP_012473232.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016959.2
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: protein motif:HMM:NF020766.2
GO:0015643 - toxic substance binding [Evidence IEA]
GO:0030153 - bacteriocin immunity [Evidence IEA]
colicin immunity domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014934419.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF012703.2
COORDINATES: similar to AA sequence:RefSeq:WP_020526640.1
COORDINATES: protein motif:HMM:NF024271.2
COORDINATES: protein motif:HMM:NF025494.2
COORDINATES: similar to AA sequence:RefSeq:WP_012473083.1
COORDINATES: similar to AA sequence:RefSeq:WP_002698560.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: similar to AA sequence:RefSeq:WP_017732009.1
COORDINATES: protein motif:HMM:TIGR03511.1
COORDINATES: protein motif:HMM:NF014668.2
COORDINATES: similar to AA sequence:RefSeq:WP_011586954.1
COORDINATES: similar to AA sequence:RefSeq:WP_010608982.1
COORDINATES: similar to AA sequence:RefSeq:WP_014773920.1
COORDINATES: protein motif:HMM:TIGR00545.1
GO:0017118 - lipoyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022481.2
COORDINATES: similar to AA sequence:RefSeq:WP_014934948.1
COORDINATES: similar to AA sequence:RefSeq:WP_011540540.1
COORDINATES: similar to AA sequence:RefSeq:WP_008199483.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
ATP-dependent Clp protease ATP-binding subunit ClpX
COORDINATES: similar to AA sequence:RefSeq:WP_007659411.1
COORDINATES: protein motif:HMM:NF017508.2
GO:0006457 - protein folding [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009194830.1
COORDINATES: similar to AA sequence:RefSeq:WP_019596565.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_009581434.1
DNA-directed RNA polymerase subunit omega
COORDINATES: protein motif:HMM:TIGR03302.1
GO:0065003 - protein-containing complex assembly [Evidence IEA]
outer membrane protein assembly factor BamD
COORDINATES: protein motif:HMM:NF024500.2
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012473282.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012473283.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: protein motif:HMM:NF012621.2
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014934580.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009195175.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012473289.1
COORDINATES: similar to AA sequence:RefSeq:WP_004155427.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012472697.1
COORDINATES: protein motif:HMM:TIGR00732.1
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007652795.1
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
COORDINATES: similar to AA sequence:RefSeq:WP_009195444.1
COORDINATES: protein motif:HMM:NF025871.2
iron-containing redox enzyme family protein
COORDINATES: protein motif:HMM:NF013250.2
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009196677.1
COORDINATES: similar to AA sequence:RefSeq:WP_011586063.1
GO:0009009 - site-specific recombinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009195976.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF018184.2
COORDINATES: similar to AA sequence:RefSeq:WP_013454142.1
COORDINATES: protein motif:HMM:NF015739.2
COORDINATES: similar to AA sequence:RefSeq:WP_017731851.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0043093 - FtsZ-dependent cytokinesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009194716.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012473332.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013989.2
COORDINATES: similar to AA sequence:RefSeq:WP_013927071.1
COORDINATES: similar to AA sequence:RefSeq:WP_010853057.1
COORDINATES: protein motif:HMM:NF017765.2
sodium-dependent bicarbonate transport family permease
COORDINATES: similar to AA sequence:RefSeq:WP_014934209.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013654.2
IS1-like element ISCaa1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012473422.1
COORDINATES: similar to AA sequence:RefSeq:WP_010856949.1
COORDINATES: similar to AA sequence:RefSeq:WP_020528134.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012473364.1
COORDINATES: similar to AA sequence:RefSeq:WP_012473362.1
COORDINATES: protein motif:HMM:NF016629.2
COORDINATES: similar to AA sequence:RefSeq:WP_018478488.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024436.2
penicillin-binding protein activator LpoB
COORDINATES: similar to AA sequence:RefSeq:WP_002703375.1
COORDINATES: similar to AA sequence:RefSeq:WP_009577726.1
GO:0008997 - ribonuclease R activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014934223.1
COORDINATES: similar to AA sequence:RefSeq:WP_009186192.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: protein motif:HMM:NF001159.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012473381.1
