Borreliella valaisiana VS116 plasmid VS116_lp25, complete sequence.
type: Entry
definition: Borreliella valaisiana VS116 plasmid VS116_lp25, complete sequence.
sequence version: NC_012166.1
sequence date: 2023-04-24
sequence: sequence
division: CON
label: NC_012166.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02436326
keyword: RefSeq
source: Borreliella valaisiana VS116
organism: Borreliella valaisiana VS116
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
references: 22207749
reference: 2
reference: 3
reference: 4
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001437.1.\nLinear plasmids are missing a portion of the telomeric-like regions\nat the ends. The chromosome for this strain has been deposited\nunder the Whole Genome Shotgun project accession ABCY00000000. The\nDNA or cells for this strains can be obtained from Sherwood Casjens\n(Univ. of Utah, sherwood.casjens@path.utah.edu) or Benjamin J. Luft\n(SUNY at Stony Brook, bluft@notes.cc.sunysb.edu).\nThe DNA or cells for this strains can be obtained from Sherwood\nCasjens (Univ. of Utah, sherwood.casjens@path.utah.edu) or Benjamin\nJ. Luft (SUNY at Stony Brook, bluft@notes.cc.sunysb.edu)\nThis WGS record is a draft assembly, and may contain collapsed\nrepeats, missassemblies and/or low quality consensus bases. The\nplasmids were deposited in GenBank Accession Numbers\nCP001432-CP001442.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 01:26:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,249\nCDSs (total) :: 1,209\nGenes (coding) :: 1,142\nCDSs (with protein) :: 1,142\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 67\nCDSs (without protein) :: 67\nPseudo Genes (ambiguous residues) :: 0 of 67\nPseudo Genes (frameshifted) :: 49 of 67\nPseudo Genes (incomplete) :: 16 of 67\nPseudo Genes (internal stop) :: 41 of 67\nPseudo Genes (multiple problems) :: 33 of 67\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 32795
topology: linear
so has quality: SO_0000987
location: 1..32795
location: region:1-32795:1
RO_0002162: 445987

NC_012166
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02436326
type: BioSample
SIO_000068: biosample

1
title: Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii
author: Schutzer, S.E.
author: Fraser-Liggett, C.M.
author: Qiu, W.G.
author: Kraiczy, P.
author: Mongodin, E.F.
author: Dunn, J.J.
author: Luft, B.J.
author: Casjens, S.R.
journal: J Bacteriol
volume: 194
issue: 2
pages: 545-546
year: 2012
pubmed: 22207749

22207749
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, B.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
author: Sebastian, Y.
journal: Submitted (12-FEB-2009) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

3
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, B.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
author: Sebastian, Y.
journal: Submitted (06-JAN-2009) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

4
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, S.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
journal: Submitted (12-JUN-2007) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32795:1
position: 32795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32795:1:source
so part of: sequence
organism: Borreliella valaisiana VS116
mol type: genomic DNA
strain: VS116
type material: type strain of Borreliella valaisiana
plasmid: VS116_lp25

445987
type: Taxonomy
SIO_000068: taxonomy

BVAVS116_RS05185
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05185
old locus tag: BVAVS116_E0002
pseudo: true
so part of: sequence
location: <551..1114
location: region:551-1114:1
so has part: feature:551-1114:1:exon
subclass of: SO_0000010

63641800
type: Gene
SIO_000068: ncbigene

position:551:1
position: 551
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:1114:1
position: 1114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:551-1114:1:exon

BVAVS116_RS05185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05185
old locus tag: BVAVS116_E0002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703842.1
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: S2/P23 family protein
SIO_010081: BVAVS116_RS05185
subclass of: SO_0000673
so part of: BVAVS116_RS05185
location: <551..1114
location: region:551-1114:1
so has part: feature:551-1114:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:551-1114:1:exon

BVAVS116_RS06820
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06820
old locus tag: BVAVS116_E0005
so part of: sequence
location: 2249..2443
location: region:2249-2443:1
so has part: feature:2249-2443:1:exon
subclass of: SO_0000010

80265105
type: Gene
SIO_000068: ncbigene

position:2249:1
position: 2249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2443:1
position: 2443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2249-2443:1:exon

BVAVS116_RS06820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06820
old locus tag: BVAVS116_E0005
inference: COORDINATES: protein motif:HMM:NF013053.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: isochorismatase family protein
translation: MNTLFIAGLALDFCVKETIFDAINLGFQVCLILDATKSITTTPELIIQELKKLNVLTCFSKDIF
SIO_010081: BVAVS116_RS06820
subclass of: SO_0000673
so part of: BVAVS116_RS06820
location: 2249..2443
location: region:2249-2443:1
so has part: feature:2249-2443:1:exon

WP_280109769.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2249-2443:1:exon

BVAVS116_RS05200
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05200
old locus tag: BVAVS116_E0006
so part of: sequence
location: 2621..3703
location: region:2621-3703:1
so has part: feature:2621-3703:1:exon
subclass of: SO_0000010

63641802
type: Gene
SIO_000068: ncbigene

position:2621:1
position: 2621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3703:1
position: 3703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2621-3703:1:exon

