Borreliella valaisiana VS116 plasmid VS116_lp28-8, complete sequence.
type: Entry
definition: Borreliella valaisiana VS116 plasmid VS116_lp28-8, complete sequence.
sequence version: NC_012169.1
sequence date: 2023-04-24
sequence: sequence
division: CON
label: NC_012169.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02436326
keyword: RefSeq
source: Borreliella valaisiana VS116
organism: Borreliella valaisiana VS116
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
references: 22207749
reference: 2
reference: 3
reference: 4
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001442.1.\nLinear plasmids are missing a portion of the telomeric-like regions\nat the ends. The chromosome for this strain has been deposited\nunder the Whole Genome Shotgun project accession ABCY00000000. The\nDNA or cells for this strains can be obtained from Sherwood Casjens\n(Univ. of Utah, sherwood.casjens@path.utah.edu) or Benjamin J. Luft\n(SUNY at Stony Brook, bluft@notes.cc.sunysb.edu).\nThe DNA or cells for this strains can be obtained from Sherwood\nCasjens (Univ. of Utah, sherwood.casjens@path.utah.edu) or Benjamin\nJ. Luft (SUNY at Stony Brook, bluft@notes.cc.sunysb.edu)\nThis WGS record is a draft assembly, and may contain collapsed\nrepeats, missassemblies and/or low quality consensus bases. The\nplasmids were deposited in GenBank Accession Numbers\nCP001432-CP001442.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 01:26:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,249\nCDSs (total) :: 1,209\nGenes (coding) :: 1,142\nCDSs (with protein) :: 1,142\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 67\nCDSs (without protein) :: 67\nPseudo Genes (ambiguous residues) :: 0 of 67\nPseudo Genes (frameshifted) :: 49 of 67\nPseudo Genes (incomplete) :: 16 of 67\nPseudo Genes (internal stop) :: 41 of 67\nPseudo Genes (multiple problems) :: 33 of 67\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18022
topology: linear
so has quality: SO_0000987
location: 1..18022
location: region:1-18022:1
RO_0002162: 445987

NC_012169
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02436326
type: BioSample
SIO_000068: biosample

1
title: Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii
author: Schutzer, S.E.
author: Fraser-Liggett, C.M.
author: Qiu, W.G.
author: Kraiczy, P.
author: Mongodin, E.F.
author: Dunn, J.J.
author: Luft, B.J.
author: Casjens, S.R.
journal: J Bacteriol
volume: 194
issue: 2
pages: 545-546
year: 2012
pubmed: 22207749

22207749
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, B.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
author: Sebastian, Y.
journal: Submitted (12-FEB-2009) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

3
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, B.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
author: Sebastian, Y.
journal: Submitted (06-JAN-2009) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

4
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, S.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
journal: Submitted (12-JUN-2007) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18022:1
position: 18022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18022:1:source
so part of: sequence
organism: Borreliella valaisiana VS116
mol type: genomic DNA
strain: VS116
type material: type strain of Borreliella valaisiana
plasmid: VS116_lp28-8

445987
type: Taxonomy
SIO_000068: taxonomy

BVAVS116_RS06055
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06055
old locus tag: BVAVS116_N0002
so part of: sequence
location: complement(1626..2171)
location: region:1626-2171:-1
so has part: feature:1626-2171:-1:exon
subclass of: SO_0000010

63641949
type: Gene
SIO_000068: ncbigene

position:1626:-1
position: 1626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2171:-1
position: 2171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1626-2171:-1:exon

BVAVS116_RS06055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06055
old locus tag: BVAVS116_N0002
EC number: 3.4.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486302.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO process: GO:0071586 - CAAX-box protein processing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CPBP family intramembrane metalloprotease
translation: MNTRNAVLFMKRFCYFASFFIIVYFNLFAIDMPPLRLKHVFLIIFVPIITISLEIFLSYFLNKKVPVFFIGTDNYNMSYFISVIFMAIAEEYVFRLLIFDFFLEKLQCDLLVVMLLSAFAYGFNHIHFGLAIFISKFLIGIIYFLVFFIFKDFYCVVLIHVLSNIIVFGLSFLQIKGKLCF
SIO_010081: BVAVS116_RS06055
subclass of: SO_0000673
so part of: BVAVS116_RS06055
location: complement(1626..2171)
location: region:1626-2171:-1
so has part: feature:1626-2171:-1:exon

