Legionella geestiana strain 1308 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.
Diverse conjugative elements silence natural transformation in Legionella species
Submitted (27-MAR-2019) Bacteriology, Hospices Civils de Lyon, 103 grande rue de la Croix Rousse, Lyon 69004, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP038272.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 17-OCT-2018\nAssembly Method :: Unicycler v. 2018-10-17\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 220.0x\nSequencing Technology :: Illumina HiSeq; PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 03:07:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,394\nCDSs (total) :: 2,340\nGenes (coding) :: 2,306\nCDSs (with protein) :: 2,306\nGenes (RNA) :: 54\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 41\nncRNAs :: 4\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 5 of 34\nPseudo Genes (incomplete) :: 30 of 34\nPseudo Genes (internal stop) :: 2 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012535880.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015961495.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187538.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007509002.1
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011212682.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF033591.1
COORDINATES: similar to AA sequence:RefSeq:WP_003089110.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017169491.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012806755.1
COORDINATES: similar to AA sequence:RefSeq:WP_011114056.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020405853.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_017172170.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004086719.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655140.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_015445017.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009292 - horizontal gene transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015445018.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_011114050.1
COORDINATES: protein motif:HMM:NF018934.2
COORDINATES: similar to AA sequence:RefSeq:WP_000753228.1
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_020851112.1
COORDINATES: similar to AA sequence:RefSeq:WP_006869966.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_010676131.1
COORDINATES: similar to AA sequence:RefSeq:WP_010894509.1
COORDINATES: similar to AA sequence:RefSeq:WP_015445026.1
COORDINATES: protein motif:HMM:NF014638.2
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006109 - regulation of carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007806189.1
COORDINATES: protein motif:HMM:NF013395.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002556002.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004091353.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012920.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014631.2
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: similar to AA sequence:RefSeq:WP_003637168.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637169.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003637170.1
COORDINATES: similar to AA sequence:RefSeq:WP_019233026.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871466.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF025217.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019218370.1
COORDINATES: similar to AA sequence:RefSeq:WP_011213412.1
COORDINATES: similar to AA sequence:RefSeq:WP_001687810.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871708.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF025021.2
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005655993.1
COORDINATES: similar to AA sequence:RefSeq:WP_015444998.1
COORDINATES: similar to AA sequence:RefSeq:WP_015444997.1
COORDINATES: similar to AA sequence:RefSeq:WP_015444999.1
COORDINATES: similar to AA sequence:RefSeq:WP_017161207.1
COORDINATES: similar to AA sequence:RefSeq:WP_015445001.1
COORDINATES: similar to AA sequence:RefSeq:WP_012979421.1
conjugal transfer transcriptional regulator TraJ
COORDINATES: similar to AA sequence:RefSeq:WP_011137971.1
TraI/MobA(P) family conjugative relaxase