BVAVS116_RS05200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05200
old locus tag: BVAVS116_E0006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486447.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MEVNKYPQTKSKYQYKLIALIATLEYVNKTKKKYCQSDILYCFNGNLKRNGQKEVSIKTLRNYFYKLEKLNITINYYRHLGINMGTEIYYTLRHSKKDCYNIINQYFREKKKERFQKRVNSYIKINYSKKDSVKNGECFNNKYNKEEKEENKKEVQINKLKLKKYSQKCNFGEDISSFIINLGLRKEESIRLFKLISKEKYYFKKETKNNPQKSLKHKRKNLISILRKIKINLINEGYDKEKIKLQIKNIYQKYKNKPHFILEKNKYKDLSKIIEKIKENTKKFEIKNNKDNVKNNIYSILLDQLYCKTNKINLKDKIKEYLNKQKNLEYKKIFNNQYYNEITNLIEQQNNEKTTVLIKS
SIO_010081: BVAVS116_RS05200
subclass of: SO_0000673
so part of: BVAVS116_RS05200
location: 2621..3703
location: region:2621-3703:1
so has part: feature:2621-3703:1:exon

WP_012665280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2621-3703:1:exon

BVAVS116_RS05205
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05205
old locus tag: BVAVS116_E0007
so part of: sequence
location: 3706..4269
location: region:3706-4269:1
so has part: feature:3706-4269:1:exon
subclass of: SO_0000010

63641803
type: Gene
SIO_000068: ncbigene

position:3706:1
position: 3706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4269:1
position: 4269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3706-4269:1:exon

BVAVS116_RS05205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05205
old locus tag: BVAVS116_E0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012622410.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MKSVLEKLRNKKKEIIGESRKPEIFIKKEILRGRTIYHTKMLMDLYRFEINKYKKNKFLILFRELFNQKKLEGLNLFSTRENDKFLGISYGYRKPIKNIITRYKLNGTVKSYTFSKVYYIEFKFKKGSVFCYLRSLARLIKKEKINKKYFQTFIDMLNRLEKEVYEFYQKELPNGGIINKWMEKIPK
SIO_010081: BVAVS116_RS05205
subclass of: SO_0000673
so part of: BVAVS116_RS05205
location: 3706..4269
location: region:3706-4269:1
so has part: feature:3706-4269:1:exon

WP_012665281.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3706-4269:1:exon

BVAVS116_RS05210
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05210
old locus tag: BVAVS116_E0008
so part of: sequence
location: 4245..5000
location: region:4245-5000:1
so has part: feature:4245-5000:1:exon
subclass of: SO_0000010

63641804
type: Gene
SIO_000068: ncbigene

position:4245:1
position: 4245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5000:1
position: 5000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4245-5000:1:exon

BVAVS116_RS05210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05210
old locus tag: BVAVS116_E0008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014024061.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDGENTKIIAIGSIKGGVGKSTSAIIFSTLLSEKYKVLLIDADPQASTTSYFSDLLEEQGVDVSKKNIYEVLTDKKDINSSTFRLNNNLYILPSYIYLYLFYDDNIPFKETRLKDNLKLLKYKYDYIIIDTSPSLGIILTNVLVVSHYIIIPMTAQKWSVESLQLLEFALRRLKLKIPIFPMVTNFKKNNTYKHLLELISKDDNFLGIIHEREDLNKRIAENATFDLNKDYIKEYEITLKKFFQLSEKFLT
SIO_010081: BVAVS116_RS05210
subclass of: SO_0000673
so part of: BVAVS116_RS05210
location: 4245..5000
location: region:4245-5000:1
so has part: feature:4245-5000:1:exon

WP_012665282.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4245-5000:1:exon

BVAVS116_RS05215
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05215
old locus tag: BVAVS116_E0009
so part of: sequence
location: 5020..5601
location: region:5020-5601:1
so has part: feature:5020-5601:1:exon
subclass of: SO_0000010

63641805
type: Gene
SIO_000068: ncbigene

position:5020:1
position: 5020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5601:1
position: 5601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5020-5601:1:exon

BVAVS116_RS05215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05215
old locus tag: BVAVS116_E0009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890263.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MGVKFKYMNIKIKDRINTTKNQSENEISFNEDKIERFLFLKERLAINFQKEIHNKIETMKILKEIKDKEYYKLDGYQNFEMFTRNYKIAKSQAYEYLRIANAIEEGLVKEKDIIENGIQNSLFLLKDKEGMKIKKSNRNFIRPLRFQFKTENAYIYYKSKAKFTSFLLEKLLKDKEELLNEIMKEYKKYRKYK
SIO_010081: BVAVS116_RS05215
subclass of: SO_0000673
so part of: BVAVS116_RS05215
location: 5020..5601
location: region:5020-5601:1
so has part: feature:5020-5601:1:exon

WP_012665283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5020-5601:1:exon

BVAVS116_RS05220
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05220
old locus tag: BVAVS116_E0011
so part of: sequence
location: 6876..7391
location: region:6876-7391:1
so has part: feature:6876-7391:1:exon
subclass of: SO_0000010

63641806
type: Gene
SIO_000068: ncbigene

position:6876:1
position: 6876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7391:1
position: 7391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6876-7391:1:exon