WP_244427567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1626-2171:-1:exon

BVAVS116_RS06060
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06060
old locus tag: BVAVS116_N0003
so part of: sequence
location: complement(2221..3546)
location: region:2221-3546:-1
so has part: feature:2221-3546:-1:exon
subclass of: SO_0000010

63641950
type: Gene
SIO_000068: ncbigene

position:2221:-1
position: 2221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3546:-1
position: 3546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2221-3546:-1:exon

BVAVS116_RS06060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06060
old locus tag: BVAVS116_N0003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486303.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YcaO-like family protein
translation: MINYYPYSSKLYRDLVFTNSPATGIGPALVTLLPFQKGLPLLYSSTCILPNYHKILIGEAYNMEYHISGYGRSYEEAITRLQGETIERYSLLMSKTLFQEDFILSSRKSLLNTSKYKVMPLEYRNVFSDLDRNFNLPYTKVCESDEIYWILLPSLIHSNEKIWVPCDMIFMGIHQNFKMPTFSTGTAVHRSVEIALSNAIIEVIQLHCYISNWYMKSKRPVIDWKSNKFLRKSIGDLELESYFDLVILDYSDRDLGMPVYAAFLRNKKKSIPYLVCGIQGGFNKEYVLLRAVEEAAVVAQSLPLIYFFKAREISNLTLNSLRHSFNLDDNFLYYSNLNEISLKDSLLNSIMDNETRLEISSEENLVENELNMSLSILRSVSKYAVYCDITPPELESTSFKSIRILVPELLKMCFPFHPFDEHPYFKKKGEILDEYYPHPIP
SIO_010081: BVAVS116_RS06060
subclass of: SO_0000673
so part of: BVAVS116_RS06060
location: complement(2221..3546)
location: region:2221-3546:-1
so has part: feature:2221-3546:-1:exon

WP_012665421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2221-3546:-1:exon

BVAVS116_RS06065
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06065
old locus tag: BVAVS116_N0004
so part of: sequence
location: complement(3558..4604)
location: region:3558-4604:-1
so has part: feature:3558-4604:-1:exon
subclass of: SO_0000010

63641951
type: Gene
SIO_000068: ncbigene

position:3558:-1
position: 3558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4604:-1
position: 4604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3558-4604:-1:exon

BVAVS116_RS06065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06065
old locus tag: BVAVS116_N0004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486304.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNNGLYYFSDNVRVLKESKGFLIVRKGVWNYEDLIISIEDSYINELSKVFNSLSSDEGIDLIQIKNNKVKNIVKELINSGFVHLNEFRINNRFLNYLYFGQYLEVVPQENPYLLISDDSSLINILETTAKSFDLKYELLSHENLEFLKTPVFLNKLDLMRYSKSLDHFRSKFMPFEGVIMLLGNLNPFLLRNINRILIGLNKPIFFGTIDGPFMLITCLEPKRTACIECYEQRIIARMTDHVLYHRFNKEYEKHKRNTELISSGDFLSPAYYHIAYILVGDAFTFFQVKTSKLMGRALHIYVPFFEFQNQDVLRISSCPACGYLSTYKSRCLNIETQKLVSTLISNSN
SIO_010081: BVAVS116_RS06065
subclass of: SO_0000673
so part of: BVAVS116_RS06065
location: complement(3558..4604)
location: region:3558-4604:-1
so has part: feature:3558-4604:-1:exon

WP_012665422.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3558-4604:-1:exon

BVAVS116_RS06070
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06070
old locus tag: BVAVS116_N0005
so part of: sequence
location: complement(4617..5543)
location: region:4617-5543:-1
so has part: feature:4617-5543:-1:exon
subclass of: SO_0000010

