Melospiza georgiana isolate bMelGeo1 chromosome 32, bMelGeo1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Melospiza.
REFSEQ INFORMATION: The reference sequence is identical to\nCM051594.1.\nAssembly name: bMelGeo1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/01/31. The original whole-genome shotgun project has the\naccession JAQMCQ000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 20-MAY-2022\nAssembly Method :: HiFiasm v. 0.15.4 + galaxy0; purge_dups\n v. 1.2.5 + galaxy3; Bionano Solve v.\n 3.6.1 + galaxy2; salsa v. 2.3 + galaxy2\nAssembly Name :: bMelGeo1.pri\nDiploid :: Principal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 31.58x\nSequencing Technology :: PacBio Sequel II HiFi\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028018845.1-RS_2023_07\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 07/03/2023\n##Genome-Annotation-Data-END##
proto-oncogene vav-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: proto-oncogene vav-like
ilvB acetolactate synthase like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
ecotropic viral integration site 5 like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
foot protein 1 variant 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
GIPC PDZ domain containing family member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
GIPC PDZ domain containing family member 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
A.superbus venom factor 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: A.superbus venom factor 1-like
DnaJ heat shock protein family (Hsp40) member B1; Derived by automated computational analysis using gene prediction method: Gnomon.
DnaJ heat shock protein family (Hsp40) member B1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins
trans-2,3-enoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Gnomon.
trans-2,3-enoyl-CoA reductase, transcript variant X3
trans-2,3-enoyl-CoA reductase, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
trans-2,3-enoyl-CoA reductase, transcript variant X2
very-long-chain enoyl-CoA reductase isoform X2
very-long-chain enoyl-CoA reductase isoform X1
trans-2,3-enoyl-CoA reductase, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
very-long-chain enoyl-CoA reductase isoform X3
NADH:ubiquinone oxidoreductase subunit B7; Derived by automated computational analysis using gene prediction method: Gnomon.
NADH:ubiquinone oxidoreductase subunit B7, transcript variant X1
NADH:ubiquinone oxidoreductase subunit B7, transcript variant X2
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
trafficking protein particle complex subunit 5; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking protein particle complex subunit 5, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
trafficking protein particle complex subunit 5, transcript variant X2
trafficking protein particle complex subunit 5
Purkinje cell protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
uncharacterized LOC131095030; Derived by automated computational analysis using gene prediction method: Gnomon.
protein PET100 homolog, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
XPA binding protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 4 Proteins
interferon regulatory factor 9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
ER membrane protein complex subunit 10; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
acrosin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
fas-binding factor 1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
fas-binding factor 1 homolog, transcript variant X4
fas-binding factor 1 homolog, transcript variant X3
fas-binding factor 1 homolog, transcript variant X5
fas-binding factor 1 homolog, transcript variant X1
fas-binding factor 1 homolog, transcript variant X2
fas-binding factor 1 homolog, transcript variant X6
ubiquitin like 5; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads
mitogen-activated protein kinase kinase 7; Derived by automated computational analysis using gene prediction method: Gnomon.
mitogen-activated protein kinase kinase 7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
dual specificity mitogen-activated protein kinase kinase 7
sterile alpha motif domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
sterile alpha motif domain-containing protein 1
uncharacterized LOC131094983; Derived by automated computational analysis using gene prediction method: Gnomon.
adhesion G protein-coupled receptor L1; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 501-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 long SRA reads, 111 Proteins
zinc finger protein 660-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 660-like, transcript variant X2
zinc finger protein 660-like, transcript variant X1
uncharacterized protein LOC131094977 isoform X1
zinc finger protein 660-like, transcript variant X3
zinc finger protein 660-like, transcript variant X4
uncharacterized protein LOC131094977 isoform X3
uncharacterized protein LOC131094977 isoform X2
zinc finger protein 660-like, transcript variant X5
uncharacterized protein LOC131094977 isoform X4
zinc finger protein 660-like, transcript variant X6
zinc finger protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 239-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 36 Proteins
zinc finger protein 239-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read
uncharacterized protein LOC131094976 isoform X1
cytochrome b-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
serine/threonine-protein kinase PAK 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase PAK 3-like
zinc finger protein 418-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 79-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131094991; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
uncharacterized LOC131094995; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 774-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
zinc finger protein 850-like; Derived by automated computational analysis using gene prediction method: Gnomon.
small nuclear ribonucleoprotein polypeptide A; Derived by automated computational analysis using gene prediction method: Gnomon.
small nuclear ribonucleoprotein polypeptide A
zinc finger protein 436-like; Derived by automated computational analysis using gene prediction method: Gnomon.
histone H3-like centromeric protein A; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 179 Proteins
uncharacterized LOC131094974; Derived by automated computational analysis using gene prediction method: Gnomon.
synaptonemal complex protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
olfactory receptor 14C36-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
olfactory receptor 14I1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
olfactory receptor 14J1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Fc receptor-like protein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: Fc receptor-like protein 4