Borreliella valaisiana VS116 plasmid VS116_cp32-2-7, complete sequence.
type: Entry
definition: Borreliella valaisiana VS116 plasmid VS116_cp32-2-7, complete sequence.
sequence version: NC_012131.1
sequence date: 2023-04-24
sequence: sequence
division: CON
label: NC_012131.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02436326
keyword: RefSeq
source: Borreliella valaisiana VS116
organism: Borreliella valaisiana VS116
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
references: 22207749
reference: 2
reference: 3
reference: 4
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001434.1.\nThe chromosome for this strain has been deposited under the Whole\nGenome Shotgun project accession ABCY00000000. The DNA or cells for\nthis strains can be obtained from Sherwood Casjens (Univ. of Utah,\nsherwood.casjens@path.utah.edu) or Benjamin J. Luft (SUNY at Stony\nBrook, bluft@notes.cc.sunysb.edu).\nThe DNA or cells for this strains can be obtained from Sherwood\nCasjens (Univ. of Utah, sherwood.casjens@path.utah.edu) or Benjamin\nJ. Luft (SUNY at Stony Brook, bluft@notes.cc.sunysb.edu)\nThis WGS record is a draft assembly, and may contain collapsed\nrepeats, missassemblies and/or low quality consensus bases. The\nplasmids were deposited in GenBank Accession Numbers\nCP001432-CP001442.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 01:26:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,249\nCDSs (total) :: 1,209\nGenes (coding) :: 1,142\nCDSs (with protein) :: 1,142\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 67\nCDSs (without protein) :: 67\nPseudo Genes (ambiguous residues) :: 0 of 67\nPseudo Genes (frameshifted) :: 49 of 67\nPseudo Genes (incomplete) :: 16 of 67\nPseudo Genes (internal stop) :: 41 of 67\nPseudo Genes (multiple problems) :: 33 of 67\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 27367
topology: circular
so has quality: SO_0000988
location: 1..27367
location: region:1-27367:1
RO_0002162: 445987

NC_012131
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02436326
type: BioSample
SIO_000068: biosample

1
title: Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii
author: Schutzer, S.E.
author: Fraser-Liggett, C.M.
author: Qiu, W.G.
author: Kraiczy, P.
author: Mongodin, E.F.
author: Dunn, J.J.
author: Luft, B.J.
author: Casjens, S.R.
journal: J Bacteriol
volume: 194
issue: 2
pages: 545-546
year: 2012
pubmed: 22207749

22207749
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, B.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
author: Sebastian, Y.
journal: Submitted (12-FEB-2009) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

3
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, B.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
author: Sebastian, Y.
journal: Submitted (06-JAN-2009) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

4
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, S.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
journal: Submitted (12-JUN-2007) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27367:1
position: 27367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-27367:1:source
so part of: sequence
organism: Borreliella valaisiana VS116
mol type: genomic DNA
strain: VS116
type material: type strain of Borreliella valaisiana
plasmid: VS116_cp32-2-7

445987
type: Taxonomy
SIO_000068: taxonomy

BVAVS116_RS04750
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04750
old locus tag: BVAVS116_O0001
pseudo: true
so part of: sequence
location: 6..>334
location: region:6-334:1
so has part: feature:6-334:1:exon
subclass of: SO_0000010

63641718
type: Gene
SIO_000068: ncbigene

position:6:1
position: 6
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:334:1
position: 334
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6-334:1:exon

BVAVS116_RS04750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04750
old locus tag: BVAVS116_O0001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012621337.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF1073 domain-containing protein
SIO_010081: BVAVS116_RS04750
subclass of: SO_0000673
so part of: BVAVS116_RS04750
location: 6..>334
location: region:6-334:1
so has part: feature:6-334:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6-334:1:exon

BVAVS116_RS06460
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06460
old locus tag: BVAVS116_O0002
pseudo: true
so part of: sequence
location: 413..>583
location: region:413-583:1
so has part: feature:413-583:1:exon
subclass of: SO_0000010

63641996
type: Gene
SIO_000068: ncbigene

position:413:1
position: 413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:583:1
position: 583
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:413-583:1:exon

BVAVS116_RS06460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06460
old locus tag: BVAVS116_O0002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540092.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF1357 family protein
SIO_010081: BVAVS116_RS06460
subclass of: SO_0000673
so part of: BVAVS116_RS06460
location: 413..>583
location: region:413-583:1
so has part: feature:413-583:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:413-583:1:exon

BVAVS116_RS04755
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04755
old locus tag: BVAVS116_O0003
so part of: sequence
location: complement(707..3904)
location: region:707-3904:-1
so has part: feature:707-3904:-1:exon
subclass of: SO_0000010

