Borreliella valaisiana VS116 plasmid VS116_lp17, complete sequence.
type: Entry
definition: Borreliella valaisiana VS116 plasmid VS116_lp17, complete sequence.
sequence version: NC_012180.1
sequence date: 2023-04-24
sequence: sequence
division: CON
label: NC_012180.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02436326
keyword: RefSeq
source: Borreliella valaisiana VS116
organism: Borreliella valaisiana VS116
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
references: 22207749
reference: 2
reference: 3
reference: 4
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001439.1.\nLinear plasmids are missing a portion of the telomeric-like regions\nat the ends. The chromosome for this strain has been deposited\nunder the Whole Genome Shotgun project accession ABCY00000000. The\nDNA or cells for this strains can be obtained from Sherwood Casjens\n(Univ. of Utah, sherwood.casjens@path.utah.edu) or Benjamin J. Luft\n(SUNY at Stony Brook, bluft@notes.cc.sunysb.edu).\nThe DNA or cells for this strains can be obtained from Sherwood\nCasjens (Univ. of Utah, sherwood.casjens@path.utah.edu) or Benjamin\nJ. Luft (SUNY at Stony Brook, bluft@notes.cc.sunysb.edu)\nThis WGS record is a draft assembly, and may contain collapsed\nrepeats, missassemblies and/or low quality consensus bases. The\nplasmids were deposited in GenBank Accession Numbers\nCP001432-CP001442.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 01:26:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,249\nCDSs (total) :: 1,209\nGenes (coding) :: 1,142\nCDSs (with protein) :: 1,142\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 67\nCDSs (without protein) :: 67\nPseudo Genes (ambiguous residues) :: 0 of 67\nPseudo Genes (frameshifted) :: 49 of 67\nPseudo Genes (incomplete) :: 16 of 67\nPseudo Genes (internal stop) :: 41 of 67\nPseudo Genes (multiple problems) :: 33 of 67\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 20024
topology: linear
so has quality: SO_0000987
location: 1..20024
location: region:1-20024:1
RO_0002162: 445987

NC_012180
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02436326
type: BioSample
SIO_000068: biosample

1
title: Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii
author: Schutzer, S.E.
author: Fraser-Liggett, C.M.
author: Qiu, W.G.
author: Kraiczy, P.
author: Mongodin, E.F.
author: Dunn, J.J.
author: Luft, B.J.
author: Casjens, S.R.
journal: J Bacteriol
volume: 194
issue: 2
pages: 545-546
year: 2012
pubmed: 22207749

22207749
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, B.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
author: Sebastian, Y.
journal: Submitted (12-FEB-2009) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

3
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, B.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
author: Sebastian, Y.
journal: Submitted (06-JAN-2009) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

4
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, S.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
journal: Submitted (12-JUN-2007) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20024:1
position: 20024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20024:1:source
so part of: sequence
organism: Borreliella valaisiana VS116
mol type: genomic DNA
strain: VS116
type material: type strain of Borreliella valaisiana
plasmid: VS116_lp17

445987
type: Taxonomy
SIO_000068: taxonomy

BVAVS116_RS06720
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06720
old locus tag: BVAVS116_D0001
so part of: sequence
location: 685..1659
location: region:685-1659:1
so has part: feature:685-1659:1:exon
subclass of: SO_0000010

71696727
type: Gene
SIO_000068: ncbigene

position:685:1
position: 685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1659:1
position: 1659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:685-1659:1:exon

BVAVS116_RS06720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06720
old locus tag: BVAVS116_D0001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012614932.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: immunogenic protein P37
translation: MNLMIKEVLMISSLFCSVISCKLYKKLTDKTKQTLANNKYFVNNNKSINSTNKLDNNSLDSAEDNNRSGRKARSISSGEANTQEQNNKNKSKEKENIIKKSEESNNLETQINNNLNTKRSNTNKVDNNKHNAGRRSQQVNKKSNEAITAREIMYEAETFLEKTEKITVDLETTKSKLDKIKSVIEETRSYLNTARKSKYNTNNNTLLLHNLNQEINKVNSSHASAKSHCNDAIGALARSKNDFENAKRKAEGALEETIKDIPSLGYNYLYYSWITDAQKAIKNAKSLFENAKNKQEELNDKMNKTNLELIKLEQAYKVLQTKKS
SIO_010081: BVAVS116_RS06720
subclass of: SO_0000673
so part of: BVAVS116_RS06720
location: 685..1659
location: region:685-1659:1
so has part: feature:685-1659:1:exon

