Nostoc sphaeroides strain Kutzing En plasmid p3, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Nostoc.
Evidence for the Nostoc sphaeroides, a unique species of cyanobacteria with high nutritional and medicinal value: from a genomic perspective
Submitted (28-AUG-2018) Key Laboratory of Biological Resources Protection and Utilization of Hubei Province, Hubei University for Nationalities, 39 Xueyuan Road, Enshi 445000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP031944.1.\nBacteria and source DNA available from Cheng Chao, Hubei University\nfor Nationalities China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. Oct-2013\nAssembly Name :: HBEN_NSP_1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 168.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 00:12:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,093\nCDSs (total) :: 6,005\nGenes (coding) :: 5,761\nCDSs (with protein) :: 5,761\nGenes (RNA) :: 88\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 4\nPseudo Genes (total) :: 244\nCDSs (without protein) :: 244\nPseudo Genes (ambiguous residues) :: 0 of 244\nPseudo Genes (frameshifted) :: 83 of 244\nPseudo Genes (incomplete) :: 168 of 244\nPseudo Genes (internal stop) :: 36 of 244\nPseudo Genes (multiple problems) :: 37 of 244\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025579.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_010994168.1
COORDINATES: protein motif:HMM:NF013124.2
COORDINATES: similar to AA sequence:RefSeq:WP_009630228.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015118917.1
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013325789.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488174.1
COORDINATES: similar to AA sequence:RefSeq:WP_015214252.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488194.1
COORDINATES: similar to AA sequence:RefSeq:WP_017742143.1
COORDINATES: similar to AA sequence:RefSeq:WP_015207858.1
COORDINATES: similar to AA sequence:RefSeq:WP_009454344.1
COORDINATES: similar to AA sequence:RefSeq:WP_015214272.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496354.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016873813.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012412830.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412829.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413392.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413391.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_012412826.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF012318.2