BVAVS116_RS05220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05220
old locus tag: BVAVS116_E0011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012665732.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKGIKVIILSILFLLISNVFIFSNEESEEVVIINESNRSDLGLILKSNTKFGSFVLEHYHAGNIDLHFNIQIINSSEILLKKIYINGVSMMEYLTNTYFIDGINHFNFGMYLFFEGEKVNILKKLAETNGIDVYIECFDEINNEKKEYSFKVSRENSMHFYSAFDMIFHQ
SIO_010081: BVAVS116_RS05220
subclass of: SO_0000673
so part of: BVAVS116_RS05220
location: 6876..7391
location: region:6876-7391:1
so has part: feature:6876-7391:1:exon

WP_012665285.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6876-7391:1:exon

BVAVS116_RS05225
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05225
old locus tag: BVAVS116_E0012
so part of: sequence
location: 7404..8024
location: region:7404-8024:1
so has part: feature:7404-8024:1:exon
subclass of: SO_0000010

63641807
type: Gene
SIO_000068: ncbigene

position:7404:1
position: 7404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8024:1
position: 8024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7404-8024:1:exon

BVAVS116_RS05225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05225
old locus tag: BVAVS116_E0012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010259717.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRILFYGLLLICVFLGFFFFFKKENNVIYNKIIQKSEDKVFTDETYTYLFKDGNLKELVFIKSEFMDPKLEHKKNRNMTGYLIDAYRAMNPSYNFDFVIHDNKILGFKSIIFEGFEDAQVSKHENNLPSEKWQQLKDFNIGDPNINEKFFHLKFPFTVKNTLRVTLSKGFFNKIKRLKRLKVVLVSNEDKEYKIDIKNFLLKYNL
SIO_010081: BVAVS116_RS05225
subclass of: SO_0000673
so part of: BVAVS116_RS05225
location: 7404..8024
location: region:7404-8024:1
so has part: feature:7404-8024:1:exon

WP_012665286.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7404-8024:1:exon

BVAVS116_RS05230
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05230
old locus tag: BVAVS116_E0013
so part of: sequence
location: complement(8219..8434)
location: region:8219-8434:-1
so has part: feature:8219-8434:-1:exon
subclass of: SO_0000010

63641808
type: Gene
SIO_000068: ncbigene

position:8219:-1
position: 8219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8434:-1
position: 8434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8219-8434:-1:exon

BVAVS116_RS05230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05230
old locus tag: BVAVS116_E0013
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIEGCLFYKVSEAQEILKNKFDYKITKSHLRYKLEVFECYIRIGNIMMIPEDFLKYLTLSLVLFKKTKNIK
SIO_010081: BVAVS116_RS05230
subclass of: SO_0000673
so part of: BVAVS116_RS05230
location: complement(8219..8434)
location: region:8219-8434:-1
so has part: feature:8219-8434:-1:exon

WP_012665287.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8219-8434:-1:exon

BVAVS116_RS05235
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05235
old locus tag: BVAVS116_E0015
so part of: sequence
location: 8855..9808
location: region:8855-9808:1
so has part: feature:8855-9808:1:exon
subclass of: SO_0000010

63641809
type: Gene
SIO_000068: ncbigene

position:8855:1
position: 8855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9808:1
position: 9808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8855-9808:1:exon

BVAVS116_RS05235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05235
old locus tag: BVAVS116_E0015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002662157.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIKNMYHKMVFLTILIFISACNQDSQNKKDKDKVLNYSEGVDTVYLHSTAKVEVDFHSGSRFLNSIDSAHQALYKADLLRSTKFFNYGTIEDIRFKNGIASKPPSYIYYTNAPNKSTFFTIRLLISSPQGNNLGQLEIVVRAYDLAPQGFLVYRVNHHELDDRGLRRRRYYRFFDSTIENIYGAETSSIKLKNISKYLDSEMNKTVVDNSARISKFANTVLSALQMEPDSASEIMNPYFAEAVSAVVFLTLAPLLDYRIEEAVFQLVRTDHFSKTLSINSYSTMMKQWAGLSYWDYIVLHPDEDVRQPGKLAMHPQ
SIO_010081: BVAVS116_RS05235
subclass of: SO_0000673
so part of: BVAVS116_RS05235
location: 8855..9808
location: region:8855-9808:1
so has part: feature:8855-9808:1:exon

WP_012665289.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8855-9808:1:exon

BVAVS116_RS06685
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06685
old locus tag: BVAVS116_E0020
so part of: sequence
location: 11127..11306
location: region:11127-11306:1
so has part: feature:11127-11306:1:exon
subclass of: SO_0000010

63641990
type: Gene
SIO_000068: ncbigene

position:11127:1
position: 11127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11306:1
position: 11306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11127-11306:1:exon

BVAVS116_RS06685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06685
old locus tag: BVAVS116_E0020
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: pfs protein
translation: MRGISDIVNNENNYDDYKKFIRQASINSAKTAVKLIKKILKKILTIFPVLMKNLGQEAK
SIO_010081: BVAVS116_RS06685
subclass of: SO_0000673
so part of: BVAVS116_RS06685
location: 11127..11306
location: region:11127-11306:1
so has part: feature:11127-11306:1:exon

WP_012665293.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11127-11306:1:exon

BVAVS116_RS05240
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05240
pseudo: true
so part of: sequence
location: <11231..11957
location: region:11231-11957:1
so has part: feature:11231-11957:1:exon
subclass of: SO_0000010

