Borreliella valaisiana VS116 plasmid VS116_cp32-5, complete sequence.
type: Entry
definition: Borreliella valaisiana VS116 plasmid VS116_cp32-5, complete sequence.
sequence version: NC_012128.1
sequence date: 2023-04-24
sequence: sequence
division: CON
label: NC_012128.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02436326
keyword: RefSeq
source: Borreliella valaisiana VS116
organism: Borreliella valaisiana VS116
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
references: 22207749
reference: 2
reference: 3
reference: 4
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001441.1.\nThe chromosome for this strain has been deposited under the Whole\nGenome Shotgun project accession ABCY00000000. The DNA or cells for\nthis strains can be obtained from Sherwood Casjens (Univ. of Utah,\nsherwood.casjens@path.utah.edu) or Benjamin J. Luft (SUNY at Stony\nBrook, bluft@notes.cc.sunysb.edu).\nThe DNA or cells for this strains can be obtained from Sherwood\nCasjens (Univ. of Utah, sherwood.casjens@path.utah.edu) or Benjamin\nJ. Luft (SUNY at Stony Brook, bluft@notes.cc.sunysb.edu)\nThis WGS record is a draft assembly, and may contain collapsed\nrepeats, missassemblies and/or low quality consensus bases. The\nplasmids were deposited in GenBank Accession Numbers\nCP001432-CP001442.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 01:26:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,249\nCDSs (total) :: 1,209\nGenes (coding) :: 1,142\nCDSs (with protein) :: 1,142\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 67\nCDSs (without protein) :: 67\nPseudo Genes (ambiguous residues) :: 0 of 67\nPseudo Genes (frameshifted) :: 49 of 67\nPseudo Genes (incomplete) :: 16 of 67\nPseudo Genes (internal stop) :: 41 of 67\nPseudo Genes (multiple problems) :: 33 of 67\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 23419
topology: circular
so has quality: SO_0000988
location: 1..23419
location: region:1-23419:1
RO_0002162: 445987

NC_012128
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02436326
type: BioSample
SIO_000068: biosample

1
title: Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii
author: Schutzer, S.E.
author: Fraser-Liggett, C.M.
author: Qiu, W.G.
author: Kraiczy, P.
author: Mongodin, E.F.
author: Dunn, J.J.
author: Luft, B.J.
author: Casjens, S.R.
journal: J Bacteriol
volume: 194
issue: 2
pages: 545-546
year: 2012
pubmed: 22207749

22207749
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, B.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
author: Sebastian, Y.
journal: Submitted (12-FEB-2009) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

3
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, B.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
author: Sebastian, Y.
journal: Submitted (06-JAN-2009) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

4
title: Direct Submission
author: Fraser-Liggett, C.M.
author: Mongodin, E.F.
author: Casjens, S.
author: Dunn, J.
author: Luft, B.
author: Qiu, W.
author: Schutzer, S.
journal: Submitted (12-JUN-2007) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23419:1
position: 23419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23419:1:source
so part of: sequence
organism: Borreliella valaisiana VS116
mol type: genomic DNA
strain: VS116
type material: type strain of Borreliella valaisiana
plasmid: VS116_cp32-5

445987
type: Taxonomy
SIO_000068: taxonomy

BVAVS116_RS05885
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05885
pseudo: true
so part of: sequence
location: 65..1292
location: region:65-1292:1
so has part: feature:65-1292:1:exon
subclass of: SO_0000010

63641918
type: Gene
SIO_000068: ncbigene

position:65:1
position: 65
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1292:1
position: 1292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65-1292:1:exon

BVAVS116_RS05885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012621337.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF1073 domain-containing protein
SIO_010081: BVAVS116_RS05885
subclass of: SO_0000673
so part of: BVAVS116_RS05885
location: 65..1292
location: region:65-1292:1
so has part: feature:65-1292:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:65-1292:1:exon

BVAVS116_RS05890
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05890
pseudo: true
so part of: sequence
location: 1309..2003
location: region:1309-2003:1
so has part: feature:1309-2003:1:exon
subclass of: SO_0000010

63641919
type: Gene
SIO_000068: ncbigene

position:1309:1
position: 1309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2003:1
position: 2003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1309-2003:1:exon

BVAVS116_RS05890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540092.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF1357 family protein
SIO_010081: BVAVS116_RS05890
subclass of: SO_0000673
so part of: BVAVS116_RS05890
location: 1309..2003
location: region:1309-2003:1
so has part: feature:1309-2003:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1309-2003:1:exon

BVAVS116_RS05895
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05895
old locus tag: BVAVS116_V0006
so part of: sequence
location: 2015..2581
location: region:2015-2581:1
so has part: feature:2015-2581:1:exon
subclass of: SO_0000010

