Kocuria flava strain HO-9041 plasmid 1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Kocuria.
Complete Genome Sequence of Kocuria flava strain HO-9041
Submitted (24-NOV-2015) Food and Pharmaceutical Engineering, Hubei University of Technology, 28 Nanli Street, Wuhan, Hubei 430068, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP013255.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAP denovo v. 2.04\nGenome Coverage :: 505\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 20:16:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,304\nCDSs (total) :: 3,242\nGenes (coding) :: 3,189\nCDSs (with protein) :: 3,189\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 53\nCDSs (without protein) :: 53\nPseudo Genes (ambiguous residues) :: 0 of 53\nPseudo Genes (frameshifted) :: 18 of 53\nPseudo Genes (incomplete) :: 34 of 53\nPseudo Genes (internal stop) :: 5 of 53\nPseudo Genes (multiple problems) :: 4 of 53\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011691966.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_003805335.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009482803.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014674143.1
COORDINATES: similar to AA sequence:RefSeq:WP_017833775.1
COORDINATES: similar to AA sequence:RefSeq:WP_014374322.1
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF009466.0
COORDINATES: similar to AA sequence:RefSeq:WP_012776287.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_012890983.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005507611.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: similar to AA sequence:RefSeq:WP_017831821.1
COORDINATES: similar to AA sequence:RefSeq:WP_018775085.1
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003797688.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017831820.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016997201.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831817.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831816.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831815.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006769594.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831813.1
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: similar to AA sequence:RefSeq:WP_017831811.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_086557958.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001389195.1
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016996871.1
plasmid mobilization relaxosome protein MobC
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017834367.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689715.1
COORDINATES: similar to AA sequence:RefSeq:WP_017834435.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832679.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017832680.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832681.1
COORDINATES: protein motif:HMM:NF016491.2
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017832683.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832684.1
COORDINATES: protein motif:HMM:NF024139.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017832689.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019481165.1
COORDINATES: similar to AA sequence:RefSeq:WP_006901488.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: protein motif:HMM:NF023390.2
COORDINATES: similar to AA sequence:RefSeq:WP_018763702.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003798333.1
COORDINATES: similar to AA sequence:RefSeq:WP_015937003.1
COORDINATES: similar to AA sequence:RefSeq:WP_017834552.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017935717.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832111.1
COORDINATES: protein motif:HMM:NF014567.2
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_012397393.1
COORDINATES: similar to AA sequence:RefSeq:WP_017833187.1
COORDINATES: similar to AA sequence:RefSeq:WP_006214108.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019309314.1
PRC and DUF2382 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012687132.1
COORDINATES: similar to AA sequence:RefSeq:WP_010592261.1
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: similar to AA sequence:RefSeq:WP_011562586.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831926.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831925.1
COORDINATES: similar to AA sequence:RefSeq:WP_016997378.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832691.1
COORDINATES: protein motif:HMM:NF023227.2
COORDINATES: similar to AA sequence:RefSeq:WP_016997370.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832697.1
COORDINATES: protein motif:HMM:NF027488.2
COORDINATES: similar to AA sequence:RefSeq:WP_019309920.1
COORDINATES: similar to AA sequence:RefSeq:WP_018441919.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019311210.1
COORDINATES: similar to AA sequence:RefSeq:WP_009647625.1