63641810
type: Gene
SIO_000068: ncbigene

position:11231:1
position: 11231
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:11957:1
position: 11957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11231-11957:1:exon

BVAVS116_RS05240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05240
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023103.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: S2/P23 family protein
SIO_010081: BVAVS116_RS05240
subclass of: SO_0000673
so part of: BVAVS116_RS05240
location: <11231..11957
location: region:11231-11957:1
so has part: feature:11231-11957:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11231-11957:1:exon

BVAVS116_RS05250
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05250
old locus tag: BVAVS116_E0024
so part of: sequence
location: 12739..13329
location: region:12739-13329:1
so has part: feature:12739-13329:1:exon
subclass of: SO_0000010

63641811
type: Gene
SIO_000068: ncbigene

position:12739:1
position: 12739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13329:1
position: 13329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12739-13329:1:exon

BVAVS116_RS05250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05250
old locus tag: BVAVS116_E0024
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486448.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: isochorismatase family protein
translation: MLIDIQNDFLESGALPVPNSNEIIPLINQLQNYFKNILATKDWHCKNHVSFLSNENGGIWPIHCVKNTWGSKFPNSLNTKRIKKVFLKGKSRYYDSYSGFYDNYIKTKQTGLHFYLKKKSINTLFIAGLALDFCVKETIFDAINLGFQVCLILDATKSITTTPELIIQELKKLNILTCFSKDIFESQSKLNPKKMT
SIO_010081: BVAVS116_RS05250
subclass of: SO_0000673
so part of: BVAVS116_RS05250
location: 12739..13329
location: region:12739-13329:1
so has part: feature:12739-13329:1:exon

WP_244427565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12739-13329:1:exon

BVAVS116_RS05255
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05255
old locus tag: BVAVS116_E0025
so part of: sequence
location: 13459..14541
location: region:13459-14541:1
so has part: feature:13459-14541:1:exon
subclass of: SO_0000010

63641812
type: Gene
SIO_000068: ncbigene

position:13459:1
position: 13459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14541:1
position: 14541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13459-14541:1:exon

BVAVS116_RS05255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05255
old locus tag: BVAVS116_E0025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486447.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKVNKYPQTKSKYQYKLIALIATLEYVNKTKKKYCQSDILYCFNGNLKRNGQKEVSIKTLRNYFYTLEKLNITINYYRHLGINMGTEIYYTLRHSKKDCYNIINQYFREKKKERFQKRVNSYIKINYSKKDSVKNGECFNNKYNKEEKEENKKEVQINKLKLKKYSQKCNFGEDISSFIINLGLRKEESIRLFKLISKEKYYFKKETKNNPQKSLKHKRKNLISTLRKIKINLINEGYDKEKIKLQIKNIYQKYKNKPHFILEKNKYKDLSKIIEKIKENTKKFEIKNNKDNVKNNIYSILLDQLYCKTNKINLKDKIKEYLNKQKNLEYKKIFNNQYYNEITNLIEQQNNEKTTVLIKS
SIO_010081: BVAVS116_RS05255
subclass of: SO_0000673
so part of: BVAVS116_RS05255
location: 13459..14541
location: region:13459-14541:1
so has part: feature:13459-14541:1:exon

WP_012665299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13459-14541:1:exon

BVAVS116_RS05260
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05260
old locus tag: BVAVS116_E0026
so part of: sequence
location: 14544..15107
location: region:14544-15107:1
so has part: feature:14544-15107:1:exon
subclass of: SO_0000010

63641813
type: Gene
SIO_000068: ncbigene

position:14544:1
position: 14544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15107:1
position: 15107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14544-15107:1:exon

BVAVS116_RS05260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05260
old locus tag: BVAVS116_E0026
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012622410.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MKSVLEKLRNKKKEIIGESRKPEIFIKKEILRGRTIYHTKMLMDLYRFEINKYKKNKFLILFRELFNQKKLEGLNLFSTRENDKFLGISYGYRKPIKNIITRYKLNGTVKSYTFSKVYYIEFKFKKGSVFCYLRSLARLIKKEKINKKYFQTFIDMLNRLEKEVYEFYQKELPNGGIINKWMEKIPK
SIO_010081: BVAVS116_RS05260
subclass of: SO_0000673
so part of: BVAVS116_RS05260
location: 14544..15107
location: region:14544-15107:1
so has part: feature:14544-15107:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14544-15107:1:exon

BVAVS116_RS05265
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05265
old locus tag: BVAVS116_E0027
so part of: sequence
location: 15083..15838
location: region:15083-15838:1
so has part: feature:15083-15838:1:exon
subclass of: SO_0000010

63641814
type: Gene
SIO_000068: ncbigene

position:15083:1
position: 15083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15838:1
position: 15838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15083-15838:1:exon

BVAVS116_RS05265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05265
old locus tag: BVAVS116_E0027
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014024061.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDGENTKIIAIGSIKGGVGKSTSAIIFSTLLSEKYKVLLIDADPQASTTSYFSDLLEEQGVDVPKKNIYEVLTDKKDINSSTFRLNNNLYILPSYIYLYLFYDDNIPFKETRLKDNLKLLKYKYDYIIIDTSPSLGIILTNVLVVSHYIIIPMTAQKWSVESLQLLEFALRRLKLKIPIFPMVTNFKKNNTYKHLLELISKDDNFLGLIHEREDLNKRIAENDTFDLNKDYIKEYEITLKKFFQLSEKFLT
SIO_010081: BVAVS116_RS05265
subclass of: SO_0000673
so part of: BVAVS116_RS05265
location: 15083..15838
location: region:15083-15838:1
so has part: feature:15083-15838:1:exon