COORDINATES: similar to AA sequence:RefSeq:WP_012473388.1
flotillin-like protein involved in membrane lipid rafts; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012930109.1
COORDINATES: similar to AA sequence:RefSeq:WP_012473390.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009194794.1
COORDINATES: similar to AA sequence:RefSeq:WP_013454478.1
COORDINATES: protein motif:HMM:NF022750.2
COORDINATES: protein motif:HMM:NF012492.2
COORDINATES: similar to AA sequence:RefSeq:WP_015267820.1
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
COORDINATES: protein motif:HMM:NF022430.2
COORDINATES: similar to AA sequence:RefSeq:WP_012473400.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009582786.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009582219.1
COORDINATES: similar to AA sequence:RefSeq:WP_008198223.1
nucleoside triphosphate pyrophosphohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_016290826.1
COORDINATES: similar to AA sequence:RefSeq:WP_007655427.1
COORDINATES: similar to AA sequence:RefSeq:WP_019940890.1
COORDINATES: similar to AA sequence:RefSeq:WP_014021262.1
COORDINATES: protein motif:HMM:NF015935.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
COORDINATES: similar to AA sequence:RefSeq:WP_012473409.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018342914.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014934559.1
COORDINATES: protein motif:HMM:NF015734.2
COORDINATES: similar to AA sequence:RefSeq:WP_013452969.1
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_012473417.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF014582.2
COORDINATES: similar to AA sequence:RefSeq:WP_009183402.1
COORDINATES: similar to AA sequence:RefSeq:WP_010609380.1
COORDINATES: protein motif:HMM:NF013396.2
COORDINATES: similar to AA sequence:RefSeq:WP_012473433.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_018476835.1
DNA-directed RNA polymerase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_020606362.1
COORDINATES: similar to AA sequence:RefSeq:WP_012473436.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012473437.1
COORDINATES: similar to AA sequence:RefSeq:WP_012473438.1
COORDINATES: similar to AA sequence:RefSeq:WP_011586523.1
transcription termination/antitermination protein NusG
COORDINATES: similar to AA sequence:RefSeq:WP_009194212.1
COORDINATES: similar to AA sequence:RefSeq:WP_010611224.1
COORDINATES: protein motif:HMM:NF013592.2
COORDINATES: protein motif:HMM:NF024893.2
AsmA-like C-terminal region-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011584676.1
GO:0004799 - thymidylate synthase activity [Evidence IEA]
GO:0006231 - dTMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008625867.1
SpvB/TcaC N-terminal domain-containing protein
neuraminidase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012473290.1
COORDINATES: similar to AA sequence:RefSeq:WP_015265168.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
LPS export ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017731085.1
GO:0008297 - single-stranded DNA exodeoxyribonuclease activity [Evidence IEA]
single-stranded-DNA-specific exonuclease RecJ
COORDINATES: similar to AA sequence:RefSeq:WP_009184344.1
COORDINATES: protein motif:HMM:NF015510.2
outer membrane lipoprotein carrier protein LolA
COORDINATES: protein motif:HMM:NF016300.2
The SIMPL domain is named for its presence in mouse protein SIMPL (signalling molecule that associates with mouse pelle-like kinase). Bacterial member BP26, from Brucella, was shown to assemble into a channel-like structure, while YggE from E. coli has been associated with resistance to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018471982.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007657144.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012473462.1
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: protein motif:HMM:NF025491.2
COORDINATES: similar to AA sequence:RefSeq:WP_010611557.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: protein motif:HMM:NF033057.0
COORDINATES: protein motif:HMM:NF024502.2
phage integrase SAM-like domain-containing protein
COORDINATES: protein motif:HMM:NF012371.2
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024976.2
type I restriction enzyme HsdR N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013890.2
COORDINATES: protein motif:HMM:NF019334.2
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012472627.1
COORDINATES: similar to AA sequence:RefSeq:WP_000578178.1
COORDINATES: similar to AA sequence:RefSeq:WP_012473474.1
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: protein motif:HMM:TIGR01128.1
COORDINATES: similar to AA sequence:RefSeq:WP_017731865.1