63641719
type: Gene
SIO_000068: ncbigene

position:707:-1
position: 707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3904:-1
position: 3904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:707-3904:-1:exon

BVAVS116_RS04755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04755
old locus tag: BVAVS116_O0003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010883927.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type ISP restriction/modification enzyme
translation: MNNNESLFKKAKEYIANLRSTKLEEKTEHSNRTHLENLLNDFNKINQNSSIAIQHEPRRSKEGFGSPDYVVINNINNGIIGCVEVKKVEQNLNETLKSSQIGKYKNITRNILLTNYIEFIWIKDREVKLREVLLTKEELNSKNIKLDRNKLTKVINILDEFFNSHFEKIKSVKILATLLASKTRSLKEEIESNLKVNEEKLDLNIDEEKLGELNTLVSTCRILKESVYSNDFSISEFSDSIAQTITYGLFIARLNNKSNTEIDFSNIESFIPTNFSLIQNIIKLIKDIHKDSEFDCLKWILESIISIVNNIDTELIFNEFSFTSNKENSKDPYLYFYEDFLAKYDANLRKAKGVYYTPSSIVNFIVSSLNEILKGEFNLDKGFANKDKVTVLDFATGTGTFLLEVIRTIILKEIPKESGRQKDYINLHILKNLYGFEYLMAPYAVAHLKLSQYLKEICEVDFSSKDSRLKVYLTNTIDFKKQVDQKYLPLAFLKDITKETKEANKIKESKILVILGNPPYNAGSKNNNKYILDLIKKYKEIKNEPLNEKTISSLNDDYVKFIRFAENNIEDSNEGLIGIITNNGYLDNVTFRGMRFHLLNTFDEIYILNLHGDSRKKEKTDDGSSDQNVFDIQTGVAISIFIKHKNESKKNKLANVYYSSIKGKRKEKYEFLDNNNIFTTNFKKLEYKEPNYFFVKKDLNVENIYSEGISLKNIFIEFSIGASTAKDNIAIDYTKKELLDKLKNLVNLSEQDARNKYGIEKDTENWNLTKVQEFLKSTNIDPSYVKQITYKPFDNRFIYYSKSKGIVARPIYKTMKHILEVKDNIGIITTRLLSTSSFCHALIASVIVNRDCICSKSYFFPLYIKEDRGAFESIKKKNFNTTFKDFIKNKYSKEFTPEEILGYIYSILYSNIYRTRFIEFLKIDFPKIIFVDNVDTFLKLSKLGTKLINSHLLKDNLKLNNSIGNHTGDYNRIVEKITYKEDTKELYYNSTCCFTNVAKEVYEYEIGSYQVLKSYLKYRKGKELIINENEDEIEHLEKVIKVLSYTINVQKEIDEIIQNLKEFNE
SIO_010081: BVAVS116_RS04755
subclass of: SO_0000673
so part of: BVAVS116_RS04755
location: complement(707..3904)
location: region:707-3904:-1
so has part: feature:707-3904:-1:exon

WP_012664782.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:707-3904:-1:exon

BVAVS116_RS04760
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04760
so part of: sequence
location: complement(3975..4268)
location: region:3975-4268:-1
so has part: feature:3975-4268:-1:exon
subclass of: SO_0000010

63641720
type: Gene
SIO_000068: ncbigene

position:3975:-1
position: 3975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4268:-1
position: 4268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3975-4268:-1:exon

BVAVS116_RS04760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04760
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNLRQHAFNVFKQLKRQTTNDSSDINSKYLRILLKALLVCLMKKIVLLDNKKNNKEFTIDSSNSNNIKTKNSKKFEKLNFDMKAIYRNLESFIFVIY
SIO_010081: BVAVS116_RS04760
subclass of: SO_0000673
so part of: BVAVS116_RS04760
location: complement(3975..4268)
location: region:3975-4268:-1
so has part: feature:3975-4268:-1:exon

WP_148271168.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3975-4268:-1:exon

BVAVS116_RS04765
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04765
old locus tag: BVAVS116_O0005
pseudo: true
so part of: sequence
location: complement(<4258..4581)
location: region:4258-4581:-1
so has part: feature:4258-4581:-1:exon
subclass of: SO_0000010

63641721
type: Gene
SIO_000068: ncbigene

position:4258:-1
position: 4258
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:4581:-1
position: 4581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4258-4581:-1:exon

BVAVS116_RS04765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04765
old locus tag: BVAVS116_O0005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486169.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF603 domain-containing protein
SIO_010081: BVAVS116_RS04765
subclass of: SO_0000673
so part of: BVAVS116_RS04765
location: complement(<4258..4581)
location: region:4258-4581:-1
so has part: feature:4258-4581:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4258-4581:-1:exon