63641952
type: Gene
SIO_000068: ncbigene

position:4617:-1
position: 4617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5543:-1
position: 5543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4617-5543:-1:exon

BVAVS116_RS06070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06070
old locus tag: BVAVS116_N0005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486305.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SagB/ThcOx family dehydrogenase
translation: MVKNDNESSEVFNMKLSGMYEINNVSRSVFNSNIIAIPSNIRIKASLFDKDAESLTLNYLLNFSEIKKFYFNENISKFLQDPAAIANISNREYREFDDDDDVVFLPKVKRLKIKLEDALLKRKSYRKFKNQYLNLVDLSTLLYYAAGDVRYDYVEFGNSKLRQSRKPYPSGGGMYPIDIYFYVNNVEKLDKGFYLYQSSNNSIVKINIGSIKIENLLTISFFEGSSNFNIAFFFVYRYEVNYLKYSEMSLSFAFIELGAIHQNFSLVSTALNLGYCSWGGFDKPELEKCLKLDGISEHVVSAAILGNV
SIO_010081: BVAVS116_RS06070
subclass of: SO_0000673
so part of: BVAVS116_RS06070
location: complement(4617..5543)
location: region:4617-5543:-1
so has part: feature:4617-5543:-1:exon

WP_012665423.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4617-5543:-1:exon

BVAVS116_RS06075
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06075
old locus tag: BVAVS116_N0006
so part of: sequence
location: complement(5941..6939)
location: region:5941-6939:-1
so has part: feature:5941-6939:-1:exon
subclass of: SO_0000010

63641953
type: Gene
SIO_000068: ncbigene

position:5941:-1
position: 5941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6939:-1
position: 6939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5941-6939:-1:exon

BVAVS116_RS06075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06075
old locus tag: BVAVS116_N0006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890368.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKVIVFLICFNLFSKELNNLKINGIGFDFDMDYLSMPNTFDLSLYYVLNDSKISPFIGLGSDYYKTILFASGISYFFRNFFSKVFYEIRAPFNFDKKYIEHIGNFLFGYNFYYFKFENTLTIGVINNLLTVDNIENVYSNTLTLKNKISLLVPIYYSEFQRMDTKAVFVYKYLLGGEDQIYKVYWNFKYLFSMFFGELGFKVDFLKSGSLFETDLETRVDYQALNLYPLALPFLDDPNSIFNTIFNFGFEYRVFFLEYLRNAFSDLFLSISFDIGYGFDDVFVDNGKFLYITSFGIGYKLFREVPFVFRMGINQDKQFMLGFIVSSINFDN
SIO_010081: BVAVS116_RS06075
subclass of: SO_0000673
so part of: BVAVS116_RS06075
location: complement(5941..6939)
location: region:5941-6939:-1
so has part: feature:5941-6939:-1:exon

WP_012665424.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5941-6939:-1:exon

BVAVS116_RS06080
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06080
old locus tag: BVAVS116_N0007
so part of: sequence
location: complement(6957..7991)
location: region:6957-7991:-1
so has part: feature:6957-7991:-1:exon
subclass of: SO_0000010

63641954
type: Gene
SIO_000068: ncbigene

position:6957:-1
position: 6957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7991:-1
position: 7991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6957-7991:-1:exon

BVAVS116_RS06080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06080
old locus tag: BVAVS116_N0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486308.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MELAKFLLFCFLLIIPSFLFSNIIIKEQLGLSSNFSYFFSDYDEKDFLGTGIFSFENEFYLGVFINHGIFEFGVAPSLTIKKEQHYLSFKNLFLNFYFDSLIIKLGKQNYHLGSGLIENIILERIKDSEEWLAEIYYFVSNYIFSFGAILDEFSLDGLEKSKYLSPWTYFQLSFPKLDLLLMVETPFNLENSNIDIKFIFDLSVEIYSGLFFYSTIRHDLLYDQNYVFRSEDNRYLLGSRYYIDFENGILNSIAFVFEGYLKSNNHYISTGFILTWIEGLLKTSCFLKTNLNDNAWQIYFESNFDITKGFSLKIKSIYEPFEKKILLKNMPFNQILSIGISFKV
SIO_010081: BVAVS116_RS06080
subclass of: SO_0000673
so part of: BVAVS116_RS06080
location: complement(6957..7991)
location: region:6957-7991:-1
so has part: feature:6957-7991:-1:exon