63641920
type: Gene
SIO_000068: ncbigene

position:2015:1
position: 2015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2581:1
position: 2581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2015-2581:1:exon

BVAVS116_RS05895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05895
old locus tag: BVAVS116_V0006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010259399.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF228 domain-containing protein
translation: MSDITKIKQDFDKKVAEIKALMKNPQQDAGLFGNSIEFRDKNLIFSNSDGVCTSSKDKIENYPAKGYPYNLGVKLSFSEDSTTELEVEAGGGEDLYGICVDIDEFSKTATVVPITNNFEGYLVAKENGVKAKDKLFFNKDGELEKINGSAPQNKTTINAIALSDAKKISNDVYLVKVAVFGNKAISQN
SIO_010081: BVAVS116_RS05895
subclass of: SO_0000673
so part of: BVAVS116_RS05895
location: 2015..2581
location: region:2015-2581:1
so has part: feature:2015-2581:1:exon

WP_012664704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2015-2581:1:exon

BVAVS116_RS05900
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05900
old locus tag: BVAVS116_V0007
so part of: sequence
location: 2603..3562
location: region:2603-3562:1
so has part: feature:2603-3562:1:exon
subclass of: SO_0000010

63641921
type: Gene
SIO_000068: ncbigene

position:2603:1
position: 2603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3562:1
position: 3562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2603-3562:1:exon

BVAVS116_RS05900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05900
old locus tag: BVAVS116_V0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010883814.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MELVDENYYAKVVANIIGEIKDPIMYKWFLPEQIEDVDLQMGYQKTVKWDAFLNANPTTIANEVNTISTIGFSSEVVRLNYLKLQYKFRHLKQTSEKFYTSDSYIGDINNNLLPFAQAYKLASSEIIKLINHFVLTGTVSIQKDGKNQKRLLPNMYGLLNMPYQVKEEVDNGNMDKMDKIFEKIESGLSKLELGDEFSTPMMVIVDPTTSLKLVKPYAATQAPAISCEKWEDVLIQTIKAINNREDVYIETSNLLKHQILVYPLNPKLIKFKTSKYMLSTPNEQVDRDSTDIAHSYIDFVLGGLLATKNTILQVNIIQS
SIO_010081: BVAVS116_RS05900
subclass of: SO_0000673
so part of: BVAVS116_RS05900
location: 2603..3562
location: region:2603-3562:1
so has part: feature:2603-3562:1:exon

WP_012664705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2603-3562:1:exon

BVAVS116_RS05905
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05905
old locus tag: BVAVS116_V0008
so part of: sequence
location: 3582..4037
location: region:3582-4037:1
so has part: feature:3582-4037:1:exon
subclass of: SO_0000010

63641922
type: Gene
SIO_000068: ncbigene

position:3582:1
position: 3582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4037:1
position: 4037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3582-4037:1:exon

BVAVS116_RS05905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05905
old locus tag: BVAVS116_V0008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540034.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3890 domain-containing protein
translation: MSEQKDFQTQVQNEEELLVTKLQNKVLLLLGIDKFALSRQNFLLHLSLLQAILVTRGIDASSLTYEQIFLLTFYHMGCQLRKQGVVREFEFERIKKEKFNELEIDYYPSSSKSEESSGESCAASKNFCLQLDAFLEKLKRDTSTPSCMGVV
SIO_010081: BVAVS116_RS05905
subclass of: SO_0000673
so part of: BVAVS116_RS05905
location: 3582..4037
location: region:3582-4037:1
so has part: feature:3582-4037:1:exon

WP_012664706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3582-4037:1:exon

BVAVS116_RS05910
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05910
old locus tag: BVAVS116_V0009
so part of: sequence
location: 4037..4420
location: region:4037-4420:1
so has part: feature:4037-4420:1:exon
subclass of: SO_0000010

63641923
type: Gene
SIO_000068: ncbigene

position:4420:1
position: 4420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4037-4420:1:exon

BVAVS116_RS05910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05910
old locus tag: BVAVS116_V0009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017732.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1506 family protein
translation: MSGIRKRLADMSARIINVFKDPEPLRFYKGNIIKLDNGDSYQRIFDKNEYTEFIGVIIDIKPQELTVLHNSNLFDIQGYSKLYTYADLDYELKDRISISYSVYFEIFSIDSSIVYFTLVLKEFVWTT
SIO_010081: BVAVS116_RS05910
subclass of: SO_0000673
so part of: BVAVS116_RS05910
location: 4037..4420
location: region:4037-4420:1
so has part: feature:4037-4420:1:exon

WP_012664707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4037-4420:1:exon

BVAVS116_RS05915
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05915
pseudo: true
so part of: sequence
location: 4477..4796
location: region:4477-4796:1
so has part: feature:4477-4796:1:exon
subclass of: SO_0000010