BVAVS116_RS06625
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06625
so part of: sequence
location: 4976..5143
location: region:4976-5143:1
so has part: feature:4976-5143:1:exon
subclass of: SO_0000010

71696709
type: Gene
SIO_000068: ncbigene

position:4976:1
position: 4976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5143:1
position: 5143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4976-5143:1:exon

BVAVS116_RS06625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06625
inference: COORDINATES: protein motif:HMM:NF017007.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGKTRTGIAFLCITLFYLLLTIFTIGIGSIITIPVLAMLEIIVFIDLIRIIIKKF
SIO_010081: BVAVS116_RS06625
subclass of: SO_0000673
so part of: BVAVS116_RS06625
location: 4976..5143
location: region:4976-5143:1
so has part: feature:4976-5143:1:exon

WP_244427561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4976-5143:1:exon

BVAVS116_RS04775
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
gene: eppA
locus tag: BVAVS116_RS04775
pseudo: true
so part of: sequence
location: complement(5260..5717)
location: region:5260-5717:-1
so has part: feature:5260-5717:-1:exon
subclass of: SO_0000010

63641723
type: Gene
SIO_000068: ncbigene

position:5260:-1
position: 5260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5717:-1
position: 5717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5260-5717:-1:exon

BVAVS116_RS04775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
gene: eppA
locus tag: BVAVS116_RS04775
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017640.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: exported protein A EppA
SIO_010081: BVAVS116_RS04775
subclass of: SO_0000673
so part of: BVAVS116_RS04775
location: complement(5260..5717)
location: region:5260-5717:-1
so has part: feature:5260-5717:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5260-5717:-1:exon

BVAVS116_RS04780
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04780
pseudo: true
so part of: sequence
location: complement(5829..6409)
location: region:5829-6409:-1
so has part: feature:5829-6409:-1:exon
subclass of: SO_0000010

63641724
type: Gene
SIO_000068: ncbigene

position:5829:-1
position: 5829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6409:-1
position: 6409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5829-6409:-1:exon

BVAVS116_RS04780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011600687.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: outer surface protein ErpG
SIO_010081: BVAVS116_RS04780
subclass of: SO_0000673
so part of: BVAVS116_RS04780
location: complement(5829..6409)
location: region:5829-6409:-1
so has part: feature:5829-6409:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5829-6409:-1:exon

BVAVS116_RS04785
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04785
old locus tag: BVAVS116_O0010
so part of: sequence
location: 6582..7472
location: region:6582-7472:1
so has part: feature:6582-7472:1:exon
subclass of: SO_0000010

63641725
type: Gene
SIO_000068: ncbigene

position:6582:1
position: 6582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7472:1
position: 7472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6582-7472:1:exon

BVAVS116_RS04785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04785
old locus tag: BVAVS116_O0010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486141.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MDLNKYLNLNNGDTDFLLKLLKDYQKVVDENKILKNALKNSPKNKKENLKPNPKFCLTSKTSKLITKCIKHLKQTDPISGWFVHLLSISGCRGTEIQKAKMEDITQLSSKTGEIYYNIKVNVSKKRSIACIREIVISSKEYNAIQTAHKNHFEEKNIDTRRTYLFQKTKHKFKDNQISIINISRKFKNLLKKSGFKANKSLHLCRILFILNLKTNGYNSFQIKELMKYSSTHEIDNIYELSSANKIQAYKCIKNSLNYSTNYLNLKIRFKVTLNSFPRGFKSSESYNISCSFVAIK
SIO_010081: BVAVS116_RS04785
subclass of: SO_0000673
so part of: BVAVS116_RS04785
location: 6582..7472
location: region:6582-7472:1
so has part: feature:6582-7472:1:exon

WP_012664789.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6582-7472:1:exon

BVAVS116_RS06240
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06240
pseudo: true
so part of: sequence
location: complement(7364..7736)
location: region:7364-7736:-1
so has part: feature:7364-7736:-1:exon
subclass of: SO_0000010

63641977
type: Gene
SIO_000068: ncbigene

position:7364:-1
position: 7364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7736:-1
position: 7736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7364-7736:-1:exon

BVAVS116_RS06240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06240
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010883923.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF261 family protein
SIO_010081: BVAVS116_RS06240
subclass of: SO_0000673
so part of: BVAVS116_RS06240
location: complement(7364..7736)
location: region:7364-7736:-1
so has part: feature:7364-7736:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7364-7736:-1:exon