WP_012665425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6957-7991:-1:exon

BVAVS116_RS06085
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06085
old locus tag: BVAVS116_N0008
so part of: sequence
location: complement(8005..8736)
location: region:8005-8736:-1
so has part: feature:8005-8736:-1:exon
subclass of: SO_0000010

63641955
type: Gene
SIO_000068: ncbigene

position:8005:-1
position: 8005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8736:-1
position: 8736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8005-8736:-1:exon

BVAVS116_RS06085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06085
old locus tag: BVAVS116_N0008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486309.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFNNFIVIICLCVSSFLYSNESNSLVKDFSRLAFPNIEPGVYVVNLVYEIYLDGVLKEKSKGFSIINSNNSNSCLVYTEGKKLDIAFLVIRDTGYFMLSSKSSNPIKVSPSYKVKGISSLQDIIGLRFEEDFSFLEKRNKNLLKFKTKKASLYPFVDLIRYDSNKFSTLHKDRNSHVLREVLYKKGLISGISAFSSIEVVDRIFENHRTIVYTKNFSKTNLNNSIFTMKGFLRVFDIAKNYLK
SIO_010081: BVAVS116_RS06085
subclass of: SO_0000673
so part of: BVAVS116_RS06085
location: complement(8005..8736)
location: region:8005-8736:-1
so has part: feature:8005-8736:-1:exon

WP_012665426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8005-8736:-1:exon

BVAVS116_RS06090
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06090
old locus tag: BVAVS116_N0009
so part of: sequence
location: complement(8729..9955)
location: region:8729-9955:-1
so has part: feature:8729-9955:-1:exon
subclass of: SO_0000010

63641956
type: Gene
SIO_000068: ncbigene

position:8729:-1
position: 8729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9955:-1
position: 9955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8729-9955:-1:exon

BVAVS116_RS06090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06090
old locus tag: BVAVS116_N0009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890369.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FtsX-like permease family protein
translation: MLKLAFFNIFRDVRRSMMVSFLLSSSVVFLLLFIGYMNYSSEGMEMGLVSSTGHIQIARKNYFNPKFSGIKNNLVLKDFEILQIKNEINKYSEFKYSNLIVNFEGLIGNSFASKPFFATAFEDPDFATKSLSLVDGNPLFDSSVGDFLIGSSLAMSLGIENLTKENSKLTLMTDMLGEGLALQDIRLSGIVKFPVIQTDSMVVITSINTLKSFFDFKDGAHLIQVYLKNNSFLNSFKNKLDYLRNKSNIDFEYNDWYEINPSFKSIVGINKIMFKFLAILIILMIFISFFQIMTALSLERTRELGTLRAIGLTKLELFCTLFLEIFILAVINIILGIAISYFLKLIIGFQQIRFSPPGYTESYFINFSYYFSDICFVSFFIFLVAIISSVLPFIKASKRSIVEVINNV
SIO_010081: BVAVS116_RS06090
subclass of: SO_0000673
so part of: BVAVS116_RS06090
location: complement(8729..9955)
location: region:8729-9955:-1
so has part: feature:8729-9955:-1:exon

WP_012665427.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8729-9955:-1:exon

BVAVS116_RS06095
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06095
old locus tag: BVAVS116_N0010
so part of: sequence
location: complement(9980..10324)
location: region:9980-10324:-1
so has part: feature:9980-10324:-1:exon
subclass of: SO_0000010

63641957
type: Gene
SIO_000068: ncbigene

position:9980:-1
position: 9980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10324:-1
position: 10324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9980-10324:-1:exon