63641924
type: Gene
SIO_000068: ncbigene

position:4477:1
position: 4477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4796:1
position: 4796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4477-4796:1:exon

BVAVS116_RS05915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010261155.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: BVAVS116_RS05915
subclass of: SO_0000673
so part of: BVAVS116_RS05915
location: 4477..4796
location: region:4477-4796:1
so has part: feature:4477-4796:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4477-4796:1:exon

BVAVS116_RS05920
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05920
old locus tag: BVAVS116_V0011
so part of: sequence
location: 4793..5362
location: region:4793-5362:1
so has part: feature:4793-5362:1:exon
subclass of: SO_0000010

63641925
type: Gene
SIO_000068: ncbigene

position:4793:1
position: 4793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5362:1
position: 5362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4793-5362:1:exon

BVAVS116_RS05920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05920
old locus tag: BVAVS116_V0011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002658435.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF764 family protein
translation: MIVTLDIIVSYLLKIFQGFKAYATENDFECDIINTYNHPYLSKITTSSPNIIAFKFNGTQHLFDHNCKTGAFYDNALEFSLNFQIYIIAIVLNDRDFDANSRMLVLYGLLSEFMHKKTYNYTLSNPHQSEYVTKISFYIYPISNMQTVGRISLGTKYSNHAYSASVACNASIKAIEILKGGYKIATRYN
SIO_010081: BVAVS116_RS05920
subclass of: SO_0000673
so part of: BVAVS116_RS05920
location: 4793..5362
location: region:4793-5362:1
so has part: feature:4793-5362:1:exon

WP_012664709.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4793-5362:1:exon

BVAVS116_RS05925
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05925
old locus tag: BVAVS116_V0012
so part of: sequence
location: 5343..6464
location: region:5343-6464:1
so has part: feature:5343-6464:1:exon
subclass of: SO_0000010

63641926
type: Gene
SIO_000068: ncbigene

position:5343:1
position: 5343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6464:1
position: 6464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5343-6464:1:exon

BVAVS116_RS05925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05925
old locus tag: BVAVS116_V0012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017491.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF787 family protein
translation: MPQDTISVSLVTSRIQTNKPNYYNPLLVYKAAKIKVNKDTADYKILSLTINNYEQQIETLEKDNENGEPQFGKEKTLLKTAMSDFFNSSEEPLKSAILFIYKEKPKKLKDYLKEHRHSFVVLINTQSDNGNSDDGLTVYKDDYNKFKMPSTFFVFSTKEDSIKEIFNNGKGNTEKARNIVVYSNNQDNLHLKFVSQYLHQASISHSTNPYGMPLSAVPLVDDTVIGKLRTTNINFYALLNETGLDGMHAFKEGVDLAGNPIDELFTYHYIKNEAIIELIRIWNKNNRQNSKLSALQLSGARYNAYTSAIECMLKRFVDRELIIEYKDLKLILSPSSNLKLELSVNITYNFSINSVALVITSQYIVDYQNSLRV
SIO_010081: BVAVS116_RS05925
subclass of: SO_0000673
so part of: BVAVS116_RS05925
location: 5343..6464
location: region:5343-6464:1
so has part: feature:5343-6464:1:exon

WP_012664710.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5343-6464:1:exon

BVAVS116_RS05930
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05930
old locus tag: BVAVS116_V0013
so part of: sequence
location: 6478..6906
location: region:6478-6906:1
so has part: feature:6478-6906:1:exon
subclass of: SO_0000010

63641927
type: Gene
SIO_000068: ncbigene

position:6478:1
position: 6478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6906:1
position: 6906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6478-6906:1:exon

BVAVS116_RS05930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05930
old locus tag: BVAVS116_V0013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012621350.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1463 family protein
translation: MQFYDLRKVYFSIGGRQLHSGKLELTSEPTTRAVVSNEDKGMPVISLRDPKTITYVFNIEVTLGSYDYILLTEISDDQFYNMDVSKYDKMLDLVFNDRIATKIITNYAIFTEEPARSYSAEAEKVTFEIRAINCQKTSPNKN
SIO_010081: BVAVS116_RS05930
subclass of: SO_0000673
so part of: BVAVS116_RS05930
location: 6478..6906
location: region:6478-6906:1
so has part: feature:6478-6906:1:exon

WP_012664711.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6478-6906:1:exon

BVAVS116_RS05935
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05935
old locus tag: BVAVS116_V0014
so part of: sequence
location: 6922..7338
location: region:6922-7338:1
so has part: feature:6922-7338:1:exon
subclass of: SO_0000010

63641928
type: Gene
SIO_000068: ncbigene

position:6922:1
position: 6922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7338:1
position: 7338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6922-7338:1:exon