BVAVS116_RS04790
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04790
pseudo: true
so part of: sequence
location: complement(7793..9095)
location: region:7793-9095:-1
so has part: feature:7793-9095:-1:exon
subclass of: SO_0000010

63641726
type: Gene
SIO_000068: ncbigene

position:7793:-1
position: 7793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9095:-1
position: 9095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7793-9095:-1:exon

BVAVS116_RS04790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017696.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF244 domain-containing protein
SIO_010081: BVAVS116_RS04790
subclass of: SO_0000673
so part of: BVAVS116_RS04790
location: complement(7793..9095)
location: region:7793-9095:-1
so has part: feature:7793-9095:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7793-9095:-1:exon

BVAVS116_RS04795
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
gene: bdr
locus tag: BVAVS116_RS04795
old locus tag: BVAVS116_O0016
so part of: sequence
location: complement(9364..9816)
location: region:9364-9816:-1
so has part: feature:9364-9816:-1:exon
subclass of: SO_0000010

63641727
type: Gene
SIO_000068: ncbigene

position:9364:-1
position: 9364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9816:-1
position: 9816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9364-9816:-1:exon

BVAVS116_RS04795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
gene: bdr
locus tag: BVAVS116_RS04795
old locus tag: BVAVS116_O0016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010258486.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MNNLAYRTYNIESIKNEFLNMGFSEEAIDFVFLHNDNYNFEVIKEKMNSLEQQIINVEKNFQKDISGLDTKIDSVKNELNTKIDSIKNELNAKIDSVNAKIDGVEKTLQKDISSLKNELNASNRTIQVMLIAGITLAPIIYSIFNKYFFN
SIO_010081: BVAVS116_RS04795
subclass of: SO_0000673
so part of: BVAVS116_RS04795
location: complement(9364..9816)
location: region:9364-9816:-1
so has part: feature:9364-9816:-1:exon

WP_012664795.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9364-9816:-1:exon

BVAVS116_RS04800
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04800
old locus tag: BVAVS116_O0017
so part of: sequence
location: complement(9829..10350)
location: region:9829-10350:-1
so has part: feature:9829-10350:-1:exon
subclass of: SO_0000010

63641728
type: Gene
SIO_000068: ncbigene

position:9829:-1
position: 9829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10350:-1
position: 10350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9829-10350:-1:exon

BVAVS116_RS04800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04800
old locus tag: BVAVS116_O0017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257945.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MDIVVNKKNLEVLNESEERYKNLKQRLKSSFQQEIYYKMEVIKILKEIKDNEYYKLDGYRTFEDFIKDYHLARSQAYDYLKIANAIQEGILEEVYVIENGVSKAIAVLRESPSGLKKSKQNSIKPLRFQLKTKESYDFYKSNVKFTGFMMHEIFENQKDLINKLLKKYKQLKG
SIO_010081: BVAVS116_RS04800
subclass of: SO_0000673
so part of: BVAVS116_RS04800
location: complement(9829..10350)
location: region:9829-10350:-1
so has part: feature:9829-10350:-1:exon

WP_012664796.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9829-10350:-1:exon

BVAVS116_RS04805
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04805
old locus tag: BVAVS116_O0018
so part of: sequence
location: complement(10390..11139)
location: region:10390-11139:-1
so has part: feature:10390-11139:-1:exon
subclass of: SO_0000010

63641729
type: Gene
SIO_000068: ncbigene

position:10390:-1
position: 10390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11139:-1
position: 11139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10390-11139:-1:exon

BVAVS116_RS04805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04805
old locus tag: BVAVS116_O0018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010883829.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDNKKLEIITIASIKGGVGKSTSAIIFATLLANDCKVLLIDMDTQASVTSYFYKKIMESKFDLLEKNIYEVLKGNILIDNSIVNINNNLGLIPSYLSLHKFNKEAITFKEIKLQKQLLNLKFNYDYIIIDTNPSLDYTLTNALVCSDYVIVPITAEKWAVESLELLKFSISDLAIDIPIFLIITRFKKNNTHKILFNSLKDNKNFLGLVSEREDLNKKIAKDDLFNLDKDYMLEYKNILSRFKIITMSR
SIO_010081: BVAVS116_RS04805
subclass of: SO_0000673
so part of: BVAVS116_RS04805
location: complement(10390..11139)
location: region:10390-11139:-1
so has part: feature:10390-11139:-1:exon

WP_012664797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10390-11139:-1:exon

BVAVS116_RS04810
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04810
old locus tag: BVAVS116_O0019
pseudo: true
so part of: sequence
location: complement(11115..11660)
location: region:11115-11660:-1
so has part: feature:11115-11660:-1:exon
subclass of: SO_0000010