WP_234925307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:685-1659:1:exon

BVAVS116_RS06490
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06490
so part of: sequence
location: complement(1717..1857)
location: region:1717-1857:-1
so has part: feature:1717-1857:-1:exon
subclass of: SO_0000010

63642001
type: Gene
SIO_000068: ncbigene

position:1717:-1
position: 1717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1857:-1
position: 1857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1717-1857:-1:exon

BVAVS116_RS06490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06490
inference: COORDINATES: protein motif:HMM:NF033729.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MKNPKLNIIKLNFITAILNSIFISCVSIGKVNSKPHINTSPENNQN
SIO_010081: BVAVS116_RS06490
subclass of: SO_0000673
so part of: BVAVS116_RS06490
location: complement(1717..1857)
location: region:1717-1857:-1
so has part: feature:1717-1857:-1:exon

WP_158309990.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1717-1857:-1:exon

BVAVS116_RS05410
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05410
old locus tag: BVAVS116_D0002
so part of: sequence
location: complement(2054..2899)
location: region:2054-2899:-1
so has part: feature:2054-2899:-1:exon
subclass of: SO_0000010

63641839
type: Gene
SIO_000068: ncbigene

position:2054:-1
position: 2054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2899:-1
position: 2899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2054-2899:-1:exon

BVAVS116_RS05410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05410
old locus tag: BVAVS116_D0002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540538.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MKNSKLNIIKLNVITAILTAICISCAPFGNVNPNKLKNPTTSKTPKKVKRSNNSRNLKNLNSNTNSENSSENNKNLENEYQNSKSSNQNSQEETTISKLENIGKGLEAQKKEENTQIAKMAAKSDGVQYDFLETFKLKRDDYFMFHAKMQLKRIIYPSLNYDTKKILALKEILEKLDTDNNRRVASKFLRTSKDIQHQLEDVRLKKIQDALLRTLSKKEAETLLQAVKDDLKIKQNFAKALNATIDAYNKNVGDIKTNDEALANHINDKYSHPLYLLNQAD
SIO_010081: BVAVS116_RS05410
subclass of: SO_0000673
so part of: BVAVS116_RS05410
location: complement(2054..2899)
location: region:2054-2899:-1
so has part: feature:2054-2899:-1:exon

WP_012665745.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2054-2899:-1:exon

BVAVS116_RS05425
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05425
old locus tag: BVAVS116_D0006
so part of: sequence
location: complement(4721..5449)
location: region:4721-5449:-1
so has part: feature:4721-5449:-1:exon
subclass of: SO_0000010

63641840
type: Gene
SIO_000068: ncbigene

position:4721:-1
position: 4721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5449:-1
position: 5449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4721-5449:-1:exon

BVAVS116_RS05425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05425
old locus tag: BVAVS116_D0006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012665364.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: OspD family protein
translation: MKKLIKILLSSLFLLLSISCSLDNEGVNSKDYESKKQSILGKLNQLLGQTTNSLKEAKNTTDNLNASNEANKVVEAVIIAVNLISSAADQVKGATKNMHDLAQMAEIDLEKIKESSDKAIVAANVAKEAYNLTKAAEQNMQKLYKEQEKQLGTPSGSDGIEQASDEIKQAQKAVEIAWKATVKAKDELIDVENAVKEALDKIKTETANNTKLSDIEEVAELVLQIANNVKEIAQEVVALLNT
SIO_010081: BVAVS116_RS05425
subclass of: SO_0000673
so part of: BVAVS116_RS05425
location: complement(4721..5449)
location: region:4721-5449:-1
so has part: feature:4721-5449:-1:exon

WP_012665749.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4721-5449:-1:exon

BVAVS116_RS05430
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05430
old locus tag: BVAVS116_D0011
so part of: sequence
location: 8490..8753
location: region:8490-8753:1
so has part: feature:8490-8753:1:exon
subclass of: SO_0000010

63641841
type: Gene
SIO_000068: ncbigene

position:8490:1
position: 8490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8753:1
position: 8753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8490-8753:1:exon