BVAVS116_RS05935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05935
old locus tag: BVAVS116_V0014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683066.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1473 family protein
translation: MIMRYKMKILTKNKTYEYPLRVLPVYEWDKVLGFNQGDAVYKLNEVKYLREITGLMISPKFLDEFYAILDANREFISYYKDYLVAIIYTAQFNTFHMDNDLKTPALVYLSEYENNVGDFVTFDYINDNFDYTNTYIKF
SIO_010081: BVAVS116_RS05935
subclass of: SO_0000673
so part of: BVAVS116_RS05935
location: 6922..7338
location: region:6922-7338:1
so has part: feature:6922-7338:1:exon

WP_012664712.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6922-7338:1:exon

BVAVS116_RS05940
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05940
old locus tag: BVAVS116_V0015
so part of: sequence
location: 7354..7620
location: region:7354-7620:1
so has part: feature:7354-7620:1:exon
subclass of: SO_0000010

63641929
type: Gene
SIO_000068: ncbigene

position:7354:1
position: 7354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7620:1
position: 7620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7354-7620:1:exon

BVAVS116_RS05940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05940
old locus tag: BVAVS116_V0015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017452.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1322 family protein
translation: MSKRNRELDQALASLNEIRKKYFNLLDEIKNNKYYFPVIMNICSYENVKKLPYDELIEVNQISDFKLEKELYELILSKLGLNERQIHH
SIO_010081: BVAVS116_RS05940
subclass of: SO_0000673
so part of: BVAVS116_RS05940
location: 7354..7620
location: region:7354-7620:1
so has part: feature:7354-7620:1:exon

WP_012664713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7354-7620:1:exon

BVAVS116_RS05945
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05945
pseudo: true
so part of: sequence
location: 7598..8848
location: region:7598-8848:1
so has part: feature:7598-8848:1:exon
subclass of: SO_0000010

63641930
type: Gene
SIO_000068: ncbigene

position:7598:1
position: 7598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8848:1
position: 8848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7598-8848:1:exon

BVAVS116_RS05945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010256317.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF759 family protein
SIO_010081: BVAVS116_RS05945
subclass of: SO_0000673
so part of: BVAVS116_RS05945
location: 7598..8848
location: region:7598-8848:1
so has part: feature:7598-8848:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7598-8848:1:exon

BVAVS116_RS06435
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06435
old locus tag: BVAVS116_V0019
so part of: sequence
location: 8851..9210
location: region:8851-9210:1
so has part: feature:8851-9210:1:exon
subclass of: SO_0000010

63641993
type: Gene
SIO_000068: ncbigene

position:8851:1
position: 8851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9210:1
position: 9210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8851-9210:1:exon

BVAVS116_RS06435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06435
old locus tag: BVAVS116_V0019
inference: COORDINATES: protein motif:HMM:NF016941.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF685 domain-containing protein
translation: MPNSSSIQKTPISKQLLGVPSDFTHGRSFAFGPTLYSYEYKDKSITIKMENSDTATLVFYKYNDNYPIYLDIELDVEHYNNITTKAVYLKYNDETEKSMVYEQSYSPRGLSSRVPIYKG
SIO_010081: BVAVS116_RS06435
subclass of: SO_0000673
so part of: BVAVS116_RS06435
location: 8851..9210
location: region:8851-9210:1
so has part: feature:8851-9210:1:exon

WP_095456349.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8851-9210:1:exon

BVAVS116_RS05955
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05955
old locus tag: BVAVS116_V0020
so part of: sequence
location: 9342..9536
location: region:9342-9536:1
so has part: feature:9342-9536:1:exon
subclass of: SO_0000010

63641931
type: Gene
SIO_000068: ncbigene

position:9342:1
position: 9342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9536:1
position: 9536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9342-9536:1:exon

BVAVS116_RS05955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05955
old locus tag: BVAVS116_V0020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002658481.1
GO function: GO:0140911 - pore-forming activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BlyA family holin
translation: MDIKITELLINLNEIKLIAVMIFVTVLVLGRLILLKPLLKDILSIVIGEIFRNGNGNNHIKKRD
SIO_010081: BVAVS116_RS05955
subclass of: SO_0000673
so part of: BVAVS116_RS05955
location: 9342..9536
location: region:9342-9536:1
so has part: feature:9342-9536:1:exon

WP_012664718.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9342-9536:1:exon

BVAVS116_RS05960
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05960
old locus tag: BVAVS116_V0021
so part of: sequence
location: 9540..9887
location: region:9540-9887:1
so has part: feature:9540-9887:1:exon
subclass of: SO_0000010

63641932
type: Gene
SIO_000068: ncbigene

position:9540:1
position: 9540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9887:1
position: 9887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9540-9887:1:exon