63641730
type: Gene
SIO_000068: ncbigene

position:11115:-1
position: 11115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11660:-1
position: 11660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11115-11660:-1:exon

BVAVS116_RS04810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04810
old locus tag: BVAVS116_O0019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010258842.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
SIO_010081: BVAVS116_RS04810
subclass of: SO_0000673
so part of: BVAVS116_RS04810
location: complement(11115..11660)
location: region:11115-11660:-1
so has part: feature:11115-11660:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11115-11660:-1:exon

BVAVS116_RS04815
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04815
old locus tag: BVAVS116_O0021
so part of: sequence
location: complement(11670..12773)
location: region:11670-12773:-1
so has part: feature:11670-12773:-1:exon
subclass of: SO_0000010

63641731
type: Gene
SIO_000068: ncbigene

position:11670:-1
position: 11670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12773:-1
position: 12773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11670-12773:-1:exon

BVAVS116_RS04815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04815
old locus tag: BVAVS116_O0021
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012579169.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MSISTNKKSPNCKNKHQRKLIVLISTLKYINSKYQKYTQSNILYYFNKNLKRNGQNPIKLKTLQKYLYKLEKELKVTSNYHKHLGVNCGTEIYYKLNFSKKECYQKINQYFKEKKHSRFKKRVDNHYLGKFPLRGSVNLEECLSNKNNNIEEEERNKQIEKFQIINYYNKCRFLSKKSLSLLNLNLNQDTMIEIFKTIKKIEISLIKNKNNDLNQPLFENKQNKLKEILINIQKELKKKGYNYEQLKKNFQKIYENYKLKPHFIIENQKYRDLHNIKRKLEKIIEIKKENSQKNYEHIKINIFNILIERLKNTTEIEVLKPILKDYLNVKKKLEYNKVFDKYYYELLEIIENEKTSLKLKEFSKKVV
SIO_010081: BVAVS116_RS04815
subclass of: SO_0000673
so part of: BVAVS116_RS04815
location: complement(11670..12773)
location: region:11670-12773:-1
so has part: feature:11670-12773:-1:exon

WP_012664800.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11670-12773:-1:exon

BVAVS116_RS04820
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04820
pseudo: true
so part of: sequence
location: 13207..14106
location: region:13207-14106:1
so has part: feature:13207-14106:1:exon
subclass of: SO_0000010

63641732
type: Gene
SIO_000068: ncbigene

position:13207:1
position: 13207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14106:1
position: 14106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13207-14106:1:exon

BVAVS116_RS04820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017715.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ERF family protein
SIO_010081: BVAVS116_RS04820
subclass of: SO_0000673
so part of: BVAVS116_RS04820
location: 13207..14106
location: region:13207-14106:1
so has part: feature:13207-14106:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13207-14106:1:exon

BVAVS116_RS04825
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04825
old locus tag: BVAVS116_O0025
pseudo: true
so part of: sequence
location: complement(14148..14566)
location: region:14148-14566:-1
so has part: feature:14148-14566:-1:exon
subclass of: SO_0000010

63641733
type: Gene
SIO_000068: ncbigene

position:14148:-1
position: 14148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14566:-1
position: 14566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14148-14566:-1:exon

BVAVS116_RS04825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04825
old locus tag: BVAVS116_O0025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540110.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Mlp family lipoprotein
SIO_010081: BVAVS116_RS04825
subclass of: SO_0000673
so part of: BVAVS116_RS04825
location: complement(14148..14566)
location: region:14148-14566:-1
so has part: feature:14148-14566:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14148-14566:-1:exon

BVAVS116_RS04830
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
gene: revA
locus tag: BVAVS116_RS04830
old locus tag: BVAVS116_O0026
pseudo: true
so part of: sequence
location: 14799..15225
location: region:14799-15225:1
so has part: feature:14799-15225:1:exon
subclass of: SO_0000010

63641734
type: Gene
SIO_000068: ncbigene

position:14799:1
position: 14799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15225:1
position: 15225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14799-15225:1:exon

BVAVS116_RS04830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
gene: revA
locus tag: BVAVS116_RS04830
old locus tag: BVAVS116_O0026
inference: COORDINATES: protein motif:HMM:NF015911.2
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: fibronectin-binding protein RevA
SIO_010081: BVAVS116_RS04830
subclass of: SO_0000673
so part of: BVAVS116_RS04830
location: 14799..15225
location: region:14799-15225:1
so has part: feature:14799-15225:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14799-15225:1:exon

BVAVS116_RS06630
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
gene: bdr
locus tag: BVAVS116_RS06630
so part of: sequence
location: 15507..15890
location: region:15507-15890:1
so has part: feature:15507-15890:1:exon
subclass of: SO_0000010