BVAVS116_RS06095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06095
old locus tag: BVAVS116_N0010
inference: COORDINATES: protein motif:HMM:NF012235.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding cassette domain-containing protein
translation: MKLSVNTINKSYKIFKEIVHTNKYISFSLKSKDMVWLSGPTGSGKTTLIDLISGIDIIDSGEIVLDCFVLSSMKDKQRTFFRKCNIEKDVIGLFVLHNFSLEEFANRFFQNRRW
SIO_010081: BVAVS116_RS06095
subclass of: SO_0000673
so part of: BVAVS116_RS06095
location: complement(9980..10324)
location: region:9980-10324:-1
so has part: feature:9980-10324:-1:exon

WP_012665428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9980-10324:-1:exon

BVAVS116_RS06100
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06100
old locus tag: BVAVS116_N0011
so part of: sequence
location: complement(10350..11126)
location: region:10350-11126:-1
so has part: feature:10350-11126:-1:exon
subclass of: SO_0000010

63641958
type: Gene
SIO_000068: ncbigene

position:10350:-1
position: 10350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11126:-1
position: 11126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10350-11126:-1:exon

BVAVS116_RS06100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06100
old locus tag: BVAVS116_N0011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486312.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLKSGLLIFFISFNLFAFDNDVEKYIEKIEEIHTNYYSVGLKFDILNYAKMLIFSLSKIENNILSNYRERSLKFNYFNLLISLVFCDIAYLIDDVDEYKNLINRVLNKYSVKASFNFHEFSDYFRALGELALNLIVHDSSNSYFYIIDGKRFLDKALMIDNQNYKVNLPLAIFYTSGITNKTFSKNFFALYYLNRAEETFVNKRQRYLKEIVKSSFLIRNNRRVEAIDCLQSACKIFPNGYLAGIAFEKLKKGKPFF
SIO_010081: BVAVS116_RS06100
subclass of: SO_0000673
so part of: BVAVS116_RS06100
location: complement(10350..11126)
location: region:10350-11126:-1
so has part: feature:10350-11126:-1:exon

WP_012665429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10350-11126:-1:exon

BVAVS116_RS06105
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06105
old locus tag: BVAVS116_N0012
so part of: sequence
location: complement(11158..11964)
location: region:11158-11964:-1
so has part: feature:11158-11964:-1:exon
subclass of: SO_0000010

63641959
type: Gene
SIO_000068: ncbigene

position:11158:-1
position: 11158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11964:-1
position: 11964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11158-11964:-1:exon

BVAVS116_RS06105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06105
old locus tag: BVAVS116_N0012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486313.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKFFFNCLFFLILNFNLLYSNSFEALNIEYNNILEKYYSGDNNNNKFVLKEQSDYINFYIDKFKTLYGKLESFKDSRKNYLTSIVNLQIASLVQSVNVKNSSDSYSIFLSTKGVLLDFISSSFFKDCQKSIRSDAYRVLGDLNLSILRYMGGIKLVKISNEAKNALIKSLEIDNKNVFANISLATWYLYSPRISGGSPKKAIEFLQKALKYSKKSLEKYLTNVWLSQGYFRLKRENEYKRHLNEAKNIFPDGLFHKIVIERNNLGELP
SIO_010081: BVAVS116_RS06105
subclass of: SO_0000673
so part of: BVAVS116_RS06105
location: complement(11158..11964)
location: region:11158-11964:-1
so has part: feature:11158-11964:-1:exon

WP_012665430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11158-11964:-1:exon

BVAVS116_RS06110
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06110
old locus tag: BVAVS116_N0013
so part of: sequence
location: complement(12213..13088)
location: region:12213-13088:-1
so has part: feature:12213-13088:-1:exon
subclass of: SO_0000010

63641960
type: Gene
SIO_000068: ncbigene

position:12213:-1
position: 12213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13088:-1
position: 13088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12213-13088:-1:exon