BVAVS116_RS05960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05960
old locus tag: BVAVS116_V0021
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257832.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BlyB family putative holin accessory protein
translation: MKLSKDNLEIGLTSISTLIDVFSKFEDEFDEIAHKGFFLVYELYSHYKLIYKANMERLENTLTPTIAETLAPLNEKINQCIDLINSNEKNLKISNNLKFNKEGKPIYQEGANNAK
SIO_010081: BVAVS116_RS05960
subclass of: SO_0000673
so part of: BVAVS116_RS05960
location: 9540..9887
location: region:9540-9887:1
so has part: feature:9540-9887:1:exon

WP_012664719.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9540-9887:1:exon

BVAVS116_RS05965
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05965
old locus tag: BVAVS116_V0022
pseudo: true
so part of: sequence
location: 9877..10216
location: region:9877-10216:1
so has part: feature:9877-10216:1:exon
subclass of: SO_0000010

63641933
type: Gene
SIO_000068: ncbigene

position:9877:1
position: 9877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10216:1
position: 10216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9877-10216:1:exon

BVAVS116_RS05965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05965
old locus tag: BVAVS116_V0022
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486154.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: BlyB family putative holin accessory protein
SIO_010081: BVAVS116_RS05965
subclass of: SO_0000673
so part of: BVAVS116_RS05965
location: 9877..10216
location: region:9877-10216:1
so has part: feature:9877-10216:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9877-10216:1:exon

BVAVS116_RS05970
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05970
old locus tag: BVAVS116_V0023
so part of: sequence
location: 10209..10538
location: region:10209-10538:1
so has part: feature:10209-10538:1:exon
subclass of: SO_0000010

63641934
type: Gene
SIO_000068: ncbigene

position:10209:1
position: 10209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10538:1
position: 10538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10209-10538:1:exon

BVAVS116_RS05970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05970
old locus tag: BVAVS116_V0023
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006434237.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BBA14 family lipoprotein
translation: MLKLSNYLLITLLLCCTTIASLPEEPEPPIIQTLESLAKYEAQLSDYVMYLVTFLSKTKSKVNDPNYPTYTYPDLSKLKDEHSITSIRHNIKLLLEYIQKNKTYGKKSL
SIO_010081: BVAVS116_RS05970
subclass of: SO_0000673
so part of: BVAVS116_RS05970
location: 10209..10538
location: region:10209-10538:1
so has part: feature:10209-10538:1:exon

WP_012664721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10209-10538:1:exon

BVAVS116_RS05975
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05975
old locus tag: BVAVS116_V0024
so part of: sequence
location: 10801..11286
location: region:10801-11286:1
so has part: feature:10801-11286:1:exon
subclass of: SO_0000010

63641935
type: Gene
SIO_000068: ncbigene

position:10801:1
position: 10801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11286:1
position: 11286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10801-11286:1:exon

BVAVS116_RS05975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05975
old locus tag: BVAVS116_V0024
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486207.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mlp family lipoprotein
translation: MKIINVLFCLFLLILNSCNANDNDTFKNKNQPIEPQQAKNKEKYNLGQKELQKGVLKKPQKEIPKSREDLLKEKLTDDQKIRLDWLKTALTGEGEFDRFLQHDENKIKIALDHIKTELDKCKGKQTAAEQEAIFKGIVQGSLHGNDINQVQQAICLCDIYP
SIO_010081: BVAVS116_RS05975
subclass of: SO_0000673
so part of: BVAVS116_RS05975
location: 10801..11286
location: region:10801-11286:1
so has part: feature:10801-11286:1:exon

WP_012664722.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10801-11286:1:exon

BVAVS116_RS05980
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05980
pseudo: true
so part of: sequence
location: complement(11326..12343)
location: region:11326-12343:-1
so has part: feature:11326-12343:-1:exon
subclass of: SO_0000010

63641936
type: Gene
SIO_000068: ncbigene

position:11326:-1
position: 11326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12343:-1
position: 12343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11326-12343:-1:exon

BVAVS116_RS05980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006434309.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ERF family protein
SIO_010081: BVAVS116_RS05980
subclass of: SO_0000673
so part of: BVAVS116_RS05980
location: complement(11326..12343)
location: region:11326-12343:-1
so has part: feature:11326-12343:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11326-12343:-1:exon

BVAVS116_RS05985
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05985
old locus tag: BVAVS116_V0028
so part of: sequence
location: 12731..13822
location: region:12731-13822:1
so has part: feature:12731-13822:1:exon
subclass of: SO_0000010

63641937
type: Gene
SIO_000068: ncbigene

position:12731:1
position: 12731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13822:1
position: 13822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12731-13822:1:exon