71696710
type: Gene
SIO_000068: ncbigene

position:15507:1
position: 15507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15890:1
position: 15890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15507-15890:1:exon

BVAVS116_RS06630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
gene: bdr
locus tag: BVAVS116_RS06630
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703858.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MVQDLSKRYYHNELTYRDLENLEKQFGINFDNLVSKIDSVKNELTTKIDNVEKSLNTKIDSLEQNLDKKISNLAQELKKDMQINNQLLSEKLKVSNRIITIAAIVVVLIAISIITTVVILLITRFFK
SIO_010081: BVAVS116_RS06630
subclass of: SO_0000673
so part of: BVAVS116_RS06630
location: 15507..15890
location: region:15507-15890:1
so has part: feature:15507-15890:1:exon

WP_244427562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15507-15890:1:exon

BVAVS116_RS04840
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04840
old locus tag: BVAVS116_O0027
pseudo: true
so part of: sequence
location: 16039..16456
location: region:16039-16456:1
so has part: feature:16039-16456:1:exon
subclass of: SO_0000010

63641735
type: Gene
SIO_000068: ncbigene

position:16039:1
position: 16039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16456:1
position: 16456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16039-16456:1:exon

BVAVS116_RS04840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04840
old locus tag: BVAVS116_O0027
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540110.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Mlp family lipoprotein
SIO_010081: BVAVS116_RS04840
subclass of: SO_0000673
so part of: BVAVS116_RS04840
location: 16039..16456
location: region:16039-16456:1
so has part: feature:16039-16456:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16039-16456:1:exon

BVAVS116_RS04845
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04845
pseudo: true
so part of: sequence
location: complement(16498..17396)
location: region:16498-17396:-1
so has part: feature:16498-17396:-1:exon
subclass of: SO_0000010

63641736
type: Gene
SIO_000068: ncbigene

position:16498:-1
position: 16498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17396:-1
position: 17396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16498-17396:-1:exon

BVAVS116_RS04845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017715.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ERF family protein
SIO_010081: BVAVS116_RS04845
subclass of: SO_0000673
so part of: BVAVS116_RS04845
location: complement(16498..17396)
location: region:16498-17396:-1
so has part: feature:16498-17396:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16498-17396:-1:exon

BVAVS116_RS04850
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04850
old locus tag: BVAVS116_O0031
so part of: sequence
location: 17838..18938
location: region:17838-18938:1
so has part: feature:17838-18938:1:exon
subclass of: SO_0000010

63641737
type: Gene
SIO_000068: ncbigene

position:17838:1
position: 17838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18938:1
position: 18938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17838-18938:1:exon

BVAVS116_RS04850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04850
old locus tag: BVAVS116_O0031
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012579169.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MSISTNKKSPNCKNKHQHKLIVLISTLKYINSKYQKYTQSNILYYFNKNLKRNGQNPIKLKTLQKYLYKLEKELKVTSNYHKHLGVNCGTEIYYKLNFSKKECYQKINQYFKEKKHSRFKKRVDNHYLGKFPLRGSVNLEECLSNKNNNIEEERNKQIEKFQIINYYNKCKFLSKKSLSLLNLNLNQDTMIEIFKTIKKIEISLIKNKNNDLNQPLFENKQNKLKEILINIQKELEKKGYNYEQLKKNFQKIYENYKLKPHFIIENQKYRDLHNIKRKLEKIIEIKKENSKKNYEHIKINIFNILIERLKNTTEIEVLKPILKDYLNVKKKLEYNKVFDKYYYELLEIIENEKTSLKLKEFSKKVV
SIO_010081: BVAVS116_RS04850
subclass of: SO_0000673
so part of: BVAVS116_RS04850
location: 17838..18938
location: region:17838-18938:1
so has part: feature:17838-18938:1:exon

WP_012664810.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17838-18938:1:exon

BVAVS116_RS04855
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04855
old locus tag: BVAVS116_O0032
so part of: sequence
location: 18948..19493
location: region:18948-19493:1
so has part: feature:18948-19493:1:exon
subclass of: SO_0000010

63641738
type: Gene
SIO_000068: ncbigene

position:18948:1
position: 18948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19493:1
position: 19493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18948-19493:1:exon

