Legionella hackeliae strain ATCC 35250 plasmid II, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.
Submitted (26-SEP-2014) INSTITUT PASTEUR, Biology of Intracelullar Bacteria, 28, Rue du Docteur Roux, 75724 Paris Cedex 15, France
REFSEQ INFORMATION: The reference sequence is identical to\nLN681226.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:49:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,212\nCDSs (total) :: 3,153\nGenes (coding) :: 3,120\nCDSs (with protein) :: 3,120\nGenes (RNA) :: 59\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 33\nCDSs (without protein) :: 33\nPseudo Genes (ambiguous residues) :: 0 of 33\nPseudo Genes (frameshifted) :: 12 of 33\nPseudo Genes (incomplete) :: 21 of 33\nPseudo Genes (internal stop) :: 14 of 33\nPseudo Genes (multiple problems) :: 10 of 33\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010655351.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010655352.1
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: similar to AA sequence:RefSeq:WP_014842361.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006869891.1
COORDINATES: similar to AA sequence:RefSeq:WP_011112792.1
PDDEXK nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: similar to AA sequence:RefSeq:WP_010655354.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655355.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212515.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212518.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655362.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655363.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655364.1
COORDINATES: similar to AA sequence:RefSeq:WP_014844020.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655366.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212524.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845084.1
bifunctional GrpB family protein/GNAT family N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_010655372.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010655373.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655374.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845080.1
COORDINATES: protein motif:HMM:NF012371.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014845078.1
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019350454.1
GO:0008658 - penicillin binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014845076.1
GO:0008800 - beta-lactamase activity [Evidence IEA]; GO:0008658 - penicillin binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014845075.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845074.1
COORDINATES: similar to AA sequence:RefSeq:WP_005771201.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845073.1
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: similar to AA sequence:RefSeq:WP_010655390.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655391.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655392.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_019232607.1
COORDINATES: similar to AA sequence:RefSeq:WP_007618271.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017020027.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011212547.1
aminoglycoside adenylyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019350461.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655397.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014845063.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655399.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655400.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010655401.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655402.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845058.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655405.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845056.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845055.1
COORDINATES: similar to AA sequence:RefSeq:WP_012979009.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845053.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845052.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845051.1
COORDINATES: similar to AA sequence:RefSeq:WP_014841723.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655413.1
COORDINATES: similar to AA sequence:RefSeq:WP_010652568.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_018577984.1
COORDINATES: similar to AA sequence:RefSeq:WP_006870994.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655415.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014845049.1
bifunctional GNAT family N-acetyltransferase/aminoglycoside 3'-phosphotransferase/choline kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845048.1
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655419.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019349572.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655421.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845039.1
COORDINATES: similar to AA sequence:RefSeq:WP_006870497.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845037.1
COORDINATES: similar to AA sequence:RefSeq:WP_003632074.1
COORDINATES: protein motif:HMM:NF024917.2
COORDINATES: similar to AA sequence:RefSeq:WP_010655429.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655430.1
COORDINATES: protein motif:HMM:NF024803.2
COORDINATES: protein motif:HMM:NF014954.2
COORDINATES: similar to AA sequence:RefSeq:WP_006871161.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845031.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212584.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212585.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235358.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212587.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845026.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235354.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235283.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655442.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235284.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019235285.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:YP_009351859.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019235286.1
COORDINATES: similar to AA sequence:RefSeq:NP_819053.1
COORDINATES: similar to AA sequence:RefSeq:WP_006872172.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235290.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637166.1
GO:0015333 - peptide:proton symporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003637165.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637164.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212465.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235295.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450452.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235297.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450448.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347307.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450445.1
COORDINATES: similar to AA sequence:RefSeq:WP_006869963.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212604.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655324.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655325.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_013347308.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_019235302.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347310.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_013347311.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450431.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347313.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235307.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_019235308.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_004450424.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_011212488.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_010655336.1
type-F conjugative transfer system mating-pair stabilization protein TraN
putative pilus assembly and synthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_004450417.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_010655338.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_014845138.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235315.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004450411.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_019235317.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_019235318.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235319.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655346.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655347.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655348.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655349.1
COORDINATES: protein motif:HMM:NF015205.2