Legionella pneumophila strain C9_S plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.
Genomic Analysis Reveals Novel Diversity among the 1976 Philadelphia Legionnaires' Disease Outbreak Isolates and Additional ST36 Strains
Submitted (27-MAY-2016) Pneumonia Response and Surveillance Laboratory, Respiratory Diseases Branch, Centers for Disease Control and Prevention, 1600 Clifton Road, NE, Atlanta, GA 30333, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP015942.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 01:12:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,140\nCDSs (total) :: 3,084\nGenes (coding) :: 3,069\nCDSs (with protein) :: 3,069\nGenes (RNA) :: 56\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 15\nCDSs (without protein) :: 15\nPseudo Genes (ambiguous residues) :: 0 of 15\nPseudo Genes (frameshifted) :: 5 of 15\nPseudo Genes (incomplete) :: 11 of 15\nPseudo Genes (internal stop) :: 3 of 15\nPseudo Genes (multiple problems) :: 4 of 15\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019233008.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_019233009.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_019233010.1
COORDINATES: similar to AA sequence:RefSeq:WP_012979163.1
COORDINATES: similar to AA sequence:RefSeq:WP_019233012.1
COORDINATES: similar to AA sequence:RefSeq:WP_019233013.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_019233014.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_019233015.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_019233016.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212473.1
COORDINATES: protein motif:HMM:NF017619.2
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019350373.1
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:TIGR00697.1
GO:1990397 - queuosine salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: similar to AA sequence:RefSeq:WP_014845120.1
COORDINATES: similar to AA sequence:RefSeq:WP_006683031.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871879.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010655087.1
COORDINATES: similar to AA sequence:RefSeq:WP_019232994.1
COORDINATES: similar to AA sequence:RefSeq:WP_019232995.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_019350392.1
COORDINATES: similar to AA sequence:RefSeq:WP_019232999.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_019233001.1
conjugal transfer mating-pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_019233002.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212617.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_019233004.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_019233005.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_019233006.1
type-F conjugative transfer system pilin assembly protein TrbC