BVAVS116_RS05985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05985
old locus tag: BVAVS116_V0028
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703963.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MSIPINKKSPNCYNKHQHKLIVLISTLDYINKKYPKYTQSIILYCFNKNLKRNGQNPIKLKTLQNYLYELEKKLKVTTNYYKHMGVNCGTEIYYKLNYQKKECYPKINKFFLGKKHSRFGKRVEIGLKEKFNKNGSVDFKECLSNKNNNIKEEKNKKIEKFQIIKYANKCNFKYKEILPFILNLDFNKDAKIKMLKVSKIIEIKLLKSKNLFLNQSFFKEKQKKLKEIIENTKKQLEKNGYNVEQLETEFKKIYENYKNKPHFIIEHQKYNDLGKITFKLEKSIELKKENSQKDCENMKKNIFNILIERLKEKANIEIIKPIIKTYLNSKKKLEYNKVFGTYHDELLELIKNENNSLILKKVI
SIO_010081: BVAVS116_RS05985
subclass of: SO_0000673
so part of: BVAVS116_RS05985
location: 12731..13822
location: region:12731-13822:1
so has part: feature:12731-13822:1:exon

WP_012664726.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12731-13822:1:exon

BVAVS116_RS05990
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05990
old locus tag: BVAVS116_V0029
so part of: sequence
location: 13832..14389
location: region:13832-14389:1
so has part: feature:13832-14389:1:exon
subclass of: SO_0000010

63641938
type: Gene
SIO_000068: ncbigene

position:13832:1
position: 13832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14389:1
position: 14389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13832-14389:1:exon

BVAVS116_RS05990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05990
old locus tag: BVAVS116_V0029
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017692.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MKSAPEPTKKGKCKVECQNKERFILIEKENGKAMYHTKIMMDVYKFGVYEKKNEFRVSLRALHNGERIVEETHLYPIKEGDKFIGIFYGFRKPIKKAFVKYETNGNRKSYGFARAYYMEVRFKAGSVFFYFKGLYRLLDKQRMNNHYNKILFSMFTDLEKQVYEFYGKKYPEQGPLTKWIIKNLK
SIO_010081: BVAVS116_RS05990
subclass of: SO_0000673
so part of: BVAVS116_RS05990
location: 13832..14389
location: region:13832-14389:1
so has part: feature:13832-14389:1:exon

WP_012664727.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13832-14389:1:exon

BVAVS116_RS05995
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS05995
old locus tag: BVAVS116_V0030
so part of: sequence
location: 14365..15138
location: region:14365-15138:1
so has part: feature:14365-15138:1:exon
subclass of: SO_0000010

63641939
type: Gene
SIO_000068: ncbigene

position:14365:1
position: 14365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15138:1
position: 15138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14365-15138:1:exon

BVAVS116_RS05995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS05995
old locus tag: BVAVS116_V0030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257942.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDNKKPKIITIASLKGGVGKSTTSIILATLLSKSKKILLIDIDTQASITSFYFNNIQNKNFNLENSNIYEILREGALEIRDVIINIDNNLDLIPSYLSLHKFNQEAIPFKELRLKKKLESIQDNYDYIIIDTPPSLDFSLTNALVSSQYVLVPITAEKWSVESLDLLEFYSRKIGTNAPIFILVTRFKKNNTHKQLLDILQLREDYLGIISEREDLNRRIAENDQFDLNKDYVCEYKKILECFLNKMQVTPSFGWRI
SIO_010081: BVAVS116_RS05995
subclass of: SO_0000673
so part of: BVAVS116_RS05995
location: 14365..15138
location: region:14365-15138:1
so has part: feature:14365-15138:1:exon

WP_012664728.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14365-15138:1:exon

BVAVS116_RS06000
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06000
old locus tag: BVAVS116_V0031
so part of: sequence
location: 15200..15724
location: region:15200-15724:1
so has part: feature:15200-15724:1:exon
subclass of: SO_0000010

63641940
type: Gene
SIO_000068: ncbigene

position:15200:1
position: 15200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15724:1
position: 15724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15200-15724:1:exon

BVAVS116_RS06000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06000
old locus tag: BVAVS116_V0031
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257945.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MNIQLNKRNLSTDNDVMVRYKSLKSQLTINVKSEICSRLETMKILKEIKDNEYYKLDGYKSFEDFTKDYKLAKTQAYDYLRIANAIEEGIIEEEFLVQNGFRQTLFVIRNKKGLTIKKSKQNWIKPLRFQLKKQESYDFYKKHAKFTSFMMDEIFENQKDFLNKLLKKYKELKG
SIO_010081: BVAVS116_RS06000
subclass of: SO_0000673
so part of: BVAVS116_RS06000
location: 15200..15724
location: region:15200-15724:1
so has part: feature:15200-15724:1:exon