WP_012665300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15083-15838:1:exon

BVAVS116_RS05270
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05270
old locus tag: BVAVS116_E0028
so part of: sequence
location: 15858..16439
location: region:15858-16439:1
so has part: feature:15858-16439:1:exon
subclass of: SO_0000010

63641815
type: Gene
SIO_000068: ncbigene

position:15858:1
position: 15858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16439:1
position: 16439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15858-16439:1:exon

BVAVS116_RS05270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05270
old locus tag: BVAVS116_E0028
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890263.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MGVKFKYMNIKIKDRINTTKNQSKNEISFNEDKIERFLFLKERLAINFQKEIHNKIETMKILKEIKDKEYYKLDGYQNFEMFTRNYKIAKSQAYEYLRIANAIEEGLVKEKDIIENGIQNSLFLLKDKEGIKIKKSNRNFIRPLRFQLKTENAYIYYKSKAKFTSFLLEKLLKDKKELLNEIMKEYKKYRKYK
SIO_010081: BVAVS116_RS05270
subclass of: SO_0000673
so part of: BVAVS116_RS05270
location: 15858..16439
location: region:15858-16439:1
so has part: feature:15858-16439:1:exon

WP_012665301.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15858-16439:1:exon

BVAVS116_RS06690
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06690
so part of: sequence
location: 17712..17909
location: region:17712-17909:1
so has part: feature:17712-17909:1:exon
subclass of: SO_0000010

71696721
type: Gene
SIO_000068: ncbigene

position:17712:1
position: 17712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17909:1
position: 17909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17712-17909:1:exon

BVAVS116_RS06690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06690
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKGIKVIILSILFLLISNVFIFSNEESEEVVIINESNRSDLGLILKSNTKFGSFVLESIIMRET
SIO_010081: BVAVS116_RS06690
subclass of: SO_0000673
so part of: BVAVS116_RS06690
location: 17712..17909
location: region:17712-17909:1
so has part: feature:17712-17909:1:exon

WP_210380417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17712-17909:1:exon

BVAVS116_RS06695
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06695
old locus tag: BVAVS116_E0031
so part of: sequence
location: 17984..18229
location: region:17984-18229:1
so has part: feature:17984-18229:1:exon
subclass of: SO_0000010

71696722
type: Gene
SIO_000068: ncbigene

position:17984:1
position: 17984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18229:1
position: 18229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17984-18229:1:exon

BVAVS116_RS06695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06695
old locus tag: BVAVS116_E0031
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486451.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMEYLTNTYFIDGINHFNFGMYLFFEGEKVNILKKLAETNGIDVYIECFDEINNEKKEYSFKVSRENSMHFYSAFDMIFHQ
SIO_010081: BVAVS116_RS06695
subclass of: SO_0000673
so part of: BVAVS116_RS06695
location: 17984..18229
location: region:17984-18229:1
so has part: feature:17984-18229:1:exon

WP_012665304.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17984-18229:1:exon

BVAVS116_RS05280
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05280
old locus tag: BVAVS116_E0032
so part of: sequence
location: 18242..18862
location: region:18242-18862:1
so has part: feature:18242-18862:1:exon
subclass of: SO_0000010

63641817
type: Gene
SIO_000068: ncbigene

position:18242:1
position: 18242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18862:1
position: 18862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18242-18862:1:exon

BVAVS116_RS05280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05280
old locus tag: BVAVS116_E0032
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010259717.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRILFYGLLLICVFLGFFFFFKKENNVIYNKIIQKSEDKVFTDETYTYLFKDGNLKELVFIKSEFMDPKLEHKKNRNMTGYLIDAYRAMNPSYNFDFAVHDNKILGFKSVIFEGFGDAQVSRHENNLPSEKWQQLKDFNIGDPNINEKFFHLKFPFTVKNTLRVTLSKGFFNKIKRLKRLKIVLVSNEDKEYKIDIKNFLLKYNL
SIO_010081: BVAVS116_RS05280
subclass of: SO_0000673
so part of: BVAVS116_RS05280
location: 18242..18862
location: region:18242-18862:1
so has part: feature:18242-18862:1:exon

WP_012665305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18242-18862:1:exon

BVAVS116_RS05285
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05285
old locus tag: BVAVS116_E0033
so part of: sequence
location: complement(18989..19270)
location: region:18989-19270:-1
so has part: feature:18989-19270:-1:exon
subclass of: SO_0000010

63641818
type: Gene
SIO_000068: ncbigene

position:18989:-1
position: 18989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19270:-1
position: 19270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18989-19270:-1:exon

BVAVS116_RS05285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05285
old locus tag: BVAVS116_E0033
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486453.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIEGCLFYKVSEAQEILKNKFDYKITKSHLRYKLEVFECYIRIGNIMMIPEDFLKYLTLSLVLFKKNEKYKIEIKKEIKEKMPKFKELIKRDK
SIO_010081: BVAVS116_RS05285
subclass of: SO_0000673
so part of: BVAVS116_RS05285
location: complement(18989..19270)
location: region:18989-19270:-1
so has part: feature:18989-19270:-1:exon

