Borreliella valaisiana VS116 plasmid VS116_cp32-10, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii
Submitted (12-FEB-2009) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA
Submitted (06-JAN-2009) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA
Submitted (12-JUN-2007) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001435.1.\nThe chromosome for this strain has been deposited under the Whole\nGenome Shotgun project accession ABCY00000000. The DNA or cells for\nthis strains can be obtained from Sherwood Casjens (Univ. of Utah,\nsherwood.casjens@path.utah.edu) or Benjamin J. Luft (SUNY at Stony\nBrook, bluft@notes.cc.sunysb.edu).\nThe DNA or cells for this strains can be obtained from Sherwood\nCasjens (Univ. of Utah, sherwood.casjens@path.utah.edu) or Benjamin\nJ. Luft (SUNY at Stony Brook, bluft@notes.cc.sunysb.edu)\nThis WGS record is a draft assembly, and may contain collapsed\nrepeats, missassemblies and/or low quality consensus bases. The\nplasmids were deposited in GenBank Accession Numbers\nCP001432-CP001442.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 01:26:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,249\nCDSs (total) :: 1,209\nGenes (coding) :: 1,142\nCDSs (with protein) :: 1,142\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 67\nCDSs (without protein) :: 67\nPseudo Genes (ambiguous residues) :: 0 of 67\nPseudo Genes (frameshifted) :: 49 of 67\nPseudo Genes (incomplete) :: 16 of 67\nPseudo Genes (internal stop) :: 41 of 67\nPseudo Genes (multiple problems) :: 33 of 67\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002658538.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014540092.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540879.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658543.1
COORDINATES: similar to AA sequence:RefSeq:WP_012593056.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883814.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540034.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658553.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017447.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658435.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540018.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658559.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658561.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658563.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658565.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883796.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658570.1
COORDINATES: similar to AA sequence:RefSeq:WP_010261318.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540064.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883841.1
DUF276 is restricted to Borreliella and related spirochetes; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014486178.1
COORDINATES: similar to AA sequence:RefSeq:WP_010256749.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658481.1
GO:0140911 - pore-forming activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010257832.1
BlyB family putative holin accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_014486154.1
COORDINATES: similar to AA sequence:RefSeq:WP_010259076.1
COORDINATES: similar to AA sequence:RefSeq:WP_012592982.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703873.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017692.1
COORDINATES: similar to AA sequence:RefSeq:WP_010256384.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658762.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_010256792.1
COORDINATES: similar to AA sequence:RefSeq:WP_012621480.1
COORDINATES: similar to AA sequence:RefSeq:WP_012592996.1
COORDINATES: similar to AA sequence:RefSeq:WP_014486141.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002658535.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599357.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017644.1
PBSX family phage terminase large subunit