BVAVS116_RS04855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04855
old locus tag: BVAVS116_O0032
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010258842.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: METADEPTKKVECQNKDRFIKIEKENGKAMYHTKIMMDLYKFGVYEKKHKFRMSLRALHNGERIVQETHLYSIKEEDKFIGIFYGFRKPIKKAFVKYEAKGIRKSYGFAMTYYMEVRFKAGSVFFYFKGLYRFLDKKRMNNHYNKILFSMFTDLEKQVYEFYGKKYPEQGPLTKWIIKNLK
SIO_010081: BVAVS116_RS04855
subclass of: SO_0000673
so part of: BVAVS116_RS04855
location: 18948..19493
location: region:18948-19493:1
so has part: feature:18948-19493:1:exon

WP_012664811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18948-19493:1:exon

BVAVS116_RS04860
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04860
old locus tag: BVAVS116_O0033
so part of: sequence
location: 19469..20218
location: region:19469-20218:1
so has part: feature:19469-20218:1:exon
subclass of: SO_0000010

63641739
type: Gene
SIO_000068: ncbigene

position:19469:1
position: 19469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20218:1
position: 20218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19469-20218:1:exon

BVAVS116_RS04860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04860
old locus tag: BVAVS116_O0033
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010883829.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDNKKLKIITIASIKGGVGKSTSAIIFATLLANDCEVLLIDMDTQASVTSYFYKKIMESKFDLLEKNIYEVLKGNILIDNSIVNINNNLGLIPSYLSLHKFNKEAITFKEIKLQKQLLNLKFNYDYIIIDTNPSLDYTLTNALVCSDYVIVPITAEKWAVESLELLKFSISDLAIDIPIFLIITRFKKNNTHKILFNSLKDNKNFLGLVSEREDLNKKIAKDDLFNLDKDYMLEYKNILSRFKIITMSR
SIO_010081: BVAVS116_RS04860
subclass of: SO_0000673
so part of: BVAVS116_RS04860
location: 19469..20218
location: region:19469-20218:1
so has part: feature:19469-20218:1:exon

WP_012664812.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19469-20218:1:exon

BVAVS116_RS04865
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04865
old locus tag: BVAVS116_O0034
so part of: sequence
location: 20258..20779
location: region:20258-20779:1
so has part: feature:20258-20779:1:exon
subclass of: SO_0000010

63641740
type: Gene
SIO_000068: ncbigene

position:20258:1
position: 20258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20779:1
position: 20779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20258-20779:1:exon

BVAVS116_RS04865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04865
old locus tag: BVAVS116_O0034
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257945.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MDIVVNKRNLEVLNESEERYKNLKQRLKSSFQQEIYYKMEVIKILKEIKDNEYYKLDGYRTFEDFIKDYHLARSQAYDYLKIANAIQEGILEEAYVIENGISKAIAVLRESPSGLKKSKQNPIKPLRFQLKTKESYDFYKSNAKFTSFMMHEIFENQKDLINKLLKKYKQLKG
SIO_010081: BVAVS116_RS04865
subclass of: SO_0000673
so part of: BVAVS116_RS04865
location: 20258..20779
location: region:20258-20779:1
so has part: feature:20258-20779:1:exon

WP_012664813.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20258-20779:1:exon

BVAVS116_RS04870
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
gene: bdr
locus tag: BVAVS116_RS04870
old locus tag: BVAVS116_O0035
pseudo: true
so part of: sequence
location: 20792..21244
location: region:20792-21244:1
so has part: feature:20792-21244:1:exon
subclass of: SO_0000010

63641741
type: Gene
SIO_000068: ncbigene

position:20792:1
position: 20792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21244:1
position: 21244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20792-21244:1:exon

BVAVS116_RS04870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
gene: bdr
locus tag: BVAVS116_RS04870
old locus tag: BVAVS116_O0035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010258486.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Bdr family repetitive protein
SIO_010081: BVAVS116_RS04870
subclass of: SO_0000673
so part of: BVAVS116_RS04870
location: 20792..21244
location: region:20792-21244:1
so has part: feature:20792-21244:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20792-21244:1:exon

BVAVS116_RS04875
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04875
pseudo: true
so part of: sequence
location: 21513..22845
location: region:21513-22845:1
so has part: feature:21513-22845:1:exon
subclass of: SO_0000010

63641742
type: Gene
SIO_000068: ncbigene

position:21513:1
position: 21513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22845:1
position: 22845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21513-22845:1:exon

BVAVS116_RS04875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04875
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017696.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF244 domain-containing protein
SIO_010081: BVAVS116_RS04875
subclass of: SO_0000673
so part of: BVAVS116_RS04875
location: 21513..22845
location: region:21513-22845:1
so has part: feature:21513-22845:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21513-22845:1:exon

BVAVS116_RS04880
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04880
old locus tag: BVAVS116_O0041
so part of: sequence
location: 22903..23274
location: region:22903-23274:1
so has part: feature:22903-23274:1:exon
subclass of: SO_0000010