BVAVS116_RS05430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05430
old locus tag: BVAVS116_D0011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257665.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5425 family lipoprotein
translation: MNKKFIISLLFIISTFLLVFSCDLSINSDQNKMDGDLDYKCLLSKKESGKLKNSQIKDDNNSNNSYYFRVSNYSNSYSKTYSSCKTK
SIO_010081: BVAVS116_RS05430
subclass of: SO_0000673
so part of: BVAVS116_RS05430
location: 8490..8753
location: region:8490-8753:1
so has part: feature:8490-8753:1:exon

WP_012665754.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8490-8753:1:exon

BVAVS116_RS05435
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05435
old locus tag: BVAVS116_D0013
so part of: sequence
location: complement(9043..9273)
location: region:9043-9273:-1
so has part: feature:9043-9273:-1:exon
subclass of: SO_0000010

63641842
type: Gene
SIO_000068: ncbigene

position:9043:-1
position: 9043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9273:-1
position: 9273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9043-9273:-1:exon

BVAVS116_RS05435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05435
old locus tag: BVAVS116_D0013
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIVLVVIIIINNVLRLTYIKVFNFLIFIIVFCMLLSFAIKNCKKTATENKDNDYNNTDFSLELDYKCKNNKKVNLL
SIO_010081: BVAVS116_RS05435
subclass of: SO_0000673
so part of: BVAVS116_RS05435
location: complement(9043..9273)
location: region:9043-9273:-1
so has part: feature:9043-9273:-1:exon

WP_148271173.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9043-9273:-1:exon

BVAVS116_RS05440
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05440
old locus tag: BVAVS116_D0016
so part of: sequence
location: complement(10750..11847)
location: region:10750-11847:-1
so has part: feature:10750-11847:-1:exon
subclass of: SO_0000010

63641843
type: Gene
SIO_000068: ncbigene

position:10750:-1
position: 10750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11847:-1
position: 11847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10750-11847:-1:exon

BVAVS116_RS05440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05440
old locus tag: BVAVS116_D0016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703994.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MIIKIRNNVNKNFNNLITLEELIKHNQKNTNSNLIELKQSRLKSYLTKKKTIYKRILKVCWAIELKNKEYYKSNKLKTYSTIEIYNIVNKCLAKDNQKTSIRTLEYDISFLNQALLITTKLKHLGKDNGSFAFYIQNKNLWKHRFKVIQEAINEEIKEYLKDKKIVSDFSKEIDNTIKKNKIKPKSSSADESIADVIPKGIKDIDKIKNSIIEENEKKNNISYKEYITRKLIKVHKIEKLQITKILKISNNEKTYVNALRNLNSAIEKYKKEYKIVDISNHFIKEFKNKYSKKIWMMNGKTDKINDFNEIWETRFKKTSLNKNLRENYQNDYIKSKKNIFNRDKRINISFSNNKGFKKINKIKIN
SIO_010081: BVAVS116_RS05440
subclass of: SO_0000673
so part of: BVAVS116_RS05440
location: complement(10750..11847)
location: region:10750-11847:-1
so has part: feature:10750-11847:-1:exon

WP_012665759.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10750-11847:-1:exon

BVAVS116_RS05445
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05445
old locus tag: BVAVS116_D0017
so part of: sequence
location: complement(12003..12329)
location: region:12003-12329:-1
so has part: feature:12003-12329:-1:exon
subclass of: SO_0000010

63641844
type: Gene
SIO_000068: ncbigene

position:12003:-1
position: 12003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12329:-1
position: 12329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12003-12329:-1:exon

BVAVS116_RS05445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05445
old locus tag: BVAVS116_D0017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257662.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSINGVRLYSLKEFQNILEDSYNLSISKNTISKKSKILKCAIHVDNRPYLLEDFCTYFLMDFRRPKPITNSMKETIQLRIEQAKKIMNRKSTKHEIQIVSKHMGHIL
SIO_010081: BVAVS116_RS05445
subclass of: SO_0000673
so part of: BVAVS116_RS05445
location: complement(12003..12329)
location: region:12003-12329:-1
so has part: feature:12003-12329:-1:exon

WP_012665760.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12003-12329:-1:exon