WP_012664729.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15200-15724:1:exon

BVAVS116_RS06005
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
gene: bdr
locus tag: BVAVS116_RS06005
old locus tag: BVAVS116_V0032
so part of: sequence
location: 15738..16067
location: region:15738-16067:1
so has part: feature:15738-16067:1:exon
subclass of: SO_0000010

63641941
type: Gene
SIO_000068: ncbigene

position:15738:1
position: 15738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16067:1
position: 16067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15738-16067:1:exon

BVAVS116_RS06005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
gene: bdr
locus tag: BVAVS116_RS06005
old locus tag: BVAVS116_V0032
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011600692.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MSNLAHNAVKIKNIRLEFLNKGFSEEAIDFVFLHNDNYNFEYLKEKLIDVEKTLRKDISNLDTKIDNEVKNLRKDLNMGNRLIHFMILVAAIFGPILNALFMKYLQYIK
SIO_010081: BVAVS116_RS06005
subclass of: SO_0000673
so part of: BVAVS116_RS06005
location: 15738..16067
location: region:15738-16067:1
so has part: feature:15738-16067:1:exon

WP_012664730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15738-16067:1:exon

BVAVS116_RS06010
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06010
old locus tag: BVAVS116_V0033
so part of: sequence
location: 16595..17926
location: region:16595-17926:1
so has part: feature:16595-17926:1:exon
subclass of: SO_0000010

63641942
type: Gene
SIO_000068: ncbigene

position:16595:1
position: 16595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17926:1
position: 17926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16595-17926:1:exon

BVAVS116_RS06010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06010
old locus tag: BVAVS116_V0033
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486277.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF244 domain-containing protein
translation: MSYIEKNQENIQNGVSNIIHTKQQSFIGFEVFEKKFSPVKEKSKLSKIGKKLPGISSQECFRFNRNIDFSLQRSKLDKYGASEVGTVVIGGAGLKDVMINSVLKYFGMNLPFEENLYMLKGKELENLGFREFVKAYGDTIAVLYKNKYANSVDKYNYFKKMDNFEPLVGSTIDGWFMNIYGDIELLEIKSSDSHYMSSAIEEYDKNGNFLISKYFFKYYVQAQMQLVCTGLEYCNLFFLIDVASVNCKIKRNDFLISKVLNFVLKCEREVFNIRTEIVKNNQAKLLISNNIDNDTFNKLVEEIEELVVKSDFYQSGVEFDWINEFVEYVDCINLEIKTEESAINLEENLIEINNLKVELNKIQNENKKREKPIKDLLKIKIDKIMDQYPLINHVNYKFKQFMFNYDPKKRAISDRFKELIPINNKVFMPSNISNIAYENSVPF
SIO_010081: BVAVS116_RS06010
subclass of: SO_0000673
so part of: BVAVS116_RS06010
location: 16595..17926
location: region:16595-17926:1
so has part: feature:16595-17926:1:exon

WP_012664731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16595-17926:1:exon

BVAVS116_RS06015
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06015
old locus tag: BVAVS116_V0034
so part of: sequence
location: 17983..18408
location: region:17983-18408:1
so has part: feature:17983-18408:1:exon
subclass of: SO_0000010

63641943
type: Gene
SIO_000068: ncbigene

position:17983:1
position: 17983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18408:1
position: 18408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17983-18408:1:exon

BVAVS116_RS06015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06015
old locus tag: BVAVS116_V0034
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010883923.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF261 domain-containing protein
translation: MLISEIKQNNRSLRVEIQRWGCYFLCLHYYVSVFKKLEFTVFGINSAYYRFLGLGYIKSNCFIKNPCMILNYYGIRTSVRYESFGYFGAANEFEISEVKITGVNGSHFIATKEQEILYDSLDLKPRGKLFKLISKRIFKLK
SIO_010081: BVAVS116_RS06015
subclass of: SO_0000673
so part of: BVAVS116_RS06015
location: 17983..18408
location: region:17983-18408:1
so has part: feature:17983-18408:1:exon

WP_012664732.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17983-18408:1:exon

BVAVS116_RS06020
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06020
old locus tag: BVAVS116_V0035
so part of: sequence
location: complement(18414..19190)
location: region:18414-19190:-1
so has part: feature:18414-19190:-1:exon
subclass of: SO_0000010

63641944
type: Gene
SIO_000068: ncbigene

position:18414:-1
position: 18414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19190:-1
position: 19190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18414-19190:-1:exon