63641743
type: Gene
SIO_000068: ncbigene

position:22903:1
position: 22903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23274:1
position: 23274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22903-23274:1:exon

BVAVS116_RS04880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04880
old locus tag: BVAVS116_O0041
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010883923.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF261 family protein
translation: MIIGKIKQSNKGLLVEIQKWGRYFLCLHYYTSLFKKLEFNAFDINAAYYRFLGLGYIRSIARYETSSYFGSSNEFEISEVKIKGVNGFHFIATKEQEILYDSLDLKPRGKEFKVTLKRIFKFR
SIO_010081: BVAVS116_RS04880
subclass of: SO_0000673
so part of: BVAVS116_RS04880
location: 22903..23274
location: region:22903-23274:1
so has part: feature:22903-23274:1:exon

WP_012664817.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22903-23274:1:exon

BVAVS116_RS04885
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04885
pseudo: true
so part of: sequence
location: complement(<23289..24061)
location: region:23289-24061:-1
so has part: feature:23289-24061:-1:exon
subclass of: SO_0000010

63641744
type: Gene
SIO_000068: ncbigene

position:23289:-1
position: 23289
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:24061:-1
position: 24061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23289-24061:-1:exon

BVAVS116_RS04885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486141.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
SIO_010081: BVAVS116_RS04885
subclass of: SO_0000673
so part of: BVAVS116_RS04885
location: complement(<23289..24061)
location: region:23289-24061:-1
so has part: feature:23289-24061:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23289-24061:-1:exon

BVAVS116_RS04890
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04890
old locus tag: BVAVS116_O0043
so part of: sequence
location: 24499..25167
location: region:24499-25167:1
so has part: feature:24499-25167:1:exon
subclass of: SO_0000010

63641745
type: Gene
SIO_000068: ncbigene

position:24499:1
position: 24499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25167:1
position: 25167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24499-25167:1:exon

BVAVS116_RS04890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04890
old locus tag: BVAVS116_O0043
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010259002.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKKMFIICAVFALIISCKNYASGEDLKGLLQDSKSSDSKLSESEQDLKKQVKGFLDILDTKDLSLLDTKEIENKVQDLKEKIGKSNSKKTSLVTYFDYEELTKQLGEKFKSKGELKNQFKGLEDILETKKEERKKELEKAKQKFEEFKKQVDTTTGVTYGNQTQNQGRVGVQAWNCAKELGLNVSYSSNTGTDTNKLSKKVVDDALSKIEEELKKLENKKE
SIO_010081: BVAVS116_RS04890
subclass of: SO_0000673
so part of: BVAVS116_RS04890
location: 24499..25167
location: region:24499-25167:1
so has part: feature:24499-25167:1:exon

WP_012664819.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24499-25167:1:exon

BVAVS116_RS04895
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04895
old locus tag: BVAVS116_O0044
so part of: sequence
location: 25449..25937
location: region:25449-25937:1
so has part: feature:25449-25937:1:exon
subclass of: SO_0000010

63641746
type: Gene
SIO_000068: ncbigene

position:25449:1
position: 25449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25937:1
position: 25937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25449-25937:1:exon

BVAVS116_RS04895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04895
old locus tag: BVAVS116_O0044
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012599357.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF603 domain-containing protein
translation: MKKNKRPFDDYVAYFREGSLSNREIAAKLGVSRVTISEDTFEHFVAQTFRSEAKAKKVKGELDLELSNLELGFIRAFKQYSSIELASILSKIEDLRYEIESLNKKSEKGINEKINSLKSELNDLIKECSIREMELYYECMKKLVAAHEVESKSSYKSSKGYK
SIO_010081: BVAVS116_RS04895
subclass of: SO_0000673
so part of: BVAVS116_RS04895
location: 25449..25937
location: region:25449-25937:1
so has part: feature:25449-25937:1:exon

WP_012664820.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25449-25937:1:exon

BVAVS116_RS04900
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS04900
old locus tag: BVAVS116_O0045
pseudo: true
so part of: sequence
location: 25934..27342
location: region:25934-27342:1
so has part: feature:25934-27342:1:exon
subclass of: SO_0000010

63641747
type: Gene
SIO_000068: ncbigene

position:25934:1
position: 25934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27342:1
position: 27342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25934-27342:1:exon

BVAVS116_RS04900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS04900
old locus tag: BVAVS116_O0045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017644.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: PBSX family phage terminase large subunit
SIO_010081: BVAVS116_RS04900
subclass of: SO_0000673
so part of: BVAVS116_RS04900
location: 25934..27342
location: region:25934-27342:1
so has part: feature:25934-27342:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25934-27342:1:exon