WP_040351392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18989-19270:-1:exon

BVAVS116_RS05290
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05290
old locus tag: BVAVS116_E0035
so part of: sequence
location: 19688..20674
location: region:19688-20674:1
so has part: feature:19688-20674:1:exon
subclass of: SO_0000010

63641819
type: Gene
SIO_000068: ncbigene

position:19688:1
position: 19688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20674:1
position: 20674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19688-20674:1:exon

BVAVS116_RS05290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05290
old locus tag: BVAVS116_E0035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002662157.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIKNMYQKMVFLTILIFISACNQDSQNKKDKDKVLNYSEGVDTVYLHSTAKVEVDFHSGSRFLDSIDSAHQALYKADLLRSTKFFNYGTIEDIRFKNGIASKPPSYIYYTNASNKSTFFTIGLLISSPQGNNLGQLEIVVRAYDLAPQGFLVYRVNHHERDDRGLRRRRYYRFFDSTIENIYGAETSSIKLKNISKYLDSEMNRTVVDNSARISKFANTVLSALQMEPDSASEIMNPYFAEAVSAVVFLTLAPLLDYRIEEAVFQLVRTDHFSKTLSINSYSTMMKQWAGLSYWDYIVLHPDEDVRQPGKLAMHPQWPMVYMNIVKY
SIO_010081: BVAVS116_RS05290
subclass of: SO_0000673
so part of: BVAVS116_RS05290
location: 19688..20674
location: region:19688-20674:1
so has part: feature:19688-20674:1:exon

WP_012665308.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19688-20674:1:exon

BVAVS116_RS05295
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05295
old locus tag: BVAVS116_E0040
so part of: sequence
location: 21998..22294
location: region:21998-22294:1
so has part: feature:21998-22294:1:exon
subclass of: SO_0000010

63641820
type: Gene
SIO_000068: ncbigene

position:21998:1
position: 21998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22294:1
position: 22294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21998-22294:1:exon

BVAVS116_RS05295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05295
old locus tag: BVAVS116_E0040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023085.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5425 family lipoprotein
translation: MYKKCFISLLYKITAFLLILGCDLPNKTYQNKMNDISNLEKNYMNDLDYKCLNKKESTEVKDSQKLDNNNYKNRSYSSRISNFSNSSSKTRTVCKTRD
SIO_010081: BVAVS116_RS05295
subclass of: SO_0000673
so part of: BVAVS116_RS05295
location: 21998..22294
location: region:21998-22294:1
so has part: feature:21998-22294:1:exon

WP_012665313.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21998-22294:1:exon

BVAVS116_RS05300
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05300
old locus tag: BVAVS116_E0041
so part of: sequence
location: complement(22399..22764)
location: region:22399-22764:-1
so has part: feature:22399-22764:-1:exon
subclass of: SO_0000010

63641821
type: Gene
SIO_000068: ncbigene

position:22399:-1
position: 22399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22764:-1
position: 22764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22399-22764:-1:exon

BVAVS116_RS05300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05300
old locus tag: BVAVS116_E0041
inference: COORDINATES: protein motif:HMM:NF033725.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MCYLFCIFLFILARFRIIFNFKIARTQAYKYIKITQLIFEGELKEIDIIKNGIDKTLLNLIKYKKVKSRENLIKPFKIRLQTQEVFDFYKKNPKFTGYIFEDFYKKNKERLIEKLEKYKNK
SIO_010081: BVAVS116_RS05300
subclass of: SO_0000673
so part of: BVAVS116_RS05300
location: complement(22399..22764)
location: region:22399-22764:-1
so has part: feature:22399-22764:-1:exon

WP_012665314.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22399-22764:-1:exon

BVAVS116_RS06700
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06700
old locus tag: BVAVS116_E0042
so part of: sequence
location: complement(22919..23080)
location: region:22919-23080:-1
so has part: feature:22919-23080:-1:exon
subclass of: SO_0000010

71696723
type: Gene
SIO_000068: ncbigene

position:22919:-1
position: 22919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23080:-1
position: 23080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22919-23080:-1:exon

BVAVS116_RS06700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06700
old locus tag: BVAVS116_E0042
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLANLTIKDKQTNEEKAYEILVLNSKLFYNTIKLMLAKYSNLSSEKLMLPIDE
SIO_010081: BVAVS116_RS06700
subclass of: SO_0000673
so part of: BVAVS116_RS06700
location: complement(22919..23080)
location: region:22919-23080:-1
so has part: feature:22919-23080:-1:exon

WP_012665315.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22919-23080:-1:exon

BVAVS116_RS06705
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06705
old locus tag: BVAVS116_E0043
so part of: sequence
location: complement(23194..23334)
location: region:23194-23334:-1
so has part: feature:23194-23334:-1:exon
subclass of: SO_0000010

71696724
type: Gene
SIO_000068: ncbigene

position:23194:-1
position: 23194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23334:-1
position: 23334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23194-23334:-1:exon

BVAVS116_RS06705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06705
old locus tag: BVAVS116_E0043
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPISKIIAFEPTKEFEEKYEVKSPKLIFEGLNIDFEQHRLALLKLV
SIO_010081: BVAVS116_RS06705
subclass of: SO_0000673
so part of: BVAVS116_RS06705
location: complement(23194..23334)
location: region:23194-23334:-1
so has part: feature:23194-23334:-1:exon

