Legionella pneumophila strain C9_S plasmid unamed2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.
Genomic Analysis Reveals Novel Diversity among the 1976 Philadelphia Legionnaires' Disease Outbreak Isolates and Additional ST36 Strains
Submitted (27-MAY-2016) Pneumonia Response and Surveillance Laboratory, Respiratory Diseases Branch, Centers for Disease Control and Prevention, 1600 Clifton Road, NE, Atlanta, GA 30333, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP015943.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 01:12:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,140\nCDSs (total) :: 3,084\nGenes (coding) :: 3,069\nCDSs (with protein) :: 3,069\nGenes (RNA) :: 56\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 15\nCDSs (without protein) :: 15\nPseudo Genes (ambiguous residues) :: 0 of 15\nPseudo Genes (frameshifted) :: 5 of 15\nPseudo Genes (incomplete) :: 11 of 15\nPseudo Genes (internal stop) :: 3 of 15\nPseudo Genes (multiple problems) :: 4 of 15\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014845125.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014845124.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011212624.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019232989.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014845120.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655443.1
COORDINATES: protein motif:HMM:NF014841.2
COORDINATES: similar to AA sequence:RefSeq:WP_018576859.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015445050.1
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006109 - regulation of carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006869750.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010947781.1
MazG nucleotide pyrophosphohydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011946188.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014845121.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019234169.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF014385.2
COORDINATES: similar to AA sequence:RefSeq:WP_019234171.1
COORDINATES: similar to AA sequence:RefSeq:WP_019234172.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871703.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871702.1
COORDINATES: similar to AA sequence:RefSeq:WP_011213877.1
IS21-like element ISLpn12 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_014844325.1
IS21-like element ISLpn12 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_015444310.1
COORDINATES: similar to AA sequence:RefSeq:WP_015444309.1
COORDINATES: similar to AA sequence:RefSeq:WP_013101349.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011215159.1
COORDINATES: similar to AA sequence:RefSeq:WP_011946103.1
COORDINATES: similar to AA sequence:RefSeq:WP_011215157.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015961499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871693.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013101343.1
COORDINATES: similar to AA sequence:RefSeq:WP_013101342.1
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF014631.2
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: similar to AA sequence:RefSeq:WP_014845159.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845158.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655322.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845156.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845155.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845154.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845153.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845152.1
GO:0005576 - extracellular region [Evidence IEA]
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_014845151.1
type IV conjugative transfer system protein TraL
COORDINATES: protein motif:HMM:NF017152.2
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845149.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_014845148.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845147.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845146.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845145.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845144.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_004450424.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_014845142.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_014845141.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_014845140.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_014845139.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_014845138.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845137.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845136.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845135.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_014845134.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_014845133.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845132.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845131.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845129.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845128.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845127.1