Acetobacter senegalensis strain 108B plasmid 1P, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.
Submitted (02-SEP-2014) Vrije Universiteit Brussel, IMDO, Pleinlaan 2, 1050, Belgium
REFSEQ INFORMATION: The reference sequence is identical to\nLN606601.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 13:03:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,650\nCDSs (total) :: 3,573\nGenes (coding) :: 3,471\nCDSs (with protein) :: 3,471\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 102\nCDSs (without protein) :: 102\nPseudo Genes (ambiguous residues) :: 0 of 102\nPseudo Genes (frameshifted) :: 49 of 102\nPseudo Genes (incomplete) :: 61 of 102\nPseudo Genes (internal stop) :: 22 of 102\nPseudo Genes (multiple problems) :: 24 of 102\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010504724.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009488589.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007284615.1
COORDINATES: similar to AA sequence:RefSeq:WP_018307576.1
COORDINATES: similar to AA sequence:RefSeq:WP_010666723.1
COORDINATES: similar to AA sequence:RefSeq:WP_014095397.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284620.1
COORDINATES: similar to AA sequence:RefSeq:WP_014095395.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007284650.1
COORDINATES: similar to AA sequence:RefSeq:WP_010667336.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284652.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007284653.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007284654.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284719.1
COORDINATES: similar to AA sequence:RefSeq:WP_010667381.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284688.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284689.1
COORDINATES: similar to AA sequence:RefSeq:WP_010665807.1
COORDINATES: similar to AA sequence:RefSeq:WP_010665809.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284693.1
COORDINATES: similar to AA sequence:RefSeq:WP_006752806.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284576.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284575.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284574.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284573.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284572.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284571.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284570.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284568.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284567.1
COORDINATES: similar to AA sequence:RefSeq:WP_012553437.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS5-like element IS12528 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_019088725.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813401.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019088727.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088728.1
COORDINATES: similar to AA sequence:RefSeq:WP_007400748.1
ArsO family NAD(P)H-dependent flavin-containing monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_003618725.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007400750.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115730.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007397884.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_010665820.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284438.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284439.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003537101.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010665819.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284442.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_010665818.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284444.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF033894.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284446.1
COORDINATES: similar to AA sequence:RefSeq:WP_018009783.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_010665815.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284448.1
COORDINATES: similar to AA sequence:RefSeq:WP_010665814.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007284610.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284612.1
COORDINATES: similar to AA sequence:RefSeq:WP_010338000.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012225828.1
COORDINATES: similar to AA sequence:RefSeq:WP_007283828.1
COORDINATES: protein motif:HMM:NF025088.2
COORDINATES: similar to AA sequence:RefSeq:WP_006560442.1
COORDINATES: similar to AA sequence:RefSeq:WP_014106734.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088713.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018291074.1
COORDINATES: similar to AA sequence:RefSeq:WP_006560453.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006560454.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019092503.1
COORDINATES: similar to AA sequence:RefSeq:WP_010511395.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076612098.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_006560347.1
COORDINATES: similar to AA sequence:RefSeq:WP_012226833.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033550.5
COORDINATES: similar to AA sequence:RefSeq:WP_012643596.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012976042.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_012812354.1
COORDINATES: protein motif:HMM:NF026041.2