WP_234926485.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23194-23334:-1:exon

BVAVS116_RS05310
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05310
old locus tag: BVAVS116_E0046
so part of: sequence
location: 24402..25472
location: region:24402-25472:1
so has part: feature:24402-25472:1:exon
subclass of: SO_0000010

63641822
type: Gene
SIO_000068: ncbigene

position:24402:1
position: 24402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25472:1
position: 25472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24402-25472:1:exon

BVAVS116_RS05310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05310
old locus tag: BVAVS116_E0046
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890363.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKGNTFILILVTTMFVSCKFYRNGDANKQNASLSDATGDIGNIGLGILQDENKKGNITSKVALAKVIGHASSSELKFNDDPNSSFSEYYQEKTTGKLTEEDVDKLKVFFDKTITYQGVLDSIYNQNIRYYNTIATYSGCADYSIGCFSKAPSEKRSQALAYLENNNLDKTYSSLNKMLKEAAHDYCPNALDNAIKEYKEVIIKAKGAENNIKKINDFTGDEGNNKEEGKKNVDNLKKVRDILSVFKKTIESASVAYADAFAIIVSSLSSAEFIEAVNEFKEAAKKYTNGNRGDHAVDVVVGAIAGMAFDTYYENGFKRAKMFANKATGTEVDKIIAAIEKLSVIYKTVKPKNKDK
SIO_010081: BVAVS116_RS05310
subclass of: SO_0000673
so part of: BVAVS116_RS05310
location: 24402..25472
location: region:24402-25472:1
so has part: feature:24402-25472:1:exon

WP_012665319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24402-25472:1:exon

BVAVS116_RS05315
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05315
old locus tag: BVAVS116_E0047
pseudo: true
so part of: sequence
location: complement(<25699..26103)
location: region:25699-26103:-1
so has part: feature:25699-26103:-1:exon
subclass of: SO_0000010

63641823
type: Gene
SIO_000068: ncbigene

position:25699:-1
position: 25699
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:26103:-1
position: 26103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25699-26103:-1:exon

BVAVS116_RS05315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05315
old locus tag: BVAVS116_E0047
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023256.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: class I SAM-dependent DNA methyltransferase
SIO_010081: BVAVS116_RS05315
subclass of: SO_0000673
so part of: BVAVS116_RS05315
location: complement(<25699..26103)
location: region:25699-26103:-1
so has part: feature:25699-26103:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25699-26103:-1:exon

BVAVS116_RS05320
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05320
old locus tag: BVAVS116_E0049
so part of: sequence
location: complement(26498..26662)
location: region:26498-26662:-1
so has part: feature:26498-26662:-1:exon
subclass of: SO_0000010

63641824
type: Gene
SIO_000068: ncbigene

position:26498:-1
position: 26498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26662:-1
position: 26662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26498-26662:-1:exon

BVAVS116_RS05320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05320
old locus tag: BVAVS116_E0049
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010256458.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAQVAYNFKIPFIIIIREISDIVNNENNYDDYKKFIRKASINSSKTAVNLIKLM
SIO_010081: BVAVS116_RS05320
subclass of: SO_0000673
so part of: BVAVS116_RS05320
location: complement(26498..26662)
location: region:26498-26662:-1
so has part: feature:26498-26662:-1:exon

WP_244427564.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26498-26662:-1:exon

BVAVS116_RS06480
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06480
old locus tag: BVAVS116_E0050
so part of: sequence
location: complement(26802..27026)
location: region:26802-27026:-1
so has part: feature:26802-27026:-1:exon
subclass of: SO_0000010

63641999
type: Gene
SIO_000068: ncbigene

position:26802:-1
position: 26802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27026:-1
position: 27026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26802-27026:-1:exon

BVAVS116_RS06480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06480
old locus tag: BVAVS116_E0050
inference: COORDINATES: protein motif:HMM:NF033721.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P12 family lipoprotein
translation: MLYLLSEKYFFEIDPKTLKDTITERLKNERRNWSRRIYNNLARQAKNEMENALRQLNVSSSNRVKAVKIKKEIE
SIO_010081: BVAVS116_RS06480
subclass of: SO_0000673
so part of: BVAVS116_RS06480
location: complement(26802..27026)
location: region:26802-27026:-1
so has part: feature:26802-27026:-1:exon

WP_012665323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26802-27026:-1:exon

BVAVS116_RS06710
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06710
old locus tag: BVAVS116_E0051
pseudo: true
so part of: sequence
location: <27008..27187
location: region:27008-27187:1
so has part: feature:27008-27187:1:exon
subclass of: SO_0000010

71696725
type: Gene
SIO_000068: ncbigene

position:27008:1
position: 27008
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:27187:1
position: 27187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27008-27187:1:exon

BVAVS116_RS06710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06710
old locus tag: BVAVS116_E0051
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002658086.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: 5'-nucleosidase
SIO_010081: BVAVS116_RS06710
subclass of: SO_0000673
so part of: BVAVS116_RS06710
location: <27008..27187
location: region:27008-27187:1
so has part: feature:27008-27187:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:27008-27187:1:exon