BVAVS116_RS06020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06020
old locus tag: BVAVS116_V0035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486141.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MDINNYLNLNNGGTDFILKLLKDYQKVIDENKILKNTLKNSTKPKKENPIPSPRFYLTPKTGKIIVKCIKQLKQTDLISGWFVHLLSISGCRGTEIQKVKLQDITQLSNKTGEIYYNIKVNVAKKRNITCIREIIINSKEYAAIQTAHKNHFEEKNIDTRRTYLFQKTKHKFKDNQISIINISRKFKNLLKKSGFKANKSLHLCRNLFISNLKANGYNSFQIKELIKYHSTSEIDNIYGLSSANKIQAYKCAKNSLKL
SIO_010081: BVAVS116_RS06020
subclass of: SO_0000673
so part of: BVAVS116_RS06020
location: complement(18414..19190)
location: region:18414-19190:-1
so has part: feature:18414-19190:-1:exon

WP_012664733.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18414-19190:-1:exon

BVAVS116_RS06025
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06025
old locus tag: BVAVS116_V0036
so part of: sequence
location: 19610..20128
location: region:19610-20128:1
so has part: feature:19610-20128:1:exon
subclass of: SO_0000010

63641945
type: Gene
SIO_000068: ncbigene

position:19610:1
position: 19610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20128:1
position: 20128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19610-20128:1:exon

BVAVS116_RS06025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06025
old locus tag: BVAVS116_V0036
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011600688.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Erp family outer-surface lipoprotein
translation: MNKKMFIICSVFSLIISCENFTSRLSEQGRLSEQDISLRGQVSSDTIKFSEFTVKIKNKDTNSSWIDLGVLVIRKEIDGIETGLNAKGHSATFFSLEELEVNNFVKAMTEGGSFKTNLYYGYKDEQSITNGIKDKNIITKIENINGSEHITFLGDKTAEYAIPLEELKKNLK
SIO_010081: BVAVS116_RS06025
subclass of: SO_0000673
so part of: BVAVS116_RS06025
location: 19610..20128
location: region:19610-20128:1
so has part: feature:19610-20128:1:exon

WP_012664734.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19610-20128:1:exon

BVAVS116_RS06030
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06030
old locus tag: BVAVS116_V0037
so part of: sequence
location: 20156..20977
location: region:20156-20977:1
so has part: feature:20156-20977:1:exon
subclass of: SO_0000010

63641946
type: Gene
SIO_000068: ncbigene

position:20156:1
position: 20156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20977:1
position: 20977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20156-20977:1:exon

BVAVS116_RS06030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06030
old locus tag: BVAVS116_V0037
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017754.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKKIYIICAFFILISSCKYNANNKDLKNLEQNVKGKVKGFLDIKKGELIGGLKKLGGEASLKVEEELMQGDYSNNILFNPPTTLLASHHDNVPVLKMAQSGDQQEVKKEDKEKEEIEKKNRELKDKIEKSNKKTSIETYLKYEEEIKKIVEELEEKLKDKKEDKEKLEKELETLKKTLKEKIEKRKKELENAQKKFAEFEKQFTGITGVTDGDKAQNRGKVGRQAWTEAQELGLSVNSSGGSAGTGDMAKGIIDGVLKQIEEELKKVENKKE
SIO_010081: BVAVS116_RS06030
subclass of: SO_0000673
so part of: BVAVS116_RS06030
location: 20156..20977
location: region:20156-20977:1
so has part: feature:20156-20977:1:exon

WP_012664735.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20156-20977:1:exon

BVAVS116_RS06040
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06040
pseudo: true
so part of: sequence
location: 21497..22064
location: region:21497-22064:1
so has part: feature:21497-22064:1:exon
subclass of: SO_0000010

63641947
type: Gene
SIO_000068: ncbigene

position:21497:1
position: 21497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22064:1
position: 22064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21497-22064:1:exon

BVAVS116_RS06040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486169.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF603 domain-containing protein
SIO_010081: BVAVS116_RS06040
subclass of: SO_0000673
so part of: BVAVS116_RS06040
location: 21497..22064
location: region:21497-22064:1
so has part: feature:21497-22064:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21497-22064:1:exon

BVAVS116_RS06045
type: Gene
subclass of: SO_0000704
RO_0002162: 445987
locus tag: BVAVS116_RS06045
old locus tag: BVAVS116_V0042
pseudo: true
so part of: sequence
location: 22061..23419
location: region:22061-23419:1
so has part: feature:22061-23419:1:exon
subclass of: SO_0000010

63641948
type: Gene
SIO_000068: ncbigene

position:22061:1
position: 22061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22061-23419:1:exon

BVAVS116_RS06045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 445987
locus tag: BVAVS116_RS06045
old locus tag: BVAVS116_V0042
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017644.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: PBSX family phage terminase large subunit
SIO_010081: BVAVS116_RS06045
subclass of: SO_0000673
so part of: BVAVS116_RS06045
location: 22061..23419
location: region:22061-23419:1
so has part: feature:22061-23419:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22061-23419:1:exon