BVAVS116_RS06110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06110
old locus tag: BVAVS116_N0013
inference: COORDINATES: protein motif:HMM:NF033730.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MNIKRDLKLTYIDIYINLNCYNKENILKKNNLIIIIYFLSFSSCNSANSALKNKDFEFNQSEKIIEANLKLDENHLKSEVVQDDLIVKIIEITKRIRSKIILDRAKIEPLDQFGMKDFVFNNLIVDSNREKYSHNENKDIRRKFYSSLNYNEKLIRVFGKILNKISSNVDNQNLDLLIVKAGQYYSQYELEYSAEKINEQMDKLINLNIGELSLILSKLKELMTFKTRWIDIINQIVSYCENNINLNDIKDDLGKMIGCIEYINSKYEYFFKYEILKTEILSSEITKILDK
SIO_010081: BVAVS116_RS06110
subclass of: SO_0000673
so part of: BVAVS116_RS06110
location: complement(12213..13088)
location: region:12213-13088:-1
so has part: feature:12213-13088:-1:exon

WP_012665431.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12213-13088:-1:exon

BVAVS116_RS06115
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06115
old locus tag: BVAVS116_N0014
so part of: sequence
location: complement(13370..13948)
location: region:13370-13948:-1
so has part: feature:13370-13948:-1:exon
subclass of: SO_0000010

63641961
type: Gene
SIO_000068: ncbigene

position:13370:-1
position: 13370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13948:-1
position: 13948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13370-13948:-1:exon

BVAVS116_RS06115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06115
old locus tag: BVAVS116_N0014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257375.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MNKKNINEIAINPRNLNHNKNSILNANNDVQAFNDKERFEFLKNKLKDNVKEDIYNKIEAMYILMEIKNKAYYKLDGYKSFEKFIKDYRLARSQAYTYLKIAGAIKEGVLKQEYLVENGFRQSMLFLINHENEVGKLPNQSSKKFLRLQLKNQESYFFYKKNYKFTEFFLDKVFLDKKDWIEQIMKEFKEKI
SIO_010081: BVAVS116_RS06115
subclass of: SO_0000673
so part of: BVAVS116_RS06115
location: complement(13370..13948)
location: region:13370-13948:-1
so has part: feature:13370-13948:-1:exon

WP_012665432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13370-13948:-1:exon

BVAVS116_RS06120
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06120
old locus tag: BVAVS116_N0015
so part of: sequence
location: complement(13979..14794)
location: region:13979-14794:-1
so has part: feature:13979-14794:-1:exon
subclass of: SO_0000010

63641962
type: Gene
SIO_000068: ncbigene

position:13979:-1
position: 13979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14794:-1
position: 14794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13979-14794:-1:exon

BVAVS116_RS06120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06120
old locus tag: BVAVS116_N0015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257373.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDRKRTKIITIASIKGGVGKSTSAIILATILSKEYKVLLIDIDTQASTTSYFYEKLKENNIDIERKNICEVLKNNLDINSVTVNVGNNLTLIPSYLTLHSLNGDFYCLNKHKAIDLKLKMEIKRLKINYDYIVIDTNPSLDLTLRCALNATHYIVIPMTAEKWTFESYELLEFFIKSLEKLVPIFFIITRFKKTNTHKELLKIMQKKNNFLGVVSEKEGLNKKIATNSEFDLNSNYILEYNYILKNLISHIKIYSEKMETLKINCPALDNL
SIO_010081: BVAVS116_RS06120
subclass of: SO_0000673
so part of: BVAVS116_RS06120
location: complement(13979..14794)
location: region:13979-14794:-1
so has part: feature:13979-14794:-1:exon

WP_012665433.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13979-14794:-1:exon

BVAVS116_RS06125
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06125
old locus tag: BVAVS116_N0016
so part of: sequence
location: complement(14770..15330)
location: region:14770-15330:-1
so has part: feature:14770-15330:-1:exon
subclass of: SO_0000010

63641963
type: Gene
SIO_000068: ncbigene

position:14770:-1
position: 14770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15330:-1
position: 15330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14770-15330:-1:exon

