Croceicoccus marinus strain OT19 plasmid plas2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Croceicoccus.
Submitted (03-AUG-2020) Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, 7 Nanhai Road, Qingdao 266071, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP060054.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Link v. v5.0.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 05:45:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,086\nCDSs (total) :: 4,029\nGenes (coding) :: 3,953\nCDSs (with protein) :: 3,953\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 76\nCDSs (without protein) :: 76\nPseudo Genes (ambiguous residues) :: 0 of 76\nPseudo Genes (frameshifted) :: 28 of 76\nPseudo Genes (incomplete) :: 57 of 76\nPseudo Genes (internal stop) :: 13 of 76\nPseudo Genes (multiple problems) :: 17 of 76\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010543372.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017672274.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF015652.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011508718.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011472075.1
COORDINATES: similar to AA sequence:RefSeq:WP_010100574.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013970.2
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018251286.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007568925.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007406320.1
COORDINATES: similar to AA sequence:RefSeq:WP_011413652.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF019530.2
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
penicillin-insensitive murein endopeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_007406347.1
COORDINATES: similar to AA sequence:RefSeq:WP_007685304.1
COORDINATES: similar to AA sequence:RefSeq:WP_010409243.1
COORDINATES: similar to AA sequence:RefSeq:WP_010409245.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_008828785.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_011950635.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054285.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_007406314.1
COORDINATES: similar to AA sequence:RefSeq:WP_010409251.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406323.1
COORDINATES: similar to AA sequence:RefSeq:WP_017184775.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406315.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950628.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406582.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015614.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_008831574.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_007406330.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_010339789.1
COORDINATES: similar to AA sequence:RefSeq:WP_010408871.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339792.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019092486.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165326.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503550.1
COORDINATES: similar to AA sequence:RefSeq:WP_008831585.1
COORDINATES: similar to AA sequence:RefSeq:WP_010408896.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018250458.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007015484.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183279.1
COORDINATES: similar to AA sequence:RefSeq:WP_008828610.1
COORDINATES: similar to AA sequence:RefSeq:WP_010124618.1
COORDINATES: similar to AA sequence:RefSeq:WP_010408929.1
COORDINATES: similar to AA sequence:RefSeq:WP_015447291.1
COORDINATES: similar to AA sequence:RefSeq:WP_010629755.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013041597.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010408933.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950516.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818778.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054434.1
COORDINATES: similar to AA sequence:RefSeq:WP_010409090.1
COORDINATES: similar to AA sequence:RefSeq:WP_008833214.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183642.1
COORDINATES: similar to AA sequence:RefSeq:WP_006949380.1
COORDINATES: similar to AA sequence:RefSeq:WP_015460589.1
COORDINATES: similar to AA sequence:RefSeq:WP_010409098.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010339717.1
COORDINATES: similar to AA sequence:RefSeq:WP_016510753.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820333.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010409121.1
COORDINATES: similar to AA sequence:RefSeq:WP_019370177.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501072.1
COORDINATES: similar to AA sequence:RefSeq:WP_007163758.1
COORDINATES: similar to AA sequence:RefSeq:WP_008828607.1
COORDINATES: similar to AA sequence:RefSeq:WP_010409134.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011950489.1
COORDINATES: protein motif:HMM:NF022337.2
COORDINATES: similar to AA sequence:RefSeq:WP_010339739.1
COORDINATES: similar to AA sequence:RefSeq:WP_010409149.1
COORDINATES: similar to AA sequence:RefSeq:WP_007881747.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017980147.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020817427.1
COORDINATES: similar to AA sequence:RefSeq:WP_010665990.1
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010667356.1
COORDINATES: similar to AA sequence:RefSeq:WP_012114891.1
COORDINATES: similar to AA sequence:RefSeq:WP_014891287.1
GDCCVxC domain-containing (seleno)protein
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008434956.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212893.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018251188.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406365.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_001262004.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054852.1
COORDINATES: similar to AA sequence:RefSeq:WP_015493510.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_008604015.1
COORDINATES: similar to AA sequence:RefSeq:WP_007013331.1
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016424.2
COORDINATES: similar to AA sequence:RefSeq:WP_013832751.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039456.1
COORDINATES: similar to AA sequence:RefSeq:WP_019371208.1
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_010339748.1
COORDINATES: similar to AA sequence:RefSeq:WP_019370814.1
COORDINATES: similar to AA sequence:RefSeq:WP_010161711.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_086558118.1
COORDINATES: similar to AA sequence:RefSeq:WP_008555792.1
COORDINATES: similar to AA sequence:RefSeq:WP_010124448.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982814.1
COORDINATES: protein motif:HMM:NF024954.2
COORDINATES: similar to AA sequence:RefSeq:WP_017671731.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017671732.1
COORDINATES: similar to AA sequence:RefSeq:WP_010216098.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017979285.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007404025.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007404256.1