BVAVS116_RS05330
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05330
old locus tag: BVAVS116_E0052
so part of: sequence
location: complement(27356..28372)
location: region:27356-28372:-1
so has part: feature:27356-28372:-1:exon
subclass of: SO_0000010

63641825
type: Gene
SIO_000068: ncbigene

position:27356:-1
position: 27356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28372:-1
position: 28372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27356-28372:-1:exon

BVAVS116_RS05330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05330
old locus tag: BVAVS116_E0052
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540863.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMRRNNMYILLLTTILFVSCKFFGNSGASKEGASLLDVANKISHSRIATSSGKQEENTSDTTGKAKKNKSIPEMLADAPAVTSKDKLTEEDNKKLMDFFSKTKKYQSGLDSIYNKYTRSYGTINTYGSCGDYSIGCFSTGPSEIRKKALDELKKNKLEEEYSKLSKILKSAVSSYKDATLEDAIEKYRKAIEQASEAENKIETVKDYTDAKSATAEKKKKNVDHLKIARSVLPIIKKTIEIACLSYADAFVAVTSSLSCNEFKQAINEFNVAAKQYANGDKGDNAVDVIVGTISGMTSGFEDAGFKRAKMFASNKKGSEVENMIKAIDKLSAIYKKVK
SIO_010081: BVAVS116_RS05330
subclass of: SO_0000673
so part of: BVAVS116_RS05330
location: complement(27356..28372)
location: region:27356-28372:-1
so has part: feature:27356-28372:-1:exon

WP_012665325.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27356-28372:-1:exon

BVAVS116_RS06160
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06160
old locus tag: BVAVS116_E0054
so part of: sequence
location: 28636..28839
location: region:28636-28839:1
so has part: feature:28636-28839:1:exon
subclass of: SO_0000010

63641968
type: Gene
SIO_000068: ncbigene

position:28636:1
position: 28636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28839:1
position: 28839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28636-28839:1:exon

BVAVS116_RS06160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06160
old locus tag: BVAVS116_E0054
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFNKMLMDFFSKTKKYQSSLDSIYNKYTRSYGTINTYGSCGDYSIGCFSTGPSENRKKALDELKKIN
SIO_010081: BVAVS116_RS06160
subclass of: SO_0000673
so part of: BVAVS116_RS06160
location: 28636..28839
location: region:28636-28839:1
so has part: feature:28636-28839:1:exon

WP_012665327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28636-28839:1:exon

BVAVS116_RS06825
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06825
old locus tag: BVAVS116_E0055
so part of: sequence
location: 28939..29067
location: region:28939-29067:1
so has part: feature:28939-29067:1:exon
subclass of: SO_0000010

80265106
type: Gene
SIO_000068: ncbigene

position:28939:1
position: 28939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29067:1
position: 29067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28939-29067:1:exon

BVAVS116_RS06825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06825
old locus tag: BVAVS116_E0055
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAHKLGSVLKKSVSMKIILISNNTSSSCNELANKVTVYFKKN
SIO_010081: BVAVS116_RS06825
subclass of: SO_0000673
so part of: BVAVS116_RS06825
location: 28939..29067
location: region:28939-29067:1
so has part: feature:28939-29067:1:exon

WP_012665328.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28939-29067:1:exon

BVAVS116_RS06165
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06165
old locus tag: BVAVS116_E0059
so part of: sequence
location: 30396..30719
location: region:30396-30719:1
so has part: feature:30396-30719:1:exon
subclass of: SO_0000010

63641969
type: Gene
SIO_000068: ncbigene

position:30396:1
position: 30396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30719:1
position: 30719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30396-30719:1:exon

BVAVS116_RS06165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06165
old locus tag: BVAVS116_E0059
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MITIKTTNNIIGVKIMRSKNIFINSKIKPSLLTLSSDDEYFLPLVNKLYIENSIPLINSGYLNDFSVMVHFIFQISHLATTVLKIGVIKKSSSSKLESKIILVNKNY
SIO_010081: BVAVS116_RS06165
subclass of: SO_0000673
so part of: BVAVS116_RS06165
location: 30396..30719
location: region:30396-30719:1
so has part: feature:30396-30719:1:exon

WP_051008161.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30396-30719:1:exon

BVAVS116_RS06715
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06715
old locus tag: BVAVS116_E0060
so part of: sequence
location: 31073..31576
location: region:31073-31576:1
so has part: feature:31073-31576:1:exon
subclass of: SO_0000010

71696726
type: Gene
SIO_000068: ncbigene

position:31073:1
position: 31073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31576:1
position: 31576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31073-31576:1:exon

BVAVS116_RS06715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06715
old locus tag: BVAVS116_E0060
inference: COORDINATES: protein motif:HMM:NF019310.2
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MEFPSGIISDIFDRKIVYLVSIFLLMISYFIVFKASSFVLLCVSWFIYGMSAAINTGTIDISFTKLYQNSSKKLKAFISFVKMLLSISAILVGYIGNVLYLYINIRLYLISLLIYLISSLITIFFIPNDKNIDHKLNKEDLISYLIKFKKKIITLLKSKELLELFRF
SIO_010081: BVAVS116_RS06715
subclass of: SO_0000673
so part of: BVAVS116_RS06715
location: 31073..31576
location: region:31073-31576:1
so has part: feature:31073-31576:1:exon

WP_012665333.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31073-31576:1:exon