Melospiza georgiana isolate bMelGeo1 chromosome W, bMelGeo1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Melospiza.
REFSEQ INFORMATION: The reference sequence is identical to\nCM051597.1.\nAssembly name: bMelGeo1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/01/31. The original whole-genome shotgun project has the\naccession JAQMCQ000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 20-MAY-2022\nAssembly Method :: HiFiasm v. 0.15.4 + galaxy0; purge_dups\n v. 1.2.5 + galaxy3; Bionano Solve v.\n 3.6.1 + galaxy2; salsa v. 2.3 + galaxy2\nAssembly Name :: bMelGeo1.pri\nDiploid :: Principal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 31.58x\nSequencing Technology :: PacBio Sequel II HiFi\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028018845.1-RS_2023_07\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 07/03/2023\n##Genome-Annotation-Data-END##
transportin-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transportin-1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transportin-1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
transportin-1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon.
homer protein homolog 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
splicing regulatory glutamine/lysine-rich protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
splicing regulatory glutamine/lysine-rich protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 4 Proteins
acetyl-coenzyme A thioesterase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: acetyl-coenzyme A thioesterase-like
cytochrome c oxidase subunit 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC131095432; Derived by automated computational analysis using gene prediction method: Gnomon.
transitional endoplasmic reticulum ATPase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transitional endoplasmic reticulum ATPase-like
arrestin domain-containing protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
arrestin domain-containing protein 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
mesoderm induction early response protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mesoderm induction early response protein 3-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
mesoderm induction early response protein 3-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
mesoderm induction early response protein 3-like isoform X1
mesoderm induction early response protein 3-like isoform X2
activated RNA polymerase II transcriptional coactivator p15; Derived by automated computational analysis using gene prediction method: Gnomon.
activated RNA polymerase II transcriptional coactivator p15
zinc finger RNA-binding protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 13 Proteins
small nucleolar RNA SNORA66; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00155
Derived by automated computational analysis using gene prediction method: cmsearch.
uncharacterized LOC131095393; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA glycine (anticodon GCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Golgi phosphoprotein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
zinc finger protein 131-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 131-like, transcript variant X2
zinc finger protein 131-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
uncharacterized LOC131095390; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131095395; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC131095395
CBP80/20-dependent translation initiation factor-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 7-like
large ribosomal subunit protein uL22-like; Derived by automated computational analysis using gene prediction method: Gnomon.
large ribosomal subunit protein uL22-like
small nucleolar RNA SNORD58; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00151
ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
mothers against decapentaplegic homolog 4; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 4
mex-3 RNA binding family member C; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
RNA-binding E3 ubiquitin-protein ligase MEX3C
vasculin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
guanine nucleotide-binding protein G(q) subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
guanine nucleotide-binding protein G(q) subunit alpha
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins
protein patched homolog 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
protein ARK2N-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein ARK2N-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 9 Proteins
protein ARK2N-like, transcript variant X1
ATP synthase subunit alpha, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP synthase subunit alpha, mitochondrial-like, transcript variant X1
ATP synthase subunit alpha, mitochondrial-like, transcript variant X2
ATP synthase subunit alpha, mitochondrial-like isoform X1
ATP synthase subunit alpha, mitochondrial-like isoform X2
mothers against decapentaplegic homolog 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 long SRA reads, 38 Proteins
uncharacterized LOC131095416; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 ubiquitin-protein ligase KCMF1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ras-related protein Rab-7a-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
chondroadherin-like protein; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 2 bases in 2 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: chondroadherin-like protein
sorting nexin-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein FAM219A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein FAM219A-like, transcript variant X1
protein FAM219A-like, transcript variant X2
uncharacterized LOC131095420; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC131095420
transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
dual specificity protein kinase TTK-like; Derived by automated computational analysis using gene prediction method: Gnomon.
dual specificity protein kinase TTK-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: dual specificity protein kinase TTK-like
DDB1- and CUL4-associated factor 12-like; Derived by automated computational analysis using gene prediction method: Gnomon.
DDB1- and CUL4-associated factor 12-like
ubiquitin-associated protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
uncharacterized LOC131095423; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC131095423
AN1-type zinc finger protein 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
chromodomain-helicase-DNA-binding protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
chromodomain-helicase-DNA-binding protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 long SRA reads, 20 Proteins