BVAVS116_RS06125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06125
old locus tag: BVAVS116_N0016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002662174.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MKNLLEKLKEKKTKIKPERNNNIFVKIEKKDDKSIYHTKIFLDFHAFGTKKNQNYRFLISFRKLLDRKKTEAFSLFSLKDEDKFLGINYGCRKPIKNVLRRYEENNKLKTATFSKIHYIRFKFKKGSIFCYVVGISYLLRKDKIKKKYYKSLIKILLTLEKEIYEFYNKKLSNGGIITKWIEKEQK
SIO_010081: BVAVS116_RS06125
subclass of: SO_0000673
so part of: BVAVS116_RS06125
location: complement(14770..15330)
location: region:14770-15330:-1
so has part: feature:14770-15330:-1:exon

WP_012665434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14770-15330:-1:exon

BVAVS116_RS06130
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06130
old locus tag: BVAVS116_N0017
so part of: sequence
location: complement(15340..16434)
location: region:15340-16434:-1
so has part: feature:15340-16434:-1:exon
subclass of: SO_0000010

63641964
type: Gene
SIO_000068: ncbigene

position:15340:-1
position: 15340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16434:-1
position: 16434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15340-16434:-1:exon

BVAVS116_RS06130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06130
old locus tag: BVAVS116_N0017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486318.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MEKVERFKNKYQHKLIVLVSTLCYVNNNHKKYSQSNILYYFNENLKRNGQNPIKIKTLQNYLYSLEKEFEVTTNYYKHLGVNCGTEIYYKLKYQKQKCYHKINQYFKEKKEIRFNSRVSTFFKTPQPKKGSVELKECSNNNNNKEEEKETIKKIENLQIKNYARKCKFITSSFSKIIDLNIKKNIKIEMLKEIKKIENFFKKNFYKNHKKNKTIKVKKKELSILLEENKRILEKEGLNKKKLDTYFQCVYSKYENKPHFILDCNKYDDLKKIINKIKKNINKNNIKTTKKNIKNNILNILFEQLKIKSEIDNEILIKIIKIYLNQIEKPKYTDLFNNKYYDELLELIKNKNNLKNFFINQKVIS
SIO_010081: BVAVS116_RS06130
subclass of: SO_0000673
so part of: BVAVS116_RS06130
location: complement(15340..16434)
location: region:15340-16434:-1
so has part: feature:15340-16434:-1:exon

WP_012665435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15340-16434:-1:exon

BVAVS116_RS06540
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06540
old locus tag: BVAVS116_N0019
so part of: sequence
location: complement(16706..18019)
location: region:16706-18019:-1
so has part: feature:16706-18019:-1:exon
subclass of: SO_0000010

63642010
type: Gene
SIO_000068: ncbigene

position:16706:-1
position: 16706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18019:-1
position: 18019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16706-18019:-1:exon

BVAVS116_RS06540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06540
old locus tag: BVAVS116_N0019
inference: COORDINATES: protein motif:HMM:NF013114.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: variable large family protein
translation: MLKDVEAARDGAANKDAGKLFKTTGGGGLADAAAVAKAAAAVSAVSGKQIIKAIVDAAGEDQQAGEKAAEAANPIAAAIGTNRDAGAGFNNGRMQNNGKIAAAIVLRGLAKDGKFAASNDNGAKKESVNSVVESAVGEMSTWLEDMIKAAAGDAANGAAGKEANKESVKEIAKGIKGIVDAAGKSGGNALKDVVAAGDNDANKDAGKLFKTHAALDDVAAVAKAAAAVSAVSGKQIIKAIVDAAGAGADQQGAEAAQATNPIAAAIGTDRDNAAAGFNAMQNNGKIAAAIVLRGLAKDGKFAANNNNGGKAVNVNSVVGEMSAWLEDMIKAAGDAIKGAAAGPIGNAANEQGKEANEESVNGIAKEIKGIVDAAGKAGGKDGNGLKDVEAVNDGNANADAGKLFKTRAGGGLAAGDVAKAAAAVSAVSGKADNKSDC
SIO_010081: BVAVS116_RS06540
subclass of: SO_0000673
so part of: BVAVS116_RS06540
location: complement(16706..18019)
location: region:16706-18019:-1
so has part: feature:16706-18019:-1:exon

WP_012665437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16706-18019:-1:exon