BVAVS116_RS05450
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05450
old locus tag: BVAVS116_D0018
so part of: sequence
location: complement(12479..13486)
location: region:12479-13486:-1
so has part: feature:12479-13486:-1:exon
subclass of: SO_0000010

63641845
type: Gene
SIO_000068: ncbigene

position:12479:-1
position: 12479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13486:-1
position: 13486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12479-13486:-1:exon

BVAVS116_RS05450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05450
old locus tag: BVAVS116_D0018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703992.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNPNLLYKFQSASIGEIVYTDPRSIINTYFVKNKKIFIVNPIAFKFELNFEKIIKTNSKENITLKTFKGGIISLKLRSNEFSKLPTDILKGKLEFYINYVSEEKLKIVYDMVTVKVYTIDLKTSNKDEIYQIELKIIGSIYRKENIENTFIPIIKNNNTYLFENKANNQKVNLLLKGINKIIELPSLTKISYSNIKIINNADIKTSENFNVNIKTTNRMLLNLSTKIYEELILTNSNQIKTINNKQKILKTLRSFIENENGLGGKIRLIFLEKTNFLNKNLNSNNLDFVLNDINIIQENSYIKIDITLLEDKIEKKYLNQTPNINPFLKNITLL
SIO_010081: BVAVS116_RS05450
subclass of: SO_0000673
so part of: BVAVS116_RS05450
location: complement(12479..13486)
location: region:12479-13486:-1
so has part: feature:12479-13486:-1:exon

WP_012665761.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12479-13486:-1:exon

BVAVS116_RS05455
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05455
old locus tag: BVAVS116_D0020
so part of: sequence
location: 13662..14240
location: region:13662-14240:1
so has part: feature:13662-14240:1:exon
subclass of: SO_0000010

63641846
type: Gene
SIO_000068: ncbigene

position:13662:1
position: 13662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14240:1
position: 14240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13662-14240:1:exon

BVAVS116_RS05455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05455
old locus tag: BVAVS116_D0020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012614979.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNANFVVKNFILVFFLISCQTYQIAYDRFSQVLDSQYDVGVNYSRDGIFKSVISIKYDKVKNKREYFILVKVEARNSSQIKLEKIITDTRFESKGELVSENSKRVVYYNDFYDSYFPYDYTTVITEKNIKVEIYKFNISESEFMKFVALGNDNIAAFRIYAFRNDVVVSFSKISFKKFLDDFNLKAKELGSS
SIO_010081: BVAVS116_RS05455
subclass of: SO_0000673
so part of: BVAVS116_RS05455
location: 13662..14240
location: region:13662-14240:1
so has part: feature:13662-14240:1:exon

WP_012665763.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13662-14240:1:exon

BVAVS116_RS05460
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05460
old locus tag: BVAVS116_D0021
so part of: sequence
location: complement(14385..15068)
location: region:14385-15068:-1
so has part: feature:14385-15068:-1:exon
subclass of: SO_0000010

63641847
type: Gene
SIO_000068: ncbigene

position:14385:-1
position: 14385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15068:-1
position: 15068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14385-15068:-1:exon

BVAVS116_RS05460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05460
old locus tag: BVAVS116_D0021
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010258240.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSKTFIFLIFLIQNLAIYAQNTNYEFKQTKIKNIKGIFINYKVYLTENLAIDNVKTLNHVSTFKINLVVDKKIAASIKNEEDVIRAGNECGIFLEFQINNRTYYTKFSSIKYILKAIESFTQIKNTINNLEIKNLEGNGIFLYKNGLSYNLKTDFQETAIFVNFLGFKDNTGRPYFIFYYDSIDNKDKNLKTILISFEEFHNGIREGLFLLRNEKAILEFINLSKD
SIO_010081: BVAVS116_RS05460
subclass of: SO_0000673
so part of: BVAVS116_RS05460
location: complement(14385..15068)
location: region:14385-15068:-1
so has part: feature:14385-15068:-1:exon

WP_012665764.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14385-15068:-1:exon

BVAVS116_RS05470
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05470
old locus tag: BVAVS116_D0023
so part of: sequence
location: complement(15863..16522)
location: region:15863-16522:-1
so has part: feature:15863-16522:-1:exon
subclass of: SO_0000010

63641848
type: Gene
SIO_000068: ncbigene

position:15863:-1
position: 15863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16522:-1
position: 16522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15863-16522:-1:exon

