Melospiza georgiana isolate bMelGeo1 chromosome 34, bMelGeo1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Melospiza.
REFSEQ INFORMATION: The reference sequence is identical to\nCM051596.1.\nAssembly name: bMelGeo1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/01/31. The original whole-genome shotgun project has the\naccession JAQMCQ000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 20-MAY-2022\nAssembly Method :: HiFiasm v. 0.15.4 + galaxy0; purge_dups\n v. 1.2.5 + galaxy3; Bionano Solve v.\n 3.6.1 + galaxy2; salsa v. 2.3 + galaxy2\nAssembly Name :: bMelGeo1.pri\nDiploid :: Principal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 31.58x\nSequencing Technology :: PacBio Sequel II HiFi\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028018845.1-RS_2023_07\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 07/03/2023\n##Genome-Annotation-Data-END##
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3-like
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131095380; Derived by automated computational analysis using gene prediction method: Gnomon.
metallo-beta-lactamase domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
metallo-beta-lactamase domain containing 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins
metallo-beta-lactamase domain-containing protein 1
TATA-box binding protein associated factor 6; Derived by automated computational analysis using gene prediction method: Gnomon.
TATA-box binding protein associated factor 6
COORDINATES: polyA evidence [ECO:0006239]
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 6
2-acylglycerol O-acyltransferase 2-B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
2-acylglycerol O-acyltransferase 2-B-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: 2-acylglycerol O-acyltransferase 2-B-like
phosphoribosylformylglycinamidine synthase; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphoribosylformylglycinamidine synthase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
antigen peptide transporter 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
antigen peptide transporter 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
olfactory receptor 14J1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 81 Proteins
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
zinc finger protein 850-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
uncharacterized LOC131095379; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131095379, transcript variant X1
uncharacterized LOC131095379, transcript variant X2
small nucleolar RNA SNORA74; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00090
Derived by automated computational analysis using gene prediction method: cmsearch.
serine/threonine-protein kinase pim-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase pim-1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
olfactory receptor 14C36-like; Derived by automated computational analysis using gene prediction method: Gnomon.
olfactory receptor 14A16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins
serine/threonine-protein kinase PAK 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.