BVAVS116_RS05470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05470
old locus tag: BVAVS116_D0023
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257672.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQKEITKNYNEYTIGGIKETFFGNSQYEANYRAKINGFIIDFFKIPISLKKKYELNIKALSDPNFSSTNIAMNCINTFKLIVDVVNMQTGENYDYDTFITKTETEKMLKYGTKIIAALARHFDEKHKTNFNESYYEWEKGWVDKKWIDYEPTEAEIKEIQTMNQKLNPLINNEEKTFNKGQIKLLKAINKIESQSQQHHAKPKSTAKKLKGNRRKEVEI
SIO_010081: BVAVS116_RS05470
subclass of: SO_0000673
so part of: BVAVS116_RS05470
location: complement(15863..16522)
location: region:15863-16522:-1
so has part: feature:15863-16522:-1:exon

WP_012665766.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15863-16522:-1:exon

BVAVS116_RS05475
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05475
old locus tag: BVAVS116_D0024
so part of: sequence
location: 17007..17747
location: region:17007-17747:1
so has part: feature:17007-17747:1:exon
subclass of: SO_0000010

63641849
type: Gene
SIO_000068: ncbigene

position:17007:1
position: 17007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17747:1
position: 17747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17007-17747:1:exon

BVAVS116_RS05475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05475
old locus tag: BVAVS116_D0024
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540544.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKKIAFHIQKGGVGKTTLSGNIASYLSKTKKVALVDCDIQQGSSSTWFLNHEILRLDIKDCLLKKVDIDQVLKQIQKNFYILPCVPSGTFRRDVQHELQDFPYLIDDFCLELEKLGFEIAIFDLSPSFELWERRIILAMCEVVTPLTPEFLSLEGINIFKEEFDSLLKSYRKKVKHEKIICNMLNKSFKRHNIHLRQFKTFGYDLYEIGQDAKIAESQLYKKSIFDYYPESKSILGLSRLGDALCL
SIO_010081: BVAVS116_RS05475
subclass of: SO_0000673
so part of: BVAVS116_RS05475
location: 17007..17747
location: region:17007-17747:1
so has part: feature:17007-17747:1:exon

WP_012665767.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17007-17747:1:exon

BVAVS116_RS05480
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05480
so part of: sequence
location: 17738..18010
location: region:17738-18010:1
so has part: feature:17738-18010:1:exon
subclass of: SO_0000010

63641850
type: Gene
SIO_000068: ncbigene

position:17738:1
position: 17738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18010:1
position: 18010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17738-18010:1:exon

BVAVS116_RS05480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257680.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPISKEVDLEEIIKQNVSKSKFAFRGDNDVVCNNIPNIKPGRSKMMIKQISVGLKYEYWVEFYSILDKKGLTASGFIRTLIMEYIETSKK
SIO_010081: BVAVS116_RS05480
subclass of: SO_0000673
so part of: BVAVS116_RS05480
location: 17738..18010
location: region:17738-18010:1
so has part: feature:17738-18010:1:exon

WP_040351401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17738-18010:1:exon

BVAVS116_RS05485
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05485
old locus tag: BVAVS116_D0026
so part of: sequence
location: complement(19343..19933)
location: region:19343-19933:-1
so has part: feature:19343-19933:-1:exon
subclass of: SO_0000010

63641851
type: Gene
SIO_000068: ncbigene

position:19343:-1
position: 19343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19933:-1
position: 19933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19343-19933:-1:exon

BVAVS116_RS05485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05485
old locus tag: BVAVS116_D0026
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFIDDKNQEYFTLKEIQIMQNKSIKKNTIYIKLLRLEKQGKIIPYKPSQNIKAFKKYGKKSINLYPKEQILKYFTTPSFLTDYNLNKHFPKYNLLELVKNAITFEEFAIKIYKNPIILPSKSYYFKILKKTNPNYVLDLDQYGLFKTLNKDYIDNILFIFNSKPREKRINVKCDKLSKKNKKKETRKIFGWKLFKK
SIO_010081: BVAVS116_RS05485
subclass of: SO_0000673
so part of: BVAVS116_RS05485
location: complement(19343..19933)
location: region:19343-19933:-1
so has part: feature:19343-19933:-1:exon

WP_040351402.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19343-19933:-1:exon